TCONS_00027674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027674
Unique NameTCONS_00027674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027674 ID=TCONS_00027674|Name=TCONS_00027674|organism=Clytia hemisphaerica|type=transcript|length=1047bp
CGGATATTGAAGTTTAGCTTAAAAGGCATACGATAATTCAGAAAATGTCT
TACCAACAAGTTCCGAGTGGGCCGCATGTGCACCAGCAGCCACCACCACC
CCAAGGTGGATACCAACAACATAACAACACAACAACAATTGTAGCGGGTC
CACAACCCACATCCACCATCGCCCCTCCTCATAACCATTTCGCACCTAAA
GCAACGGCAGTGAGAAAACTTGGTATTGCCCTTCTTATTGTTGGGATCAT
CACTCTTCTCCAAGGTATTGTCATGGTTGCGGTGGCATCGAGATTCTGGA
CCTCAGTATCCGGCGGTGGCATATGGTCCGCTATCTTTGTTATCATTGCT
GCATCACTTACCATGAGCGCTGGTGGAAATGCAGAAGCACGTGGAATGAG
AATCGGTGCTCTGATTATGTTGATTTTTGCAATGATTTTCACTTTCGCTT
CTGGCATCATGAATCTGATTGGATTTATtgTTGGCATTTCTTGTGATGAT
TATAGTAATTGCTACTATGATTATAATGGAAATTGGGTATGTGATAACTA
CTGTTTACAAGACGATTCTACCGTTGGTGCAATTCTCTCCATGGTTGTAT
CTTTGTTGAATTTCATCACCTTCATTCTGTCTCTGGTTGCAGCAATTTAT
TGCGGACGTGGTGTATGCTGCCATGGTAATAGAGAAACGCAAGGTATTGT
CGTTGCCGGCCCTCGATATCCAGGGTACGGTGGCACCGTAGTGGCAACCA
GTAACTACCAGCAACAGCCATCAGGTTATCCACCGAATTCAGGGTATCAG
CCACCTACATCAGCTCCATACCCTCAAGGATCAGCACCCTCACAACAACC
AGCGTACAATCCAAACCAGCCACAATATTATCCACCACAGCAATACAGTC
AAGCAGCAATGCCAACAGCTAGTGGTGGTCAAGTCACGTATGGTAATGAT
TATCAGCAACAACCAAGACAAGAAGAACAAAAAGTTATACCTCCTCAAGA
CGCACCACCAGCATATTCAAGACATGCTTGAATGAAAGAGGAATTNN
Run BLAST on NCBI

protein sequence of TCONS_00027674-protein

>TCONS_00027674-protein ID=TCONS_00027674-protein|Name=TCONS_00027674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MSYQQVPSGPHVHQQPPPPQGGYQQHNNTTTIVAGPQPTSTIAPPHNHFA
PKATAVRKLGIALLIVGIITLLQGIVMVAVASRFWTSVSGGGIWSAIFVI
IAASLTMSAGGNAEARGMRIGALIMLIFAMIFTFASGIMNLIGFIVGISC
DDYSNCYYDYNGNWVCDNYCLQDDSTVGAILSMVVSLLNFITFILSLVAA
IYCGRGVCCHGNRETQGIVVAGPRYPGYGGTVVATSNYQQQPSGYPPNSG
YQPPTSAPYPQGSAPSQQPAYNPNQPQYYPPQQYSQAAMPTASGGQVTYG
NDYQQQPRQEEQKVIPPQDAPPAYSRHA
Run BLAST on NCBI

transcript from alignment at sc0000639:83346..97865+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027674 ID=TCONS_00027674|Name=TCONS_00027674|organism=Clytia hemisphaerica|type=transcript|length=14520bp|location=Sequence derived from alignment at sc0000639:83346..97865+ (Clytia hemisphaerica)
CGGATATTGAAGTTTAGCTTAAAAGGCATACGGTTAAGAGTGTTCGATTT
TTTTCCGAGAGTCTGGTTTATGGAAACTTCAAGGAGAGATAGTTTTGACT
TTTCACGTCAAAGttaaatgttttaaaagaggggtaaaattgaaagaagg
TTTTTAAAAGACGGTCCGGATCTAAAATTTACTGAGTGTATAAACTTTCC
TCAGATTTTCATTATTATccttttctttaaaattagaaaaagaaagGCAA
AGTTTTTCCAATCacagaattatttttaattctttccttaaaaaaggtaa
aatttgTGActccctaaaaatcaaaaaaatattcaagctggAACTAGCAA
TGTTGAATAATaagactttttttattcttttagtttttatcattactttt
taaattgaaaaatttgaaaataaatttaattttaggGGGTAAAAAGACTA
GCTAACATGAAAGATTGcaataaaaagatatatatttttactttaaaata
gatttttgggGATATATCTATAGCATCAGGGAAGCAGAAGTTTTGAGACC
aactttgacttttttctagtaAGAGTTTGTGTGAAGAATTCTTGTGTGAA
AATTTCTATACttatattattttgaatatATTGATGATTTTAGTCTCGAA
AATCCTTAAGAAAATTCGACTTAAAAGCAAAATGAAAGGCAGGTCTGATT
TATTTATTATACATGgtttttacaatatattttatagACTGTACAGTAGT
TTAGGCTCATTCTCTTCATGGAGTAGAACATTTGAGGTTGAATAGGCCTT
TTCATTAATAACGTCACAAGCATTACGTCACATTACCGCGCTTTCAAAAA
ATTGGTATGGTAATTGAGTCCCTGAGGAGTCCATAGGTGTATACTCCTTT
TATAGAAAAGTAACATTTAAAGACTcaagggatttaatcaccttTGTAAT
AGTTTTAAAACGTGGCAGTTGCCTGCACACACTAGTGAATCTTTTGTTGA
CAACCGAAGGATTTGATTTGTGAAAATGAGGGAGTCAATTTTCTCTTTGA
TGTTAATTCCGAAACACCGAACTGGCTCTCTTTTTAATTCTGTTTTTCTG
GAGAAATAGCCCTATTTCCCGTCCTTAACAGTGGAACTAAATTGCTCAAT
CTGTTCAAATTTTCGTTTGATTTCCcactaaaatgaaaattgaaattctg
AATGTTTCAAATAACAAAAGTAAGTTATTATCATGCATCTTTGGGTGTAT
TTACACTGTTGCTTGAAGGTCTTACTTGAAAATATTGAAGCAAAGAACTA
CACGATACATgctttttaaataagaacatccaacattttttgaagccttg
ggatgttcttaactttttgagttttaagcctaaaaatgttctcaatatGT
TTTTAAATCCCCCCATGttatgagtatttttgcccattttccttaaagcc
ttaaagtgttctaaacattttggacaccgaagccttattttcttataCAG
TCACTCAAGTTTGCACGATCGCGTGATCGTATTTCAAACAAACTGCAAGC
AATGTGTCGGTATTGCGGtgattttgtaaaaaactgTCGTTACTTCAGTG
TCCAGGACCCTCATACGCCCGCCTTAAAGGTTTAACAACAGCTAACATAA
TCTATTCCCATGAGTACCAGACAAAATATGTAATCGTCACAATTTTAATT
ATATAATTTTGATTAACAACCgtgttaaccctttgagtgccagggtcctt
ttttctaagttttttttaaaaaatcgctagttcaaactttaagggcttat
atctcctgatctagaaggaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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caaaattgatcattttttcccattgcaaccaaggagccgtttgcttccga
tgattaggtacaatgaaataaaaggggttaattctccatctatttcttat
tacctccatgcCAGTTCCAACATTTTGTGCAGCTACAACATGTCAAACCT
TGGTTTCATAAACATTTTAGAAAGACCCGGCGGTAAACATTGGAAATCCA
AAACAATGAACCATTGTTTACAGCTCTAGAAATCCAGgctatttttaaat
ttctttatatttctaAGAATTTCTTCTATCTATAGGCATGAAAAGAACAG
CAATATAAAAAAATGGAGTTAAAGGAAAAACTCATCCTGAAAATGGAATC
TGATCCATTATTCCTGTTAAAAAGAAGATTGTTGGTTCTGGCCTTTGCAA
TCCGTATGTTCTTCATTGGTGTTGAATATTCAGTGATTCTACCTTCGTGT
CTTCTATACATGAAGACATTTGATGTCAGTAATGTATACATGGGTCTGGT
GGTGGCTGCCTACCCCTTCGCTGGTATGATTTCTCTACCCATAGTTGGTC
GTATATACGATAAAACCAAACGGACACGTGAATTAttcattgttttgaat
tttttgcagaTTACAGGGAATATTATTTATGCGATTCCCTTCTCTTATTA
TCTACCGTTATCTGGGAGATTCTTGGCTGGTCTTGGTGATGGATTCTTAG
CCTGTGCAATGGGTGAGATCACTTATGCGTATCCTAAATCTTACCGTACT
GGTATTCTGTCCATCATGGAACTTGGTCGGGTTCTTGGCTTAGTTGTTGG
ACCGGCAATTGCTTTCTTTATTGGTAAAAAAACGTACTACGTCTGGCGAT
GGAGACTCGATTACGCCACGTTACCTGGAGTCATTATGGCGTTTTGTTGG
CTATTGTATGAGATGTTGACCTTATGTTTTGTCTTCAATGTCTCCAAAGA
GATGACAGAGAAGGCTTCTATGGTAGATGAGGATGATCTTACCGATAATG
ATGAAAGATCAATCAGCAGAATGTGTAGTTTTGAGCATACTGATCCTGAA
GCCAAGTCTTTTTATTATAAGGATTCTGATGAAACATCAAAACTGGTTGA
AAGTGAAGACAAAGCTGTTGAAATTGACGAAGCTGAGAATCTAGATCAAA
ATGGTTCTGAAGATAAACGAAGCATCAAAAGTGCACTTAAGGAATTATTC
GGTATTGAATTCCTTTTACTATTCTATGTTGATTGTGTCTTATGGTTGGC
TCAAACcgaatttgaaattcttttacCGTTCGTGACTGAATTTGAATATC
ATTGGGCACCTAAGTGGGCTGGTATGGTTTACATGGTGGGTGGAGTGGAG
CTTATCATTATATTTGTGTTGCTATATTACGTATGCTCTAAATGCGCTGT
TCGTGATAGCTACATGTTGATTCTGTCTTGCATCTTAACCATGGGTTCTA
CTGGACTCTTAATCTATGAAGGTGTCCCAAAAGATATCAACGATCGGGTC
ATCGTTTTTATCTTTATCTGTTTGTTGGTATTCACTTCAATCCCGTTCAA
CTTGGTCGCATCAAAAGCAATGCTATCGAAAATCTGCAGACCAGAATCGC
AAGGTTTCATTCAAGGTTTTTATGCATCTGTTACTCGAATCGCACTCATT
ATGGGCCCGATCATGGGCAGTCTTGTCTTTCATCATCGGCAGGTTTATGG
TATCGTAGCATCTGTTGCATCCTTCATTGCAGCTCTGGGAATTTTGTTGT
GTGTTCCAAAGTTCAATCGAAGAGAGGATGCAATGGCTAAAGAATTAGCT
GAAAAAGGATATGACTAATATGATAGAGTAAAAGACTAAATTTAAATTCT
TGGTATAATAAAGGTGTCAGGTATGCCTTAAGGACGCTATCAACGTAGAA
CGAGGGAATCATTATTCTTCCAATGCCCTGAAACCGTCAACTTCATTCCT
GTAGACCCTGTGTTTTTTTCCCTTTTACTTTAAGACCTTTCCGTAGTTTT
TTactttcttaatattttgttttgGGTCACTTCATCACcctattacacgc
tttttttatgcAAGAACAAAGTATGTAAGAACATTAAGGCTTTGaagcta
gaaaaaattaaaatcaaagctTTGTAGACTATATAAACGTGCAATTTCTA
AGGAAATTAcaacaaaatactaaaaaatgctaaaaaggagaaaactttAA
AGCAAattgaaacccaaaaagttaagatcaTCCACATGCTTCAAAACTGT
TCTGAACGTTCTCGTAAAATAACTTGTAGATTGTAGACTTCTTCTTTCAT
TCATGCCCTTGTTatgaaaatcgataaaaaacaacttgaaagcatcgagt
ttaaagcccgaaaggaGCTACTAGAGCTGAAACTCATAAATgggaaattg
aagccacttatttcacATCTAAAACGCGTGGCCCAACGCTAAACTAAAAG
TAATATTAAtcgtgaaatttcaaaatatatgcCACGTTAAAACCAAAGAA
AGCGTTATTTCTAATCCGTCAttctaaaaaaggttttttcttgattgaaa
aaagattcctctctagtcTTTCGGGCTTTATACTCAATGACACTGAAACG
CTTTTCATTTGTATGTTTGACAGCATCCCAAATTGACTATTCTAAAgctt
tttagattttctttccttttcctgttttttaaaacttttcattttatttt
gttggCTCATGCTGGCTTGTGGGCTTTATgattttaggtaaaaaatgaaa
ttgtattttatttattgttaGCTAAAAAAATTGTACTTAGTACGttagta
tttatttttcttgacaACACGGTGCTTTAAACTGTCAATTGTTGACAAAA
AAAGATAGTATAAAATTGGGGAAAAAACATGTGGTCTTTATTGAGTGTTT
AACATATTTGCAGTTATATGCTACCTTGGGTTCCATTCCCTTACCTTACC
CGTATTATTCTGTGCTTCTGCATGGTTGAAATACTAAAATGCAATGTTTT
TCCAAAGCATTTCACCCAACCCTCTGAGACCTCAAGAAGGACAAGTTAGA
CTTTGAATTTTGAACAGTGACAAAAGACAACGCATGGAAGATGATCTCTG
CTTGATATTTCAAACATCGGTGGACAACCTCTTGTTCTAAAATTTTGACA
TAGAAAATATATATCttgggaatatttaagttctTTGCTCTGTTAAGTAA
GTTCAAAATGAACTGTACTGTAGATTGCAAAATATTTGACCCATAGTCCC
GTAACCTGATATGAAATTAAAGGGGGTCATAAAGCGTTCGGTAATGTCAC
GTGCCAGCTGTCAATGTATAGTGTAAAGTGACATCCAGTAAAAATCTAGT
GATGAAAGGAGTTTATCTCGATCGACCCATATTCCATTCATCTGGTATGG
TTTCAGTGTTCCATATATGGTTAATAATATTTCGCAAGATAATCAAGGTA
TCatttaggctgcacgcatcccctctgatttGATTTAGTATATATTATTT
GTCAGCAAGCTCATCCATTCGTACGTGGAGATACCGGATTCACCTGGTGC
actgtttttaagttttgaagtAGCACGAACAATCCCTTCTTCACAAGGAA
TCAGGTCATAATCGGTATGAACGGGTGACATTGTTCAATAGTATCAAGTa
gaagctttttttataagaatacactttataataatgtccatgataaaaat
agccaaaaaattaagaatctcGTAAGAATATTGCCATCATGGAATTAGGC
AACTGAAGCTACGAATGTCTTTTCTCTATAGCCTTTTACCTGTAAATAGC
CATTTACTCCCAAGCAAtgctaagaaatttcaaaaaaatccgaaattcTT
GCTTGAGGTATATATTGCATGCTAGATTTAGGCTTTGTTTTCATCTTAAT
CTAAGTATACTGCAAGAATATTTCAGAATGATTTCGACCAAAAAGTTAat
aatatccatgatgaaatggatttacattcttataaaaacaagggTGTACT
GTTGGATCGAAATGTAAGAAAAATCTGATGAAATagccattttgaaatat
ttttccgttgCTATTGGCTTGTAAAGTGCCTCATGATTTTAGTTAAGATC
AAATTTCTCGAATTGTCTTCAACGTCACAAGTAGGATTTCATCATTCTGG
AGGGCGGTTCTTTAAAATGAGCACACACACTTAATGTTTCGGCGTTAATG
TTTTGTTATACTGACTATTATAACTTTCTATTGTGGAATGAAATCCGATC
TGGGCGGTAAGTTTCTgagagctgagagtaggtgtgctGCTTTACCTCGT
TATTCAACcgcccaggtctagcgcaaatagaaaagagGAAAGACTCCCTC
GCTCCGGGCACCGTTGACAGCCCCTAGATGAATACACTTCCTTACATACT
TATTGTGgaataaatgaaaatttcaatcccAAAATTTATCGGAGCGAAAT
TTACCGTTCCACACAAAAGAGGAAACAAATTTAGAAACTagattttgttg
ttttcttctCTTTTCCCATCGTTTTCTCTTCCTCTTGAGAGCCTAAAGCC
CCTACTATTGACCATGGTTACAGTAGAATCTTCTCTAATTGATTCTCTAA
AAGGCGAACACCTCTCATTAGCGGACAATATTTTCCCCGGCCATTTCCTA
GTCTagtcctcataaaaaagttttcaaaatgcGGACactcaagatttaaa
aaatattgcAAGCTCTCCTGCTTTCCTACTTTTCCGCATATTTAAATATA
TCTACTGATGAAAGACCCTTATCTACAGGtgaaaattctgaattttcaaT
GACGATGCGGGTTCAGTTGTCATGTTTCAggatatttttttaatcaagaa
CGGTTTTCTGATCGAACCTCCCAATGGAGAGGGAATCTCATCAGACTCTG
ATACTCAGAACTCAAGTCAGAAATCTtatttctaacccaaaccatCCCTT
TTTTACCCAATTCTGGATCACTAAAGGGTTACTCTTTTACTACTAGTCTT
TTTCGACCTTTTTAAGAGTCCAGTCGACACACACGCCGAGACACACGCGA
CATTCTTCTACCTCAGGCCCTCAGGTAACCTCTATGACGACAACGATGAA
TTTGACTTGAAGTTTTTTATTGGAACATACAAATTTCTTGAAGTCTTCGA
GCCTAAGCAtggccttaaaatattcttaattttaccattttgtgagtaat
tttgTGTAACTCACTAGGCAATTGGGTATTTTAGACTCtataccattgag
tttaaagcccgaagggctagagtaatctctgacctttctcaggcaagtaa
aagtgaagccttaaaaaatgcgccgtatttttgacgacagattgaatcta
gcaattgatatttttttcgaaatttagcgttaaattttagtttcaatctg
tcatttgtgtaaaaaccaggcgagccgctcaaggccgcgcaactttggta
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NNNNNNNNNNNNNNNNNCTtacaaagtatatgcttataaaaaataaatat
gctcacattgtgcgccgtcccttgtttactttgtaagaactaattaccga
aaggtatctcaccgtctatcaatagttatttatttgattcttataaagta
tatgcttacaagaaaagtaaaaatgctcatattgtttactgtcccttgtt
tactttgtaagaactaattaccgaaaggtatatcaccgtctatcaagagt
tattgagttgattcttataaagtatatgcNNNNNNNNNNNNNNNNNNNNN
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AGGCGGCGCTTTCCGGCTTTCCTTCGGTGGATATATTTGATGGAGGAGTT
TCATTGATGCTCTTTTTTATGCTGCGTGTATTAAATCGCCCTAGAGGGGT
GCTTTCAGCGTCCCTTTTGCACAAATTTGGCTTTGGGTTTCAAAGAAGAG
TCCCCGTTTGGTCAATGTTTCGAGCCTCGACGGCATGTCCTTATCGAACG
GCAAATAAATTACCTGATTTAagcatttttcttttatatGAGTAAAAATA
AAGAAGCTCTTGGGATTCTAATACAGTCCATTGCGGTacaagtctgtgat
cgaaaccatCACAATACCAACCAGTATTACTCTCTCTCAATCCGactgat
aatcgaagtatcgattgacATCAAGTAATAGCTTAGTAAAGCACAAATTG
CATGTGTAGAACGATAACCTTTTTTTATAGATAATTCAGAAAATGTCTTA
CCAACAAGTTCCGAGTGGGCCGCATGTGCACCAGCAGCCACCACCACCCC
AAGGTGGATACCAACAACATAACAACACAACAACAATTGTAGCGGGTCCA
CAACCCACATCCACCATCGCCCCTCCTCATAACCATTTCGCACCTAAAGC
AACGGCAGTGAGAAAACTTGGTAAGTTAGGANAGCGGGTCCACAACCCAC
ATCCACCATCGCCCCTCCTCATAACCATTTCGCACCTAAAGCAACGGCAG
TGAGAAAACTTGGTAAGTTAGGAACCCCtagcgaccgtagcatgaagcga
ccgtagcatgaaggtagagcatccagctacggtgcgcaaggttgtgggtt
cgatcttcagccgggtcataccaaagattcccaaaatggtacttgatgcc
tctctgcttgatgctcagcaagtaaagagacggatcaagggtaagtggtg
AATTGGAgtggagtggcgccctccccttaccttcgggtagacagccatac
gaaaagggagcctttgggtcgcccTTGACTGCGGTCGCAAANTGAATTGG
Agtggagtggcgccctccccttaccttcgggtagacagccatacgaaaag
ggagcctttgggtcgcccttgactgcggtcgcaaacttacttttACTTAG
GAACCCCTGATAATTGTTCTATGAGGGTCAGCTTGACGGCAAATTTGATA
CGAGGAAAATGATTTGTCAAAGGATAATCTTAATCATTTTGACATTTGAA
CTCCTTTACTAGTAGAACTAAATCTAGTACAAGACTTCAACATTTTAACT
AAAACAAAACACTAGACAGCGCTGACAGATAATTTTAAGctttgtggtcg
gtcaaaattcaagttacGCATGTGTTTTAACTATTTTAAATGCAGCNAAA
ACACTAGACAGCGCTGACAGATAATTTTAAGctttgtggtcggtcaaaat
tcaagttacGCATGTGTTTTAACTATTTTAAATGCAGCCctgactttgca
aagcgccagtggttCAGCGCGAGGTCGAGCTGCAAATTCTGCACTTTTTC
GTCGAATCTTTCTGACATTTTCGAGACAAATGCATTAACatacaattttg
attttttcaccaGGTATTGCCCTTCTTATTGTTGGGATCATCACTCTTCT
CCAAGGTATTGTCATGGTTGCGGTGGCATCGAGATTCTGGACCTCAGTAT
CCGGCGGTGGCATATGGTCCGCTATCTTTGTTATCATTGCTGCATCACTT
ACCATGAGCGCTGGTGGAAATGCAGAAGCACGTGGAATGAGAATCGGTGC
TCTGATTATGTTGATTTTTGCAATGATTTTCACTTTCGCTTCTGGCATCA
TGAATCTGATTGGATTTATGTAAGTTTCTTGGTCCATATGTTTGTCTACA
ATGAAAACCATAATATTACATATTGATAAATGGAGAATTGCTTACCGCAG
ATCCCTTTTTTGAACGTGGTCTTATAATTGTACGGTACAATAtcaaatac
agcatttatgtaagcgtttttaatcatatttttcatcaaagacTTTTCAA
CCGAACCTAagaaagccaattttaaggcattttaaGAGTATTTTACCTGT
GAATGGCCAATTATCCTGGATAATGATCATGACTTTCACAAAAACACTAT
ATTTTTGCTTGAGATGTATATTACATGTTAAATTTAGGTTATGTTTcgta
taaaaaaatttatttcttgtTGTAgtcatttagaaaaaaaatttgtaatt
ttgtttGATGAATCGAATGATAACTTTTCTTGATAATTATATAGCTCTGG
TTATATCCATCGAGCACTCTGACATCATCACTTCGTCTAACCTtgattaa
aaaaagcgtgtatattaTTCacctgtttgaaattttcatttcagtgTTGG
CATTTCTTGTGATGATTATAGTAATTGCTACTATGATTATAATGGAAATT
GGGTATGTGATAACTACTGTTTACAAGACGATTCTACCGTTGGTGCAATT
CTCTCCATGGTTGTATCTTTGTTGAATTTCATCACCTTCATTCTGTCTCT
GGTTGCAGCAATTTATTGCGGACGTGGTGTATGCTGCCATGGTAATAGAG
AAACGCAAGGTATGTAATTTTAATAAACagtttgcaaaattaaagtctga
agacaaatcacgcttttaatcaaaatttttatgtgTTATGTGTTAcgtga
catttatttctgattggttcgaatctATAGACACTAACAAAGTTATCAAC
TGTTGGTTGGAAAGCataagtaacatgggaataaactcacgtgaactttt
tcgagtaatcacatgttctGACTGCaccgatataattttgcaacctgtgt
attctCGATTTGAATAAACCTAGTTTTATGAGGAGTTTTATGTAGGCCTA
CAGCTTAATGGTAGAGCAAATGACGAATGGCGGTTGTGAGTCTCCTTTGG
TTTTGCAACGGTTGACTATATTTACTTTAGTGCAATATGCAAAGAACAAT
GAAAGAGCATAACTCGTGATTTTAGGTGCATTCCTATTAACGTCTTTGTT
TAGCACAATTCGCAAAAACGATTCTATAAAGAGAAACGCCTTTCAAAACG
CCTTTCatctttgtatatttttttgaatttatcaaaaagttaatCCTCTC
TTTATGGCCTTTCTAGGTATTGTCGTTGCCGGCCCTCGATATCCAGGGTA
CGGTGGCACCGTAGTGGCAACCAGTAACTACCAGCAACAGCCATCAGGTT
ATCCACCGAATTCAGGGTATCAGCCACCTACATCAGCTCCATACCCTCAA
GGATCAGCACCCTCACAACAACCAGCGTACAATCCAAACCAGCCACAATA
TTATCCACCACAGCAATACAGTCAAGCAGCAATGCCAACAGCTAGTGGTG
GTCAAGTCACGTATGGTAATGATTATCAGCAACAACCAAGACAAGAAGAA
CAAAAAGTTATACCTCCTCAAGACGCACCACCAGCATATTCAAGACATGC
TTGAATGAAAGAGGAATTNN

Coding sequence (CDS) from alignment at sc0000639:83346..97865+

>TCONS_00027674 ID=TCONS_00027674|Name=TCONS_00027674|organism=Clytia hemisphaerica|type=CDS|length=4935bp|location=Sequence derived from alignment at sc0000639:83346..97865+ (Clytia hemisphaerica)
ATGTCTTACCAACAAGTTCCGAGTGGGCCGCATGTGCACCAGCAGCCACC
ACCACCCCAAGGTGGATACCAACAACATAACAACACAACAACAATTGTAG
CGGGTCCACAACCCACATCCACCATCGCCCCTCCTCATAACCATTTCGCA
CCTAAAGCAACGGCAGTGAGAAAACTTGGTATTGCCCTTCTTATTGTTGG
GATCATCACTCTTCTCCAAGGTATTGTCATGGTTGCGGTGGCATCGAGAT
TCTGGACCTCAGTATCCGGCGGTGGCATATGGTCCGCTATCTTTGTTATC
ATTGCTGCATCACTTACCATGAGCGCTGGTGGAAATGCAGAAGCACGTGG
AATGAGAATCGGTGCTCTGATTATGTTGATTTTTGCAATGATTTTCACTT
TCGCTTCTGGCATCATGAATCTGATTGGATTTATtgTTGGCATTTCTTGT
GATGATTATAGTAATTGCTACTATGATTATAATGGAAATTGGGTATGTGA
TAACTACTGTTTACAAGACGATTCTACCGTTGGTGCAATTCTCTCCATGG
TTGTATCTTTGTTGAATTTCATCACCTTCATTCTGTCTCTGGTTGCAGCA
ATTTATTGCGGACGTGGTGTATGCTGCCATGGTAATAGAGAAACGCAAGG
TATTGTCGTTGCCGGCCCTCGATATCCAGGGTACGGTGGCACCGTAGTGG
CAACCAGTAACTACCAGCAACAGCCATCAGGTTATCCACCGAATTCAGGG
TATCAGCCACCTACATCAGCTCCATACCCTCAAGGATCAGCACCCTCACA
ACAACCAGCGTACAATCCAAACCAGCCACAATATTATCCACCACAGCAAT
ACAGTCAAGCAGCAATGCCAACAGCTAGTGGTGGTCAAGTCACGTATGGT
AATGATTATCAGCAACAACCAAGACAAGAAGAACAAAAAGTTATACCTCC
TCAAGACGCACCACCAGCATATTCAAGACATGCTTGAATGTCTTACCAAC
AAGTTCCGAGTGGGCCGCATGTGCACCAGCAGCCACCACCACCCCAAGGT
GGATACCAACAACATAACAACACAACAACAATTGTAGCGGGTCCACAACC
CACATCCACCATCGCCCCTCCTCATAACCATTTCGCACCTAAAGCAACGG
CAGTGAGAAAACTTGGTATTGCCCTTCTTATTGTTGGGATCATCACTCTT
CTCCAAGGTATTGTCATGGTTGCGGTGGCATCGAGATTCTGGACCTCAGT
ATCCGGCGGTGGCATATGGTCCGCTATCTTTGTTATCATTGCTGCATCAC
TTACCATGAGCGCTGGTGGAAATGCAGAAGCACGTGGAATGAGAATCGGT
GCTCTGATTATGTTGATTTTTGCAATGATTTTCACTTTCGCTTCTGGCAT
CATGAATCTGATTGGATTTATtgTTGGCATTTCTTGTGATGATTATAGTA
ATTGCTACTATGATTATAATGGAAATTGGGTATGTGATAACTACTGTTTA
CAAGACGATTCTACCGTTGGTGCAATTCTCTCCATGGTTGTATCTTTGTT
GAATTTCATCACCTTCATTCTGTCTCTGGTTGCAGCAATTTATTGCGGAC
GTGGTGTATGCTGCCATGGTAATAGAGAAACGCAAGGTATTGTCGTTGCC
GGCCCTCGATATCCAGGGTACGGTGGCACCGTAGTGGCAACCAGTAACTA
CCAGCAACAGCCATCAGGTTATCCACCGAATTCAGGGTATCAGCCACCTA
CATCAGCTCCATACCCTCAAGGATCAGCACCCTCACAACAACCAGCGTAC
AATCCAAACCAGCCACAATATTATCCACCACAGCAATACAGTCAAGCAGC
AATGCCAACAGCTAGTGGTGGTCAAGTCACGTATGGTAATGATTATCAGC
AACAACCAAGACAAGAAGAACAAAAAGTTATACCTCCTCAAGACGCACCA
CCAGCATATTCAAGACATGCTTGAATGTCTTACCAACAAGTTCCGAGTGG
GCCGCATGTGCACCAGCAGCCACCACCACCCCAAGGTGGATACCAACAAC
ATAACAACACAACAACAATTGTAGCGGGTCCACAACCCACATCCACCATC
GCCCCTCCTCATAACCATTTCGCACCTAAAGCAACGGCAGTGAGAAAACT
TGGTATTGCCCTTCTTATTGTTGGGATCATCACTCTTCTCCAAGGTATTG
TCATGGTTGCGGTGGCATCGAGATTCTGGACCTCAGTATCCGGCGGTGGC
ATATGGTCCGCTATCTTTGTTATCATTGCTGCATCACTTACCATGAGCGC
TGGTGGAAATGCAGAAGCACGTGGAATGAGAATCGGTGCTCTGATTATGT
TGATTTTTGCAATGATTTTCACTTTCGCTTCTGGCATCATGAATCTGATT
GGATTTATtgTTGGCATTTCTTGTGATGATTATAGTAATTGCTACTATGA
TTATAATGGAAATTGGGTATGTGATAACTACTGTTTACAAGACGATTCTA
CCGTTGGTGCAATTCTCTCCATGGTTGTATCTTTGTTGAATTTCATCACC
TTCATTCTGTCTCTGGTTGCAGCAATTTATTGCGGACGTGGTGTATGCTG
CCATGGTAATAGAGAAACGCAAGGTATTGTCGTTGCCGGCCCTCGATATC
CAGGGTACGGTGGCACCGTAGTGGCAACCAGTAACTACCAGCAACAGCCA
TCAGGTTATCCACCGAATTCAGGGTATCAGCCACCTACATCAGCTCCATA
CCCTCAAGGATCAGCACCCTCACAACAACCAGCGTACAATCCAAACCAGC
CACAATATTATCCACCACAGCAATACAGTCAAGCAGCAATGCCAACAGCT
AGTGGTGGTCAAGTCACGTATGGTAATGATTATCAGCAACAACCAAGACA
AGAAGAACAAAAAGTTATACCTCCTCAAGACGCACCACCAGCATATTCAA
GACATGCTTGAATGTCTTACCAACAAGTTCCGAGTGGGCCGCATGTGCAC
CAGCAGCCACCACCACCCCAAGGTGGATACCAACAACATAACAACACAAC
AACAATTGTAGCGGGTCCACAACCCACATCCACCATCGCCCCTCCTCATA
ACCATTTCGCACCTAAAGCAACGGCAGTGAGAAAACTTGGTATTGCCCTT
CTTATTGTTGGGATCATCACTCTTCTCCAAGGTATTGTCATGGTTGCGGT
GGCATCGAGATTCTGGACCTCAGTATCCGGCGGTGGCATATGGTCCGCTA
TCTTTGTTATCATTGCTGCATCACTTACCATGAGCGCTGGTGGAAATGCA
GAAGCACGTGGAATGAGAATCGGTGCTCTGATTATGTTGATTTTTGCAAT
GATTTTCACTTTCGCTTCTGGCATCATGAATCTGATTGGATTTATtgTTG
GCATTTCTTGTGATGATTATAGTAATTGCTACTATGATTATAATGGAAAT
TGGGTATGTGATAACTACTGTTTACAAGACGATTCTACCGTTGGTGCAAT
TCTCTCCATGGTTGTATCTTTGTTGAATTTCATCACCTTCATTCTGTCTC
TGGTTGCAGCAATTTATTGCGGACGTGGTGTATGCTGCCATGGTAATAGA
GAAACGCAAGGTATTGTCGTTGCCGGCCCTCGATATCCAGGGTACGGTGG
CACCGTAGTGGCAACCAGTAACTACCAGCAACAGCCATCAGGTTATCCAC
CGAATTCAGGGTATCAGCCACCTACATCAGCTCCATACCCTCAAGGATCA
GCACCCTCACAACAACCAGCGTACAATCCAAACCAGCCACAATATTATCC
ACCACAGCAATACAGTCAAGCAGCAATGCCAACAGCTAGTGGTGGTCAAG
TCACGTATGGTAATGATTATCAGCAACAACCAAGACAAGAAGAACAAAAA
GTTATACCTCCTCAAGACGCACCACCAGCATATTCAAGACATGCTTGAAT
GTCTTACCAACAAGTTCCGAGTGGGCCGCATGTGCACCAGCAGCCACCAC
CACCCCAAGGTGGATACCAACAACATAACAACACAACAACAATTGTAGCG
GGTCCACAACCCACATCCACCATCGCCCCTCCTCATAACCATTTCGCACC
TAAAGCAACGGCAGTGAGAAAACTTGGTATTGCCCTTCTTATTGTTGGGA
TCATCACTCTTCTCCAAGGTATTGTCATGGTTGCGGTGGCATCGAGATTC
TGGACCTCAGTATCCGGCGGTGGCATATGGTCCGCTATCTTTGTTATCAT
TGCTGCATCACTTACCATGAGCGCTGGTGGAAATGCAGAAGCACGTGGAA
TGAGAATCGGTGCTCTGATTATGTTGATTTTTGCAATGATTTTCACTTTC
GCTTCTGGCATCATGAATCTGATTGGATTTATtgTTGGCATTTCTTGTGA
TGATTATAGTAATTGCTACTATGATTATAATGGAAATTGGGTATGTGATA
ACTACTGTTTACAAGACGATTCTACCGTTGGTGCAATTCTCTCCATGGTT
GTATCTTTGTTGAATTTCATCACCTTCATTCTGTCTCTGGTTGCAGCAAT
TTATTGCGGACGTGGTGTATGCTGCCATGGTAATAGAGAAACGCAAGGTA
TTGTCGTTGCCGGCCCTCGATATCCAGGGTACGGTGGCACCGTAGTGGCA
ACCAGTAACTACCAGCAACAGCCATCAGGTTATCCACCGAATTCAGGGTA
TCAGCCACCTACATCAGCTCCATACCCTCAAGGATCAGCACCCTCACAAC
AACCAGCGTACAATCCAAACCAGCCACAATATTATCCACCACAGCAATAC
AGTCAAGCAGCAATGCCAACAGCTAGTGGTGGTCAAGTCACGTATGGTAA
TGATTATCAGCAACAACCAAGACAAGAAGAACAAAAAGTTATACCTCCTC
AAGACGCACCACCAGCATATTCAAGACATGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015618XLOC_015618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027674-exon-sc0000639-1491911889:83346..83377TCONS_00027674-exon-sc0000639-1491911889:83346..83377Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1510915933:83346..83377TCONS_00027674-exon-sc0000639-1510915933:83346..83377Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1575043694:83346..83377TCONS_00027674-exon-sc0000639-1575043694:83346..83377Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1491911889:94826..94953TCONS_00027674-exon-sc0000639-1491911889:94826..94953Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1510915933:94826..94953TCONS_00027674-exon-sc0000639-1510915933:94826..94953Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1575043694:94826..94953TCONS_00027674-exon-sc0000639-1575043694:94826..94953Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1491911889:95046..95107TCONS_00027674-exon-sc0000639-1491911889:95046..95107Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1510915933:95046..95107TCONS_00027674-exon-sc0000639-1510915933:95046..95107Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1575043694:95046..95107TCONS_00027674-exon-sc0000639-1575043694:95046..95107Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1491911889:95959..96214TCONS_00027674-exon-sc0000639-1491911889:95959..96214Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1510915933:95959..96214TCONS_00027674-exon-sc0000639-1510915933:95959..96214Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1575043694:95959..96214TCONS_00027674-exon-sc0000639-1575043694:95959..96214Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1491911889:96740..96954TCONS_00027674-exon-sc0000639-1491911889:96740..96954Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1510915933:96740..96954TCONS_00027674-exon-sc0000639-1510915933:96740..96954Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1575043694:96740..96954TCONS_00027674-exon-sc0000639-1575043694:96740..96954Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1491911889:97512..97865TCONS_00027674-exon-sc0000639-1491911889:97512..97865Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1510915933:97512..97865TCONS_00027674-exon-sc0000639-1510915933:97512..97865Clytia hemisphaericaexon
TCONS_00027674-exon-sc0000639-1575043694:97512..97865TCONS_00027674-exon-sc0000639-1575043694:97512..97865Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027674-proteinTCONS_00027674-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000639supercontigsc0000639:83346..97865 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275185	0.247707	0.143806	0.211037	9.14978	7.40136	21.326	17.3366	17.4091	39.1111	53.262	16.65	49.6299	53.6487	1.07527	0	0	0	1.66383	6.51935	1.45574e-05	8.72941e-06	2.9649e-06	2.27422e-06	49.119	39.029	2.73848e-07	6.69028	1.4257e-08	3.84782e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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