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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027769 ID=TCONS_00027769|Name=TCONS_00027769|organism=Clytia hemisphaerica|type=transcript|length=1890bp
atttctttgtacatattttacctaccccaaatatttaggaggctgagttt
taaacgaatcgtcaagttgaaacgaacgataaatgtatcaaggtctgttt
tatttaccccctggtgactttaacaaaagagacttaactcgatgttacaa
tccaattattgaaagtttgtctcagcctttttataatgagcgagacatac
gttctctgattacgcaattttaatattgacattttcgaggcattttgatg
taactgccagaCCACCCGATCAATCCAAACTTTGTCAATCTCCAAAGTTG
Aaccaatcaaactaatcgaactccatcaaatgattaaagttcaattaaaa
aaattaattgaaccTAATCAAGGGGCCTTCGACaaacgattttccttttt
ttttaaagagcctctttttatattataaacCATTTATATTTCTGAAGTAA
GACCGTTCCTTGCCTTTGCTTTGTGGTCTTCATTTGTGCtcaaatcattt
tctttttactcTTTTCGTTTTAACGAAAAAACTCCCTGCCCCAATTCGAC
CTCCTCTAATTGTATTTTCCTCGTAAAAAAAGACACCCCTGCCTCAGTTT
GACCTTGTCTATAATTGCTTCTCCTCTCTGACAAAGCACATGCCCCTGTC
TCAATTTGACCTTCGTGACCTCCTCCAATTTTGCATTCTCTTGTAACAGA
AAGGCACCCCTATTATATTCTCAATATTTCGTGGGACCTTCGCAACTATA
AGTTACCCCTACCTCAGTTTGACCCGCCTGTTTAACCCTCTTCTGTTTTA
CCAACTCTGTTCTTTATTTTATATACCGTTTGCTTACAGCCTTCTTTCCT
CCTAACCAAAGCAATATAGAATAAATATTAATTATCTTACCTTTCTTCTT
TGTCTTTGACGAAGTCTATTTACTTATCATAGTAAATTAATCTCACTTTG
CAGATAACAATAACTGTatataatataaacaaaaaagataaaacCCATCA
CTACTcttcgaacttttttcttcttcttcctttttcttcttcttcctttt
tgttttgattttttttaaagtttgtcACAGCATTCTTTAAAATTTCGAAT
GCTTTTTGTCTTTATTCAAACGTTTTGAAGAGATTCGAATATGTgacccc
ccaagcgatttggagtacattaaaaatgagaccggtcttggtgcggaCAG
ATCGATAATATGTGCGGCAAAAAAGCGGCAAAACAATTTACCGTGCGGTA
AAATTATACCTTTGTATCGGCcagaaatcatccaaaaatcttttctaaaa
aTCCATTCAAACGCACTCAATCGGTCACTAAAGAGCACCATTTGAATAAG
TGCGGTATTCAGTGCGGTCATGGTGCGGACATTTTGCCGTTCGAAACGTT
GCCGGCAAACGAGAAATCATAACAAACAGCATACAGCATACATACAAACT
GCGGGGACCGCACCATCGACCGCTTTAGTCAACGAggaccgcaccatcgt
ccgcTTTAGTCGGCGTTTTGTACGCACGGACCATACGGTACTGTGCGGTC
TTCTGGccgcttttttcaacttttactcGCAATTAACCAGTCGGAAAGCA
GCACGAGCACGaccgcaccaagaccggtctcgtttttaatgtactccaaa
tcatTTGGAGGGTCACATATTATGATAAACATTCAAACGTCAATATTCTT
GATATTCTCGACAGTCAATAAAAACGGTTGTAAAGACACCagataataaa
acttttttgcagTCATAGATAAAGCCTGCAAACGAAAAGAGAATAAAAGC
GGCCAGCAAACCGGTAACTTGGCCGATTTATAAAGCTGCTAAGGCGGCTT
TCTGTAGCGGACTTTTATCGGCCTTTTATATGGCCCGAAC Run BLAST on NCBI transcript from alignment at sc0000644:126286..128175 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027769 ID=TCONS_00027769|Name=TCONS_00027769|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at sc0000644:126286..128175 (Clytia hemisphaerica)
GTTCGGGCCATATAAAAGGCCGATAAAAGTCCGCTACAGAAAGCCGCCTT
AGCAGCTTTATAAATCGGCCAAGTTACCGGTTTGCTGGCCGCTTTTATTC
TCTTTTCGTTTGCAGGCTTTATCTATGActgcaaaaaagttttattatct
GGTGTCTTTACAACCGTTTTTATTGACTGTCGAGAATATCAAGAATATTG
ACGTTTGAATGTTTATCATAATATGTGACCCTCCAAatgatttggagtac
attaaaaacgagaccggtcttggtgcggtCGTGCTCGTGCTGCTTTCCGA
CTGGTTAATTGCgagtaaaagttgaaaaaagcggCCAGAAGACCGCACAG
TACCGTATGGTCCGTGCGTACAAAACGCCGACTAAAgcggacgatggtgc
ggtccTCGTTGACTAAAGCGGTCGATGGTGCGGTCCCCGCAGTTTGTATG
TATGCTGTATGCTGTTTGTTATGATTTCTCGTTTGCCGGCAACGTTTCGA
ACGGCAAAATGTCCGCACCATGACCGCACTGAATACCGCACTTATTCAAA
TGGTGCTCTTTAGTGACCGATTGAGTGCGTTTGAATGGAtttttagaaaa
gatttttggatgatttctgGCCGATACAAAGGTATAATTTTACCGCACGG
TAAATTGTTTTGCCGCTTTTTTGCCGCACATATTATCGATCTGtccgcac
caagaccggtctcatttttaatgtactccaaatcgcttggggggtcACAT
ATTCGAATCTCTTCAAAACGTTTGAATAAAGACAAAAAGCATTCGAAATT
TTAAAGAATGCTGTgacaaactttaaaaaaaatcaaaacaaaaaggaaga
agaagaaaaaggaagaagaagaaaaaagttcgaagAGTAGTGATGGgttt
tatcttttttgtttatattatatACAGTTATTGTTATCTGCAAAGTGAGA
TTAATTTACTATGATAAGTAAATAGACTTCGTCAAAGACAAAGAAGAAAG
GTAAGATAATTAATATTTATTCTATATTGCTTTGGTTAGGAGGAAAGAAG
GCTGTAAGCAAACGGTATATAAAATAAAGAACAGAGTTGGTAAAACAGAA
GAGGGTTAAACAGGCGGGTCAAACTGAGGTAGGGGTAACTTATAGTTGCG
AAGGTCCCACGAAATATTGAGAATATAATAGGGGTGCCTTTCTGTTACAA
GAGAATGCAAAATTGGAGGAGGTCACGAAGGTCAAATTGAGACAGGGGCA
TGTGCTTTGTCAGAGAGGAGAAGCAATTATAGACAAGGTCAAACTGAGGC
AGGGGTGTCTTTTTTTACGAGGAAAATACAATTAGAGGAGGTCGAATTGG
GGCAGGGAGTTTTTTCGTTAAAACGAAAAgagtaaaaagaaaatgatttg
aGCACAAATGAAGACCACAAAGCAAAGGCAAGGAACGGTCTTACTTCAGA
AATATAAATGgtttataatataaaaagaggctctttaaaaaaaaaggaaa
atcgtttGTCGAAGGCCCCTTGATTAggttcaattaatttttttaattga
actttaatcatttgatggagttcgattagtttgattggtTCAACTTTGGA
GATTGACAAAGTTTGGATTGATCGGGTGGtctggcagttacatcaaaatg
cctcgaaaatgtcaatattaaaattgcgtaatcagagaacgtatgtctcg
ctcattataaaaaggctgagacaaactttcaataattggattgtaacatc
gagttaagtctcttttgttaaagtcaccagggggtaaataaaacagacct
tgatacatttatcgttcgtttcaacttgacgattcgtttaaaactcagcc
tcctaaatatttggggtaggtaaaatatgtacaaagaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027769-exon-sc0000644-1491911889:126286..128175 | TCONS_00027769-exon-sc0000644-1491911889:126286..128175 | Clytia hemisphaerica | exon |
| TCONS_00027769-exon-sc0000644-1510915933:126286..128175 | TCONS_00027769-exon-sc0000644-1510915933:126286..128175 | Clytia hemisphaerica | exon |
| TCONS_00027769-exon-sc0000644-1575043694:126286..128175 | TCONS_00027769-exon-sc0000644-1575043694:126286..128175 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000644 | supercontig | sc0000644:126286..128175 . |
Blast
The following BLAST results are available for this feature:
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