TCONS_00027791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027791
Unique NameTCONS_00027791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027791 ID=TCONS_00027791|Name=TCONS_00027791|organism=Clytia hemisphaerica|type=transcript|length=550bp
ACCTTTTAATCACCTTAAAATGACCTTCCTCTATGTTTTCCTGTTCAGCC
TTCCTTATGacaatttttatgattttgttattttgaaatatgaaagttAA
CCCCATTAACCCCCACTGGGATTATATAATCAAGtaattaagttttattt
ttaggagTAGGGACCTAGTATATATAGaggtcaatttttcttttataagt
gGGTTAGTGAAGTCAAATATTAGAGCTTCAACGATTATTTTCATAATGTA
AGTGTAACTTTTCTTTTGTAACTCTAGGAGCTGGTTATGTCaaagattat
ttttataggGAACTGACTTTGTCTAAGTTCATTCTGTACTCGTCTcccct
tttgttttgtttactcTATCTGTTCATGAAATTAAGTAAGTTCAGATGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CTGACTTTGTCTAAGTTCATTCTGTACTCGTCTccccttttgttttgttt
actcTATCTGTTCATGAAATTAAGTAAGTTCAGATGGAGGGCTCGGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000645:47257..47806

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027791 ID=TCONS_00027791|Name=TCONS_00027791|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at sc0000645:47257..47806 (Clytia hemisphaerica)
ATTTCCGAGCCCTCCATCTGAACTTACTTAATTTCATGAACAGATAgagt
aaacaaaacaaaaggggAGACGAGTACAGAATGAACTTAGACAAAGTCAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCATCTGAACTTACTTAATTTCATGAACAGATAgagtaaacaaaacaaa
aggggAGACGAGTACAGAATGAACTTAGACAAAGTCAGTTCcctataaaa
ataatctttGACATAACCAGCTCCTAGAGTTACAAAAGAAAAGTTACACT
TACATTATGAAAATAATCGTTGAAGCTCTAATATTTGACTTCACTAACCc
acttataaaagaaaaattgacctCTATATATACTAGGTCCCTActcctaa
aaataaaacttaattaCTTGATTATATAATCCCAGTGGGGGTTAATGGGG
TTaactttcatatttcaaaataacaaaatcataaaaattgtCATAAGGAA
GGCTGAACAGGAAAACATAGAGGAAGGTCATTTTAAGGTGATTAAAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015697XLOC_015697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027791-exon-sc0000645-1491911889:47257..47806TCONS_00027791-exon-sc0000645-1491911889:47257..47806Clytia hemisphaericaexon
TCONS_00027791-exon-sc0000645-1510915933:47257..47806TCONS_00027791-exon-sc0000645-1510915933:47257..47806Clytia hemisphaericaexon
TCONS_00027791-exon-sc0000645-1575043694:47257..47806TCONS_00027791-exon-sc0000645-1575043694:47257..47806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000645supercontigsc0000645:47257..47806 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.859896	0.202911	1.04824	0.369076	0	0.820745	0.566168	0.164112	0.64484	0.46172	0	0.428782	0.237867	0.153363	0.218276	0.163805	0.303414	0.423858	0.229597	0	0.142827	0.663007	0	0	2.0998	0	0	0.363059	0.522743	0.523286
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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