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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027798 ID=TCONS_00027798|Name=TCONS_00027798|organism=Clytia hemisphaerica|type=transcript|length=881bp
GGTGATTGTGTCTGGGTGTAATTTACGAATCCCGCTCGATACTAGGGACG
AAGTCACCGCCCACAGTTCAGAAATGCGATCCTGTCTATGTCTGAGAAGA
GAAATATGGTTTGAGTGGACTGACCAGGTGAAGCCAAGATGCTTGAGTTT
TTTCTGTGGGTGAATTGTCTCGTTGTTCATTTTCAGTACAGGGTTGTCGA
TTGGGCTGATTCCTGAGATCACAAATTGGGTTTTATTCTTGTCGCTGTTA
AATTTGATGCCTTTCGGTAGGCCAAACCTGACACATTCATCGATCATGTA
TTGTAGTTGGTATAGATTGGGGCTCATCAGGATTATGTCATCGGCAAATA
CTATAATGGAGGTGTTGATGCCTGGGGGTAGATAGGTGCCAATCGATAGG
TTTTGTATTCTCTGGATGAGTTCTTCTGTATACAGGTTGTATAGATATGG
AGATATTATTGAGCCTTGTCGTACTCCTTGGGATAGTGTAAAACTGTTCG
ATACTGTTCCTTTGTATTTCGTATTAGCTTCACCGTTCATGTAGAGGTTG
ATGAGAAAACGAATGACCAATTTCGGAAGAGTGTTGTTTTGATGGAGTTT
GTCAAATAGTTGATACCAATTGCAGCTGTCAAACGCTTTCTCGGCATCAA
GGCTGCAAATGTACACTGGGGTCCCTTCGgtgttatatttcaaaatagta
TCATTTATCAGAAATTCTGCGTGTAAAGTGGATGCATCTGATGCAAAGCC
AAATTGAGCATTCTTATGATCCTTGAGTTGCGGACATTTATTtacaatta
tcttttcaatcagTTTTGTTATTATGGGTATGAGACTAATGCCCCTATAG
TTATTTGGGTCACTTACTGGTTTTCTGTACG Run BLAST on NCBI protein sequence of TCONS_00027798-protein >TCONS_00027798-protein ID=TCONS_00027798-protein|Name=TCONS_00027798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
YRKPVSDPNNYRGISLIPIITKLIEKIIVNKCPQLKDHKNAQFGFASDAS
TLHAEFLINDTILKYNTEGTPVYICSLDAEKAFDSCNWYQLFDKLHQNNT
LPKLVIRFLINLYMNGEANTKYKGTVSNSFTLSQGVRQGSIISPYLYNLY
TEELIQRIQNLSIGTYLPPGINTSIIVFADDIILMSPNLYQLQYMIDECV
RFGLPKGIKFNSDKNKTQFVISGISPIDNPVLKMNNETIHPQKKLKHLGF
TWSVHSNHISLLRHRQDRISELWAVTSSLVSSGIRKLHPDTIT Run BLAST on NCBI transcript from alignment at sc0000645:148911..149791 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027798 ID=TCONS_00027798|Name=TCONS_00027798|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at sc0000645:148911..149791 (Clytia hemisphaerica)
CGTACAGAAAACCAGTAAGTGACCCAAATAACTATAGGGGCATTAGTCTC
ATACCCATAATAACAAAActgattgaaaagataattgtaAATAAATGTCC
GCAACTCAAGGATCATAAGAATGCTCAATTTGGCTTTGCATCAGATGCAT
CCACTTTACACGCAGAATTTCTGATAAATGAtactattttgaaatataac
acCGAAGGGACCCCAGTGTACATTTGCAGCCTTGATGCCGAGAAAGCGTT
TGACAGCTGCAATTGGTATCAACTATTTGACAAACTCCATCAAAACAACA
CTCTTCCGAAATTGGTCATTCGTTTTCTCATCAACCTCTACATGAACGGT
GAAGCTAATACGAAATACAAAGGAACAGTATCGAACAGTTTTACACTATC
CCAAGGAGTACGACAAGGCTCAATAATATCTCCATATCTATACAACCTGT
ATACAGAAGAACTCATCCAGAGAATACAAAACCTATCGATTGGCACCTAT
CTACCCCCAGGCATCAACACCTCCATTATAGTATTTGCCGATGACATAAT
CCTGATGAGCCCCAATCTATACCAACTACAATACATGATCGATGAATGTG
TCAGGTTTGGCCTACCGAAAGGCATCAAATTTAACAGCGACAAGAATAAA
ACCCAATTTGTGATCTCAGGAATCAGCCCAATCGACAACCCTGTACTGAA
AATGAACAACGAGACAATTCACCCACAGAAAAAACTCAAGCATCTTGGCT
TCACCTGGTCAGTCCACTCAAACCATATTTCTCTTCTCAGACATAGACAG
GATCGCATTTCTGAACTGTGGGCGGTGACTTCGTCCCTAGTATCGAGCGG
GATTCGTAAATTACACCCAGACACAATCACC Coding sequence (CDS) from alignment at sc0000645:148911..149791 >TCONS_00027798 ID=TCONS_00027798|Name=TCONS_00027798|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at sc0000645:148911..149791 (Clytia hemisphaerica)
TACAGAAAACCAGTAAGTGACCCAAATAACTATAGGGGCATTAGTCTCAT
ACCCATAATAACAAAActgattgaaaagataattgtaAATAAATGTCCGC
AACTCAAGGATCATAAGAATGCTCAATTTGGCTTTGCATCAGATGCATCC
ACTTTACACGCAGAATTTCTGATAAATGAtactattttgaaatataacac
CGAAGGGACCCCAGTGTACATTTGCAGCCTTGATGCCGAGAAAGCGTTTG
ACAGCTGCAATTGGTATCAACTATTTGACAAACTCCATCAAAACAACACT
CTTCCGAAATTGGTCATTCGTTTTCTCATCAACCTCTACATGAACGGTGA
AGCTAATACGAAATACAAAGGAACAGTATCGAACAGTTTTACACTATCCC
AAGGAGTACGACAAGGCTCAATAATATCTCCATATCTATACAACCTGTAT
ACAGAAGAACTCATCCAGAGAATACAAAACCTATCGATTGGCACCTATCT
ACCCCCAGGCATCAACACCTCCATTATAGTATTTGCCGATGACATAATCC
TGATGAGCCCCAATCTATACCAACTACAATACATGATCGATGAATGTGTC
AGGTTTGGCCTACCGAAAGGCATCAAATTTAACAGCGACAAGAATAAAAC
CCAATTTGTGATCTCAGGAATCAGCCCAATCGACAACCCTGTACTGAAAA
TGAACAACGAGACAATTCACCCACAGAAAAAACTCAAGCATCTTGGCTTC
ACCTGGTCAGTCCACTCAAACCATATTTCTCTTCTCAGACATAGACAGGA
TCGCATTTCTGAACTGTGGGCGGTGACTTCGTCCCTAGTATCGAGCGGGA
TTCGTAAATTACACCCAGACACAATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027798-exon-sc0000645-1491911889:148911..149791 | TCONS_00027798-exon-sc0000645-1491911889:148911..149791 | Clytia hemisphaerica | exon |
| TCONS_00027798-exon-sc0000645-1510915933:148911..149791 | TCONS_00027798-exon-sc0000645-1510915933:148911..149791 | Clytia hemisphaerica | exon |
| TCONS_00027798-exon-sc0000645-1575043694:148911..149791 | TCONS_00027798-exon-sc0000645-1575043694:148911..149791 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000645 | supercontig | sc0000645:148911..149791 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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