TCONS_00027897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027897
Unique NameTCONS_00027897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027897 ID=TCONS_00027897|Name=TCONS_00027897|organism=Clytia hemisphaerica|type=transcript|length=532bp
CCAGTTACAACGAACGACTGGACAACAATTTCTTGGTCGAACTAGGTGAC
GAGGCTTTTGACAGAATGtataaaatcaaaatgggtGAATTGGAGAAATT
AACAGGCAAACGTGTGGTAGAAACGAAAGTATCAGTGGATAAAGTATTTC
GTGATacattgaatgttttgattggtGTCCAGTCTTCCTCGTACACTTTT
CTACCGGTAAGGGATTCTTTTAGAGCACATCAGAATACGCCTCTCCATAA
ATCATTTTGAGTGCAACagctgcctcgttttgaaaccattatcAAGGTGA
TTAAATCTTCGAGTGTTACTTTAAATAGAACAAATGGTTCTAATGAACTG
CTCTGGAAATCAATTACcaaagcaatattttgaaaacgaggttagcgttg
ctcgtgacgtaatttttgaaaaggcaaGACATGAATACACCCCCATCAAC
CCTTCACTGCGCGGTCGGCTTTTTTAAGggactggtaatgaatttacaag
gaacATTTGTTCTCGGCGCACGGTATTTTAAG
Run BLAST on NCBI

transcript from alignment at sc0000653:181760..182291+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027897 ID=TCONS_00027897|Name=TCONS_00027897|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0000653:181760..182291+ (Clytia hemisphaerica)
CCAGTTACAACGAACGACTGGACAACAATTTCTTGGTCGAACTAGGTGAC
GAGGCTTTTGACAGAATGtataaaatcaaaatgggtGAATTGGAGAAATT
AACAGGCAAACGTGTGGTAGAAACGAAAGTATCAGTGGATAAAGTATTTC
GTGATacattgaatgttttgattggtGTCCAGTCTTCCTCGTACACTTTT
CTACCGGTAAGGGATTCTTTTAGAGCACATCAGAATACGCCTCTCCATAA
ATCATTTTGAGTGCAACagctgcctcgttttgaaaccattatcAAGGTGA
TTAAATCTTCGAGTGTTACTTTAAATAGAACAAATGGTTCTAATGAACTG
CTCTGGAAATCAATTACcaaagcaatattttgaaaacgaggttagcgttg
ctcgtgacgtaatttttgaaaaggcaaGACATGAATACACCCCCATCAAC
CCTTCACTGCGCGGTCGGCTTTTTTAAGggactggtaatgaatttacaag
gaacATTTGTTCTCGGCGCACGGTATTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015767XLOC_015767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027897-exon-sc0000653-1491911889:181760..182291TCONS_00027897-exon-sc0000653-1491911889:181760..182291Clytia hemisphaericaexon
TCONS_00027897-exon-sc0000653-1510915933:181760..182291TCONS_00027897-exon-sc0000653-1510915933:181760..182291Clytia hemisphaericaexon
TCONS_00027897-exon-sc0000653-1575043694:181760..182291TCONS_00027897-exon-sc0000653-1575043694:181760..182291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:181760..182291 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633582	0.191899	0.47925	1.61408	0.444369	0.234098	1.27093	0.661016	0.222565	0.194881	1.04419	0	0.103534	0	0	0	0.118879	0.116687	0	0.324486	0	0	0	0	1.88685	0.841986	0	0	0.514627	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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