TCONS_00027964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027964
Unique NameTCONS_00027964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027964 ID=TCONS_00027964|Name=TCONS_00027964|organism=Clytia hemisphaerica|type=transcript|length=337bp
GGCAAAGATGGCGAACGTAGAAATAAGTGATTTATCGTGTGAAGAAAGTG
AAACAGATTTGGATGAAAGTTTAAGTGATAATGATGATATAAGTAATGAA
AAATCTCTGATTGTAAATGAAGAAGATTTAACTGATAGTACAGAGGATGC
AAAGCTGGTTGAAATACCAAAATTGGTGTTTGTAAATGAGAAGAAAGTTA
CACTTCTTGTAGAACAAGACATTGAAAGTATACCTGCTTATGTTTTTGGT
AAAGCTTTGACTCTACAAgaatcatcaaattttgaatgcCCTCATTGTGG
AAAGCCATATGTCAGggaaaaatactataaaaatcAC
Run BLAST on NCBI

protein sequence of TCONS_00027964-protein

>TCONS_00027964-protein ID=TCONS_00027964-protein|Name=TCONS_00027964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
AKMANVEISDLSCEESETDLDESLSDNDDISNEKSLIVNEEDLTDSTEDA
KLVEIPKLVFVNEKKVTLLVEQDIESIPAYVFGKALTLQESSNFECPHCG
KPYVREKYYKNH
Run BLAST on NCBI

transcript from alignment at sc0000658:185206..185542

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027964 ID=TCONS_00027964|Name=TCONS_00027964|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0000658:185206..185542 (Clytia hemisphaerica)
GTgatttttatagtatttttccCTGACATATGGCTTTCCACAATGAGGgc
attcaaaatttgatgattcTTGTAGAGTCAAAGCTTTACCAAAAACATAA
GCAGGTATACTTTCAATGTCTTGTTCTACAAGAAGTGTAACTTTCTTCTC
ATTTACAAACACCAATTTTGGTATTTCAACCAGCTTTGCATCCTCTGTAC
TATCAGTTAAATCTTCTTCATTTACAATCAGAGATTTTTCATTACTTATA
TCATCATTATCACTTAAACTTTCATCCAAATCTGTTTCACTTTCTTCACA
CGATAAATCACTTATTTCTACGTTCGCCATCTTTGCC

Coding sequence (CDS) from alignment at sc0000658:185206..185542

>TCONS_00027964 ID=TCONS_00027964|Name=TCONS_00027964|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000658:185206..185542 (Clytia hemisphaerica)
GTgatttttatagtatttttccCTGACATATGGCTTTCCACAATGAGGgc
attcaaaatttgatgattcTTGTAGAGTCAAAGCTTTACCAAAAACATAA
GCAGGTATACTTTCAATGTCTTGTTCTACAAGAAGTGTAACTTTCTTCTC
ATTTACAAACACCAATTTTGGTATTTCAACCAGCTTTGCATCCTCTGTAC
TATCAGTTAAATCTTCTTCATTTACAATCAGAGATTTTTCATTACTTATA
TCATCATTATCACTTAAACTTTCATCCAAATCTGTTTCACTTTCTTCACA
CGATAAATCACTTATTTCTACGTTCGCCATCTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015823XLOC_015823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027964-exon-sc0000658-1491911889:185206..185542TCONS_00027964-exon-sc0000658-1491911889:185206..185542Clytia hemisphaericaexon
TCONS_00027964-exon-sc0000658-1510915933:185206..185542TCONS_00027964-exon-sc0000658-1510915933:185206..185542Clytia hemisphaericaexon
TCONS_00027964-exon-sc0000658-1575043694:185206..185542TCONS_00027964-exon-sc0000658-1575043694:185206..185542Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027964-proteinTCONS_00027964-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000658supercontigsc0000658:185206..185542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.270281	0	0	0	0.295362	0.356342	0.333603	0.333273	0	1.12323	1.1538	0	0.765734	0	0	0.416136	0	0	0	0	0	0.374496	0.292997	0	0	0	0	0.059229	0.31343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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