TCONS_00027983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027983
Unique NameTCONS_00027983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1167

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027983 ID=TCONS_00027983|Name=TCONS_00027983|organism=Clytia hemisphaerica|type=transcript|length=1167bp
ggaaaaaaatcaaaagctaATACAATTAAAATGGCAACTGAAAAGAAATA
TAAATTATCTTATTTCGATTTGAGAGGTCGCGGTGAAGTCCCTCGAATGA
TTTTTAATTATGTTGGTGTGGAATTTGAAGATAAACGAATTCCATTTCCA
GAATGGCCAGCCGTTAAATCTACATTTCCGTTGGGATTTATACCAGTCAT
AACTACTCCAGATGGTACTGACATCTCTCAAACACTAGCCTGTATCATGT
ACATGGGTGATGAATTTAGCCTGTATGGTAACAATGCAAGTCAAAGAGGT
GTGATAAACTGTGTCGTCatttcaatgaaagaaattcATGATCATTGCGC
CAATATCGCCGTCTTtttaaaggaagaagaagaaaagGAAAAAGTTCGTG
CAATTTtggataaaaaaattccaatctTTTTCAAGTATTTTGAAGAATTA
AGATCTCAAAACAGTTCAAGTGCCTTCCTCGTCAGCAAATCTATCACCAT
TGCAGATTTCTTTTTGGTCGACACATTGGAATTTATTTCTGCAGCGATGC
CCGGCCGTGATTTCCTGGCTGACTATCCGAAATTAAAAGCATTAAATGAC
CATATTCGAGGTTTAGACAAAGTCAAAGAATACTTAGCCACACGCAAATA
AGGTTGTCCAGTACCTTTGGACTGTATTTTAGCACCATCTAATTACATAC
TCAATACACCTTTACACATTTTTATAtgttatttataagagattaGATTA
GATTTTTGTGGGTGTCATGATTCCTTATGTCCACGATTGTTCATATATGG
TTCGCCAGTGTTATTTATGCCAAAGTAGAGGGCGTAAATAACACTGAGGG
GCAATACAATAATGGACAATTAAGGGCATAAACAACCATACAGTCCAAAA
AAGAGCGCTATTACTATTATCAAATCTCGTGGTAcactattttttttaat
tagatttgAATTAATCATAATTTATTTTCTATAAATTAGGTAGTATAGAT
GATTTATTGAAGAAATTAATATaatgatcaaaatatttttcaaatcgtTT
TTTATATCTTGATCTCGGAGAggttcaagcccgaagggctagaggcgaat
cttAGGGATGAGATGtaatttttacaagctcttactttatttggttggtc
gttaaccagtaataaaa
Run BLAST on NCBI

protein sequence of TCONS_00027983-protein

>TCONS_00027983-protein ID=TCONS_00027983-protein|Name=TCONS_00027983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
GKKSKANTIKMATEKKYKLSYFDLRGRGEVPRMIFNYVGVEFEDKRIPFP
EWPAVKSTFPLGFIPVITTPDGTDISQTLACIMYMGDEFSLYGNNASQRG
VINCVVISMKEIHDHCANIAVFLKEEEEKEKVRAILDKKIPIFFKYFEEL
RSQNSSSAFLVSKSITIADFFLVDTLEFISAAMPGRDFLADYPKLKALND
HIRGLDKVKEYLATRK
Run BLAST on NCBI

transcript from alignment at sc0000660:51115..53787-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027983 ID=TCONS_00027983|Name=TCONS_00027983|organism=Clytia hemisphaerica|type=transcript|length=2673bp|location=Sequence derived from alignment at sc0000660:51115..53787- (Clytia hemisphaerica)
GGAAAAAAATCAAAAGCTAATACAATTAAAATGGCAACTGAAAAGAAATA
TAAATTATCTTATTTCGATTTGAGAGGTCGCGGTGAAGTCCCTCGAATGA
TTTTTAATTATGTTGGTGTGGAATTTGAAGATAAACGAATTCCATTTCCA
GAATGGCCAGCCGTTAAATCTACATGTAAGCTAAAATTTGAATCTCTCTT
AAAATTCAAAATACTTATAAATCATCAGTGTCAGTCGAGGATATTTTAGA
AATTAAAGTTAAAGTCATTTTCTGTTGAAGATCTGATGACAGACACAGGG
TCCCACAAGTGGTCATTTCCCATGCATAGGATTTCAATGGGAATTTCATG
GGATTTTTCTTGTGTCAAATGTACAAAATGTGAAAGATCTTAAATTTTCA
TCCATTTTAGTTCCGTTGGGATTTATACCAGTCATAACTACTCCAGATGG
TACTGACATCTCTCAAACACTAGCCTGTATCATGTACATGGGTGATGAAT
TTAGCCTGTATGGTAACAATGCAAGTCAAAGAGGTGTGATAAACTGTGTC
GTCATTTCAATGAAAGAAATTCATGATCATTGCGCCAATATCGCCGTCTT
TTTAAAGGAAGAAGAAGAAAAGGTTAGAATGGGCTCTTCCAGAAAAAAAC
TGTATATGAGGAATGGAGTAACTTTTGGCTCCCCCGGACAACGAGTTTTA
CCCCCGGGACAAGCATCAGCCGACCCCCCGAACAACCCAAATTACCCCCG
GATAAGCCAAATTTTGCTGATTTCTCGCTACCCCCGGACAATATATCTTC
CACCCGGGGTGTATGAACATTTTCTGGAAGAGCCCAATATTGTTTTTATT
TTACCTCAAAGTAAGAAAGTTAGTATTTCGAGTTTCTTGTTTGATAAATA
AAGTTACAGTTGACGCTCAGTAATATGGTTTTCAAAGAGTACACGTTTTT
TTTATAAGAGCATCCAACATTTTTGAAGCCTTAGGATGTTCTTAACTTTT
TGGGTTTTAAGCCTAAAATGTTCTTAACATGTTCTCATGTTTACCGTTTT
TTGAGTATTTTTGTCCGTTTTCCTAAGAAAGTTTTCTAAACATTTACAAT
CTTCCCTTTTCTTTTCTACAGGAAAAAGTTCGTGCAATTTTGGATAAAAA
AATTCCAATCTTTTTCAAGTATTTTGAAGAATTAAGATCTCAAAACAGTT
CAAGTGCCTTCCTCGTCAGCAAATCTGTAAGTTCGTGATTTTCCGCTTAA
TTCTATTTTTTCCTCTTTGGTAATTTTAATTCGTTTTAAAGTTTTAGTAA
AGAAATGTTTTCAAAAATCATATCTTTCACGTTACTTCAAAATGCTCTTA
TGTCCGGGAGAGGGGGCACTGACCTTGACGGCCGAAGGGGATGTGCCGCT
GGAGATGGAAAAACGGAGCCTGTTAGATATTGATTTGGGACCCTGTCAGA
ACGAAAAATTTCCCATGTTTTTCCGAAAATTGGCAAAAATGACTAAAAGT
AGACGCAACATTAAAACATTTTCTAACTTCCACTCTACTCTGAAAATTGT
CAAAAATTACCAAAAGTCGACCCTGTCAAATAAACATCTTGAAAATTACT
AGATTTAAGACCCTGTCAGATATCTTCAGAGCCTGATAAAGGGACCCTGA
CCAGCGGCACGTCTCCGTACCCAATACACCTTTTTACGGTTAGCTGCTTC
GTATAAAAACTCACCAAAATTTTGAGTAAACAAACCATCTCATTGGCTAA
AAGCAAAAACATACACGAAAAAATGTCCTGAGTAAGAACACAGAAAGCAC
ATTTTCTCATACTCTGCATATTTTTTTGTTTGTGTTTTTGCTTTTAGCCA
ATGGGATGGTTTACTCGAAATTTTGGTGACTTTTTATACGAAACGGCTAA
CCGGAAAACGGTGTATTTTGCCCAAGTGACACCCGGGTTCTTATAATGAG
AAGAAGTGGTTATAATAAAAATGACATTAACTTTCTCTTTAACTACAGAT
CACCATTGCAGATTTCTTTTTGGTCGACACATTGGAATTTATTTCTGCAG
CGATGCCCGGCCGTGATTTCCTGGCTGACTATCCGAAATTAAAAGCATTA
AATGACCATATTCGAGGTTTAGACAAAGTCAAAGAATACTTAGCCACACG
CAAATAAGGTTGTCCAGTACCTTTGGACTGTATTTTAGCACCATCTAATT
ACATACTCAATACACCTTTACACATTTTTATATGTTATTTATAAGAGATT
AGATTAGATTTTTGTGGGTGTCATGATTCCTTATGTCCACGATTGTTCAT
ATATGGTTCGCCAGTGTTATTTATGCCAAAGTAGAGGGCGTAAATAACAC
TGAGGGGCAATACAATAATGGACAATTAAGGGCATAAACAACCATACAGT
CCAAAAAAGAGCGCTATTACTATTATCAAATCTCGTGGTACACTATTTTT
TTTAATTAGATTTGAATTAATCATAATTTATTTTCTATAAATTAGGTAGT
ATAGATGATTTATTGAAGAAATTAATATAATGATCAAAATATTTTTCAAA
TCGTTTTTTATATCTTGATCTCGGAGAGGTTCAAGCCCGAAGGGCTAGAG
GCGAATCTTAGGGATGAGATGTAATTTTTACAAGCTCTTACTTTATTTGG
TTGGTCGTTAACCAGTAATAAAA

Coding sequence (CDS) from alignment at sc0000660:51115..53787-

>TCONS_00027983 ID=TCONS_00027983|Name=TCONS_00027983|organism=Clytia hemisphaerica|type=CDS|length=2604bp|location=Sequence derived from alignment at sc0000660:51115..53787- (Clytia hemisphaerica)
ATCACCATTGCAGATTTCTTTTTGGTCGACACATTGGAATTTATTTCTGC
AGCGATGCCCGGCCGTGATTTCCTGGCTGACTATCCGAAATTAAAAGCAT
TAAATGACCATATTCGAGGTTTAGACAAAGTCAAAGAATACTTAGCCACA
CGCAAATAAGAAAAAGTTCGTGCAATTTTGGATAAAAAAATTCCAATCTT
TTTCAAGTATTTTGAAGAATTAAGATCTCAAAACAGTTCAAGTGCCTTCC
TCGTCAGCAAATCTTTCCGTTGGGATTTATACCAGTCATAACTACTCCAG
ATGGTACTGACATCTCTCAAACACTAGCCTGTATCATGTACATGGGTGAT
GAATTTAGCCTGTATGGTAACAATGCAAGTCAAAGAGGTGTGATAAACTG
TGTCGTCATTTCAATGAAAGAAATTCATGATCATTGCGCCAATATCGCCG
TCTTTTTAAAGGAAGAAGAAGAAAAGGGAAAAAAATCAAAAGCTAATACA
ATTAAAATGGCAACTGAAAAGAAATATAAATTATCTTATTTCGATTTGAG
AGGTCGCGGTGAAGTCCCTCGAATGATTTTTAATTATGTTGGTGTGGAAT
TTGAAGATAAACGAATTCCATTTCCAGAATGGCCAGCCGTTAAATCTACA
TATCACCATTGCAGATTTCTTTTTGGTCGACACATTGGAATTTATTTCTG
CAGCGATGCCCGGCCGTGATTTCCTGGCTGACTATCCGAAATTAAAAGCA
TTAAATGACCATATTCGAGGTTTAGACAAAGTCAAAGAATACTTAGCCAC
ACGCAAATAAGAAAAAGTTCGTGCAATTTTGGATAAAAAAATTCCAATCT
TTTTCAAGTATTTTGAAGAATTAAGATCTCAAAACAGTTCAAGTGCCTTC
CTCGTCAGCAAATCTTTCCGTTGGGATTTATACCAGTCATAACTACTCCA
GATGGTACTGACATCTCTCAAACACTAGCCTGTATCATGTACATGGGTGA
TGAATTTAGCCTGTATGGTAACAATGCAAGTCAAAGAGGTGTGATAAACT
GTGTCGTCATTTCAATGAAAGAAATTCATGATCATTGCGCCAATATCGCC
GTCTTTTTAAAGGAAGAAGAAGAAAAGGGAAAAAAATCAAAAGCTAATAC
AATTAAAATGGCAACTGAAAAGAAATATAAATTATCTTATTTCGATTTGA
GAGGTCGCGGTGAAGTCCCTCGAATGATTTTTAATTATGTTGGTGTGGAA
TTTGAAGATAAACGAATTCCATTTCCAGAATGGCCAGCCGTTAAATCTAC
ATATCACCATTGCAGATTTCTTTTTGGTCGACACATTGGAATTTATTTCT
GCAGCGATGCCCGGCCGTGATTTCCTGGCTGACTATCCGAAATTAAAAGC
ATTAAATGACCATATTCGAGGTTTAGACAAAGTCAAAGAATACTTAGCCA
CACGCAAATAAGAAAAAGTTCGTGCAATTTTGGATAAAAAAATTCCAATC
TTTTTCAAGTATTTTGAAGAATTAAGATCTCAAAACAGTTCAAGTGCCTT
CCTCGTCAGCAAATCTTTCCGTTGGGATTTATACCAGTCATAACTACTCC
AGATGGTACTGACATCTCTCAAACACTAGCCTGTATCATGTACATGGGTG
ATGAATTTAGCCTGTATGGTAACAATGCAAGTCAAAGAGGTGTGATAAAC
TGTGTCGTCATTTCAATGAAAGAAATTCATGATCATTGCGCCAATATCGC
CGTCTTTTTAAAGGAAGAAGAAGAAAAGGGAAAAAAATCAAAAGCTAATA
CAATTAAAATGGCAACTGAAAAGAAATATAAATTATCTTATTTCGATTTG
AGAGGTCGCGGTGAAGTCCCTCGAATGATTTTTAATTATGTTGGTGTGGA
ATTTGAAGATAAACGAATTCCATTTCCAGAATGGCCAGCCGTTAAATCTA
CATATCACCATTGCAGATTTCTTTTTGGTCGACACATTGGAATTTATTTC
TGCAGCGATGCCCGGCCGTGATTTCCTGGCTGACTATCCGAAATTAAAAG
CATTAAATGACCATATTCGAGGTTTAGACAAAGTCAAAGAATACTTAGCC
ACACGCAAATAAGAAAAAGTTCGTGCAATTTTGGATAAAAAAATTCCAAT
CTTTTTCAAGTATTTTGAAGAATTAAGATCTCAAAACAGTTCAAGTGCCT
TCCTCGTCAGCAAATCTTTCCGTTGGGATTTATACCAGTCATAACTACTC
CAGATGGTACTGACATCTCTCAAACACTAGCCTGTATCATGTACATGGGT
GATGAATTTAGCCTGTATGGTAACAATGCAAGTCAAAGAGGTGTGATAAA
CTGTGTCGTCATTTCAATGAAAGAAATTCATGATCATTGCGCCAATATCG
CCGTCTTTTTAAAGGAAGAAGAAGAAAAGGGAAAAAAATCAAAAGCTAAT
ACAATTAAAATGGCAACTGAAAAGAAATATAAATTATCTTATTTCGATTT
GAGAGGTCGCGGTGAAGTCCCTCGAATGATTTTTAATTATGTTGGTGTGG
AATTTGAAGATAAACGAATTCCATTTCCAGAATGGCCAGCCGTTAAATCT
ACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015834XLOC_015834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027983-exon-sc0000660-1575043694:53613..53787TCONS_00027983-exon-sc0000660-1575043694:53613..53787Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1575043694:53166..53377TCONS_00027983-exon-sc0000660-1575043694:53166..53377Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1575043694:52562..52666TCONS_00027983-exon-sc0000660-1575043694:52562..52666Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1575043694:51115..51789TCONS_00027983-exon-sc0000660-1575043694:51115..51789Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1510915933:53613..53787TCONS_00027983-exon-sc0000660-1510915933:53613..53787Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1510915933:53166..53377TCONS_00027983-exon-sc0000660-1510915933:53166..53377Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1510915933:52562..52666TCONS_00027983-exon-sc0000660-1510915933:52562..52666Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1510915933:51115..51789TCONS_00027983-exon-sc0000660-1510915933:51115..51789Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1491911889:53613..53787TCONS_00027983-exon-sc0000660-1491911889:53613..53787Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1491911889:53166..53377TCONS_00027983-exon-sc0000660-1491911889:53166..53377Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1491911889:52562..52666TCONS_00027983-exon-sc0000660-1491911889:52562..52666Clytia hemisphaericaexon
TCONS_00027983-exon-sc0000660-1491911889:51115..51789TCONS_00027983-exon-sc0000660-1491911889:51115..51789Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027983-proteinTCONS_00027983-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:51115..53787 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.7367	40.1578	6.20576	2.66648	112.018	82.8355	62.1812	65.7462	40.6317	43.2163	29.0026	24.0473	13.694	11.2543	24.4353	36.6487	32.3877	26.8421	8.93632	12.3172	15.1816	13.6225	29.0436	26.6365	13.4789	13.3781	18.7885	11.8142	18.2912	17.8402
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004046GST_C
IPR004045Glutathione_S-Trfase_N
IPR010987Glutathione-S-Trfase_C-like
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00027983 vs. Swiss-Prot (Human)
Match: HPGDS (Hematopoietic prostaglandin D synthase OS=Homo sapiens GN=HPGDS PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.452e-21
Identity = 58/211 (27.49%), Postives = 99/211 (46.92%), Query Frame = 1 
Query:   49 YKLSYFDLRGRGEVPRMIFNYVGVEFEDKRIPFPEWPAVKSTFPLGFIPVITTPDGTDISQTLACIMYMGDEFSLYGNNASQRGVINCVVISMKEIHDHCANIAVFLXXXXXXXXVRAILDKKIPIFFKYFEELRSQNS------------SSAFLVSKSITIADFFLVDTLEFISAAMPGRDFLADYPKLKALNDHIRGLDKVKEYLATR 645
            YKL+YF++RGR E+ R IF Y+ +++ED RI   +WP +KST P G IP++   DG  + Q+LA   Y+     L GN   ++  ++ +V ++ +    C   A                +KK  +  + F EL + N+               +L+  S+T ADF+       +    P  D L ++P+L  L   ++ +  V  ++  R
Sbjct:    4 YKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEV-DGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMS-CFPWA----------------EKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGNSVTWADFYWEICSTTLLVFKP--DLLDNHPRLVTLRKKVQAIPAVANWIKRR 194
The following BLAST results are available for this feature:
BLAST of TCONS_00027983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HPGDS9.452e-2127.49Hematopoietic prostaglandin D synthase OS=Homo sap... [more]
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