TCONS_00027984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027984
Unique NameTCONS_00027984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027984 ID=TCONS_00027984|Name=TCONS_00027984|organism=Clytia hemisphaerica|type=transcript|length=1128bp
CTTTGATCAAACAGAGACGTCTGTTAGATTAAGGAAGTGGATTATCTCAG
GTACGCTGAAATTGTCAACAAAGAAAATGGCGTCGAAAGGCCAAGAAATG
AAAGATGCAGTCAAAAGTGCCTCATACAATATGGTTTTACAGGTCCATCT
TTAATGAAGGCATATTGTTTGTATGTATTCATCATTGCGATTAATGGAAT
TACAGAATGCTTTATGTTTGCTACAATGAGTAAAGAAGAAGTGGACAAAT
ATAATTATAAGATGTTGATGTTTTCAGTCATATTTCTGAGTGCTTCTCTT
CTGCTTACAAGATATATTGGTTCTATTGGATTCATATTTGCTAATTGTTT
GAATATGTTCTTACGAATAATACAAAgctCACTTTACATCAACAAGTATT
TCCAAGAGACTGAATATCGACCCTTGTCAGCTATACATCCATCTTTCGCT
TCGTTGTTAACCCTTTTAATTTCATTTGTCGTAATGGTCATATCAGAGGC
AATATTTTGTTGCAATTATGGTCTTTTATATCAATTATGTCATGTTGCTG
TTGGAGGAGTTTGTTTACTTGTTGTCTTAGGTAGTATTTATTTTACTGAA
CATAAATTTGTAGATTATTTAAAATCATTGATCAAACAGAAACAGCATTA
AAATGATGTTAAATATATATGAAGCTTGAATTCTTTCTGCGTAGCATGTT
TTGATAAACTATGCTTTCTAATAATTGTTACTTTTGGCTACCTAATAGGC
GGGGGGGGGGttagaaagatttttgaaaaggacACTTAtgcagcagaatt
agggcaaaagagggaaatttcaaaaacatttacaaaaaattgattAGCAG
GGGACGCTTATTAGGCACCCAAGAGTAATTATTAGTACATCTAATAGTAT
TCTATATTAAGAAGTATTTATTTGTTATGTATCTTGGTATTTGGTATATG
TATCAGCTTGTAAGAATTTTAAGACAGAAAATAGATtgactttatatttt
ttccatATTACAGACTGTCTGATCACTAACTCAGAGGGCCTTATTGCATA
TGATCACTTTTAGGTAATTTAAAATGATTCCAATTAAAATCCACGTTTCC
AGTAAGGTATTCGAAGATTAGATTACAT
Run BLAST on NCBI

transcript from alignment at sc0000660:54249..58255-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027984 ID=TCONS_00027984|Name=TCONS_00027984|organism=Clytia hemisphaerica|type=transcript|length=4007bp|location=Sequence derived from alignment at sc0000660:54249..58255- (Clytia hemisphaerica)
CTTTGATCAAACAGAGACGTCTGTTAGATTAAGGAAGTGGATTATCTCAG
GTACGCTGAAATTGTCAACAAAGAAAATGGCGTCGAAAGGCCAAGAAATG
AAAGATGCAGTCAAAAGTGCCTCATACAATATGGTTTTACAGGTTATCTT
TCGACTTTCTACATTTTCAATGAATGCTATTATGCTTCGTTATCTATCCA
GGGAAGTTTTGGGTGTAATGAATGTTCGGCTAATGTTACTTTACAGCACT
ATGTTGTTCATTTCCCGAGAAGCTTTTCGAAAAGCTTGTTTGAGTCAACA
GAGCATTAAGGAGAATGTTGAGCAAATTAAACTGAAGCAAATGATTAATT
TGACCTGGATTTGCAGTATTGTTGGTTTGTTTTCTTCATTTGTTTTGATT
TTTATCTGGACAAGCTGGTTACCACAACCAAAAGACGACCTTATCTGGCA
ATATCAAATGGCCACCATTTTAGTTGCTGCAAGCTGTAGTTTTGAACTTG
CAGTAGAACCCTTTTGGATACTGGCCCAAAGAAACTCATTACTTTCATTA
AAAGTTATGTTTGAAGGAGTTTATCTAGCTGTTAGATGTTTTATATCGAC
ATTTCTGGTTGTTTTCTTTCCTGACAAGGCACTTGTAATGTATGGTGTAA
CTTTTGTTTTAGCAGCCATTGTGTATTCTTTATGCTATGCTATCTATTTC
TGGAAATATTTAACAAAAGATGATTCAAAGAAGACCAAAGAGCTCTCACA
ATTCAAGCAGTTTGCAGACTTTTTGCCTAACATTAGATCAAAGCCTCTTT
TTCATCAAGATTATGTGAACCTTGTTACAAGTTTTTACAAACAATCAATG
CTAAAACAGTTTCTAACAGAAGGGGAGCGTTACATAATGACAATATTTGG
TATATTGACATTTAGTGAACAAGGAGTTTATGATGTTATAAACAATCTGG
GATCGCTTGCTGCTAGATTCATATTCATGCCAATTGAGGAAACATATTAC
ACTTACTTTTCAAAAATATTGTTACGTGGAATAAGAGCCAATGAGCAGAA
AAAAGAAAGTTTGGATGAAGCTGCAAGATCTTTATTTCTTGTTTTAAAGT
TTGTCTCATTAGTTGGGATGATAATTTTGGTTTTTGGTTACAGCTACTCG
TATCTTCTTTTGGATTTATACGGAGGAAAAATCCTCAGTGAAAATGAAGG
TTTGTTAATTAACTTGGTCTAATGTGGCTCCCCTTTTTTGATTCTTTCAC
TCTCCTTAAAGTTGGAAGGGTTGTAATAGCTGAATACTACCGTAAGTTGG
TCTAATGTCAACATCTCTCTTCTAATTTTGTCACCCTTCTTTAGAGATAA
GAATAATAGAAAGGTCAGAATTGCTGATTGAAACAAATAGTATTATAGGG
GGAAATGTGCTCGTTGTTTTTTAGGTTGCTTGATTTTTTTAGTCAGAGTA
CTTGTTATACATTTTTGGAAAGCTAAAGGGTAGGGGAATCAAAATAACTT
GGGTACCAATTTTTTTTTTGACACTTTGGTGTGATTTTTGGATAAATATG
ACGGTCTCAGGTAAAAATCATAGGGTGAAAAATTAATGAAAATTTTAGCT
TGAGAAAATAGAGATCTGTTGTATATTCTTAGAAAGCTATCAAAAAATTA
AGATTAGACATATTGTATAGGTGATTTCTGTACCTAACTCGAGATATTAA
CTCTTAAAAACAGTGTTTTTCAGCCAGAAACAGCTATTTTGTCCAGTTGA
GACAAAATAGCTCGAGTAAAGTAATTTAGTATGCAGAACTGAGTCAAAAG
GTTGTTGTTTTATCCTAAACAACTACTTTAATGGGATTTCGCAGATTTGG
GTGTCATCCGCGAAAATCTGCAAAATTAAGTCCGAAATTTGGAAGGGCCT
GATCTGCAAAATATTTCTAAACAAAACTCAAAATATGTCAAATAAATACT
ATTTGAATGATTACTTGCATCAAAGAGGCGCAAATAATGTGTATTTCATG
AACCAACATGCATGATTTGACAGTAAAAGTCATAAAATCGTGAAAATATT
GCTATCCAATAGTGCCACCCGCAAAATTAATTCCTCGCGAAATTTTTGAA
TTTCGCGGATAGGCTTAACCGCGAAATTTAATCCCCGCAAAAGTTTATCC
CATTAAAGTTTAAAGTACATATCAGTGATGAGAATCTTTTCTATTTTTAT
TTTAAAAAAGAAGCTGGAGAATAAATCTAATTTCAATTGATACCGACAAT
TGGGGTTACTATCATAAGCATGGGGTAACTTTCATCACTTCCAAACAGCA
GACTGTTCTAGTTTGCGATTTGTCAATTTTGCTAGAATTTAAATTAGTCA
TGACATGACTTTTGAATTTTATAAATTGAAAACTAGAAAATGTTTTGGTC
TGCAAGTGATGAAAGTTAACCCTCACTTATAAAAGTAACCCCAATTGGCG
AAAATTCTGTCCTTTTTATCTTTTCTAATTATTTTTATCTTTAAAATGGG
GTGGCCGAATTAGAAGAAGGTGGTCAACATTATACCAAAGTATGTTTATC
CCTCTCTTTCTGCATATTTTTCAAAAATTATTTTCTGGTTATAGGTCCAT
CTTTAATGAAGGCATATTGTTTGTATGTATTCATCATTGCGATTAATGGA
ATTACAGAATGCTTTATGTTTGCTACAATGAGTAAAGAAGAAGTGGACAA
ATATAATTATAAGATGTTGATGTTTTCAGTCATATTTCTGAGTGCTTCTC
TTCTGCTTACAAGATATATTGGTTCTATTGGATTCATATTTGCTAATTGT
TTGAATATGTTCTTACGAATAATACAAAGGTAATTTCGATTTTTTTTATC
TAATCTGAAATTCTTTTACCAAAGAAATGATATAGTATGACATTGTCTGT
TCAAAACTTGTCATCTGTTTAAAATAAATGGTTTGAATGTTCAGTTTAAT
CCTGGAAAGAATCTAATTAGGGTATTATAATTGGTTTTTAAAGTAAAGAA
TTAGTATACAGTAAGGCAGTGTGTGAATTTTAAATTGTTTTTTTGTCCAA
TCTAAAATGACAAACCAAGAGAATAGATACGTTTTATTACATTTATTTTC
CAGAATCGAAAGACACAAAACAATTTTCAATTGTTTTATTTTTCACTTTT
TAGCTCACTTTACATCAACAAGTATTTCCAAGAGACTGAATATCGACCCT
TGTCAGCTATACATCCATCTTTCGCTTCGTTGTTAACCCTTTTAATTTCA
TTTGTCGTAATGGTCATATCAGAGGCAATATTTTGTTGCAATTATGGTCT
TTTATATCAATTATGTCATGTTGCTGTTGGAGGAGTTTGTTTACTTGTTG
TCTTAGGTAGTATTTATTTTACTGAACATAAATTTGTAGATTATTTAAAA
TCATTGATCAAACAGAAACAGCATTAAAGTATAGAAATATAGAATATTTT
ATAATCTGATATTATAATAATCATTTATAGTTTTGATAAGAGATTGATTC
TACTGTTTTTTAGGACGTGATACTTTTTCAGATGATGTTAAATATATATG
AAGCTTGAATTCTTTCTGCGTAGCATGTTTTGATAAACTATGCTTTCTAA
TAATTGTTACTTTTGGCTACCTAATAGGCGGGGGGGGGGTTAGAAAGATT
TTTGAAAAGGACACTTATGCAGCAGAATTAGGGCAAAAGAGGGAAATTTC
AAAAACATTTACAAAAAATTGATTAGCAGGGGACGCTTATTAGGCACCCA
AGAGTAATTATTAGTACATCTAATAGTATTCTATATTAAGAAGTATTTAT
TTGTTATGTATCTTGGTATTTGGTATATGTATCAGCTTGTAAGAATTTTA
AGACAGAAAATAGATTGACTTTATATTTTTTCCATATTACAGACTGTCTG
ATCACTAACTCAGAGGGCCTTATTGCATATGATCACTTTTAGGTAATTTA
AAATGATTCCAATTAAAATCCACGTTTCCAGTAAGGTATTCGAAGATTAG
ATTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015835XLOC_015835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027984-exon-sc0000660-1575043694:58114..58255TCONS_00027984-exon-sc0000660-1575043694:58114..58255Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1575043694:55427..55661TCONS_00027984-exon-sc0000660-1575043694:55427..55661Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1575043694:54828..55102TCONS_00027984-exon-sc0000660-1575043694:54828..55102Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1575043694:54249..54724TCONS_00027984-exon-sc0000660-1575043694:54249..54724Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1510915933:58114..58255TCONS_00027984-exon-sc0000660-1510915933:58114..58255Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1510915933:55427..55661TCONS_00027984-exon-sc0000660-1510915933:55427..55661Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1510915933:54828..55102TCONS_00027984-exon-sc0000660-1510915933:54828..55102Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1510915933:54249..54724TCONS_00027984-exon-sc0000660-1510915933:54249..54724Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1491911889:58114..58255TCONS_00027984-exon-sc0000660-1491911889:58114..58255Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1491911889:55427..55661TCONS_00027984-exon-sc0000660-1491911889:55427..55661Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1491911889:54828..55102TCONS_00027984-exon-sc0000660-1491911889:54828..55102Clytia hemisphaericaexon
TCONS_00027984-exon-sc0000660-1491911889:54249..54724TCONS_00027984-exon-sc0000660-1491911889:54249..54724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:54249..58255 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.43932	3.30018	1.32415	1.44008	5.97448	1.91659	2.61374	3.1467	1.9619	1.1825	2.57416	0.96467	1.06406	1.59398	1.16618	1.80046	1.75347	2.54568	0.78741	0.911472	3.86091	2.47984	8.00698	6.58891	1.0511	1.77166	3.14827	3.40515	5.72779	5.04689
Blast
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BLAST of TCONS_00027984 vs. Swiss-Prot (Human)
Match: RFT1 (Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.962e-41
Identity = 86/179 (48.04%), Postives = 116/179 (64.80%), Query Frame = 1 
Query:  109 SQKCLIQYGFT------GPSLMKAYCLYVFIIAINGITECFMFATMSKEEVDKYNYKMLMFSVIFLSASLLLTRYIGSIGFIFANCLNMFLRIIQSSLYINKYFQETEYRPLSAIHPSFASLLTLLISFVVMVISEAIFCCNYGLLYQLCHXXXXXXXXXXXXXSIYFTEHKFVDYLKS 627
            SQ  L  YG T      GP L+++YCLYV ++AING+TECF FA MSKEEVD+YN+ ML  S  FL  S LLTR+ GS+GFI ANC NM +RI QS  +I++Y++ + +RPL+ +H S   L T  +S  V  +SE   CC  G   +L H+AVG  CL   LG+ + TE K + +L++
Sbjct:  351 SQLALDIYGGTMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKEEVDRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRPLAGLHLSPVLLGTFALSGGVTAVSEVFLCCEQGWPARLAHIAVGAFCLGATLGTAFLTETKLIHFLRT 529
The following BLAST results are available for this feature:
BLAST of TCONS_00027984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFT11.962e-4148.04Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 ... [more]
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