TCONS_00027989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027989
Unique NameTCONS_00027989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027989 ID=TCONS_00027989|Name=TCONS_00027989|organism=Clytia hemisphaerica|type=transcript|length=402bp
AAACAATCAATGTCTGCTGTATTGATCTCCCAAGCAGTGCGATAACAACG
TGTCATATAGTTAGCGCGCGTCACAATCCCGCCTGCGAACCGTGAGTCAA
CCATATGAAATACTGATGTCATGCGCGGTCGCGAGTGAATGCGCTTGTGC
CCGATTTTCTCCTTTGGAAACAAGTATTCTTTTTCATCGTTAGAGTTTGA
GAATTCGATTGTTTTAGGAGACGAATCATCGAATGCGACAGTATGGTGGA
AGCGAGGAAACTCCTCGAAAGGAAGTTCTCCTTTTTCAATTTCTGGCATT
ATGCAAGGTTGTTTTTTCTCTTATACTTCTAAAAGGAGGGAAAAAGGAAA
GATTAAAAAGTTAATAAGTGCAAATGACAAATAGATAATAAAACTGTTTT
CA
Run BLAST on NCBI

protein sequence of TCONS_00027989-protein

>TCONS_00027989-protein ID=TCONS_00027989-protein|Name=TCONS_00027989-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MPEIEKGELPFEEFPRFHHTVAFDDSSPKTIEFSNSNDEKEYLFPKEKIG
HKRIHSRPRMTSVFHMVDSRFAGGIVTRANYMTRCYRTAWEINTADIDC
Run BLAST on NCBI

transcript from alignment at sc0000660:78358..78759

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027989 ID=TCONS_00027989|Name=TCONS_00027989|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at sc0000660:78358..78759 (Clytia hemisphaerica)
TGAAAACAGTTTTATTATCTATTTGTCATTTGCACTTATTAACTTTTTAA
TCTTTCCTTTTTCCCTCCTTTTAGAAGTATAAGAGAAAAAACAACCTTGC
ATAATGCCAGAAATTGAAAAAGGAGAACTTCCTTTCGAGGAGTTTCCTCG
CTTCCACCATACTGTCGCATTCGATGATTCGTCTCCTAAAACAATCGAAT
TCTCAAACTCTAACGATGAAAAAGAATACTTGTTTCCAAAGGAGAAAATC
GGGCACAAGCGCATTCACTCGCGACCGCGCATGACATCAGTATTTCATAT
GGTTGACTCACGGTTCGCAGGCGGGATTGTGACGCGCGCTAACTATATGA
CACGTTGTTATCGCACTGCTTGGGAGATCAATACAGCAGACATTGATTGT
TT

Coding sequence (CDS) from alignment at sc0000660:78358..78759

>TCONS_00027989 ID=TCONS_00027989|Name=TCONS_00027989|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0000660:78358..78759 (Clytia hemisphaerica)
ATGCCAGAAATTGAAAAAGGAGAACTTCCTTTCGAGGAGTTTCCTCGCTT
CCACCATACTGTCGCATTCGATGATTCGTCTCCTAAAACAATCGAATTCT
CAAACTCTAACGATGAAAAAGAATACTTGTTTCCAAAGGAGAAAATCGGG
CACAAGCGCATTCACTCGCGACCGCGCATGACATCAGTATTTCATATGGT
TGACTCACGGTTCGCAGGCGGGATTGTGACGCGCGCTAACTATATGACAC
GTTGTTATCGCACTGCTTGGGAGATCAATACAGCAGACATTGATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015839XLOC_015839Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027989-proteinTCONS_00027989-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027989-exon-sc0000660-1491911889:78358..78759TCONS_00027989-exon-sc0000660-1491911889:78358..78759Clytia hemisphaericaexon
TCONS_00027989-exon-sc0000660-1510915933:78358..78759TCONS_00027989-exon-sc0000660-1510915933:78358..78759Clytia hemisphaericaexon
TCONS_00027989-exon-sc0000660-1575043694:78358..78759TCONS_00027989-exon-sc0000660-1575043694:78358..78759Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:78358..78759 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.183823	0	0	0	1.98316	2.54657	1.18166	0.221252	0.309807	0.959366	0	0.122425	5.3792	2.79318	0.417522	0.112016	1.65594	1.98016	6.83926	5.31647	1.7773	1.8205	0.843069	1.53294	0.394724	0.528423	0.504114	0.269002	2.04029	3.94959
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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