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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028006 ID=TCONS_00028006|Name=TCONS_00028006|organism=Clytia hemisphaerica|type=transcript|length=3005bp
taaaggttttatttttacataagtgttcccgtttcatatcagacacatat
ttcatatNGAAGCAATTTGAAACGGAAATGAAAAACAATGACGATTTTAA
GGTAGCTGAGGCGCAAAAGATCAAAATTGGAAGAAGACAAAAAGATAGTT
TCATGTTACGTGATAATATAACTTTTCAATGTCCTGTGTGTTCTTTGGAG
GTTGCACGTCTAAGGGAGCATATGGAACAGAACCATAAAATGAAAAGACA
GGACTGTGTGCATGAAGAAACAAGACAACTCCGTGTCAGGTTTTGCCAGG
AAAGTCACGACGGTGTGCATAGGGTCTTACCCTGCTGTGAATGTAACACG
TGGCTTTGCGATAGTGTTTTTAAGAAACATATGAAGAAGGTTCACCACAA
GGGTGACAGTgatattttaacaattttaaatGACAAAGCTTTTGTTAAAT
CTAAATTAATGGATAAATTTGGAAATATTCTTGATCCCTCAAAACGATTG
GTTGAGAAAGCGGTTTCAGAAACATTATCTACCACCCTCAGAAAAGTTGA
AGATTCTAATCTTCAGACAGCTAGAAAAGttttatcaaaatcttcaaatc
ttTCAATCAAGACTGAAATTTCTACTAAATCTGCTGCTGCTCCTGCTATA
AAGACTAATTATAAAGATAATGGAGTGAGATCTGTAAGAGTTCCCTTGAG
AACTAAATCCGATGTCGGTGAGCTCACGTGTACTTACAGATTTTTCGGCG
TTGATAATTTTGTACCGAAGAATATACCTACCGTTCCTTTAAGTTCAGCT
ATTGTTCTGCAAAATAATCATTCTGTTCGGAACACATTCATTATTCCGAA
AACTGTATCAACTGTTTTGCAAAATAAACCTTCTGCTCCGAGAAATATTC
CAACTGTTCCGCAGAATACAACTTCGATTCCGAGAAATATACCAATTGTT
TCGCAAAATACAACTGTTCCAAAAAACATTCCAACTGTTTCGCAAAATAC
AACTGTTCTGAAAAATATTCCAACTGTTCCGCAGGATGCAGCTGTTCCAA
GAAGTATTCCAACTGTTTCGCAAAATACAACTGTTCTGAAAAATATTCCA
ACTGTTCCGCAGGATACCGCTTCTATTCCGATAAATATTCTAACTGCTTC
ACAGAATACACCTGTTCCAAGAAATGTACCAACTGTTCTGCAAAATAAAC
CTGTTCCGAGAAATATTCCAACTGTTCCGCAGAATACAGCTTCACAGAAT
ACACCTGTTCCAAGAAATGTGCCAACTGTTCCGCAGGATGCAGCTGTTCC
AAGAAGTATTCCAACTGTTTCGCAGAATACAGCTTCTATTCCGAGAAATA
TTCCAACTGTTCCACAGAATACACCtgttccaagaaatatttcaacTGTT
CCACAGAATACACCTGTTCCAAGAAATGTACCAATTGTTCCGCAGAATAG
ACCTGTTCCGAGAAATATTCAAACTGTTCTTCAGAATACAGCTTCTATTC
CGAGAAATATTCCAACTGTTCCACAGAAAACACCTGTTCCGAGAAATATA
CAAACTGCTCCACAGAATACACCTGTTCCGAGAAATATTCCAACTGTTCC
GCAGAATACAACTTCGATTCCGAGAAATATACAAACTGCTCCACAGAATA
CACCTGTTCCGAGAAATATTCCAACTGTTCCGCAAAGTACACCTTTTTCA
AGAAATATTCCAACTGTTCTGCAAAGTACAcctttttcaagaattattcc
AACTGTTCCGCAAAGTACACctttttcaagaagtatttcaacTGTTCCGC
AAAGTACACCTTTTTCAAGAAGTATACCAATAGTTCCGCAAAATACACCT
ACTGTTCCAAAGATTATTCCATTTATCACGAAAAGTACGACATCTCCCAA
ATTGATGGAATCTGTCccaaaaaatgtaatttcaGTTTTACAAAAAACAC
CTGATCCAAAAGATAGGAATTCTTCAACGAAGGGCCGCTGCAGCATCATT
AAAACAGAAGCTTCTGACGATAAATTACCTAATGCCAATTCTGAAACTTC
TATTCAAGATAATCATCAAAATGTCGGACTGTGcgacggtaaaaacagta
taaaAAGGAAGATATCAATTACTGGCGGTGAAATTCTTGTAAAGAAACCT
AAAAAGAAACCAGACATTGGGTCGAGCTCACAAGCCTCAAAGGAAGTGAA
ATCCGAGTCGAATGTGATCTTTAAAGAATTTGTGCATGACGTACAACATT
TGGCTACGATGACAAAATTATTCATCAGCACCAGACTTGGAGGGAAGATT
AACATCTATTTGTAAAGAAGTTTTAAAAGATCTTTCACAACCTGTCAAAG
ATTCTTTCAACCAACCAGCCTCCTAATTAGTTGAAATGTTCAAAATATAA
CCTAAAAACCACAAGAGGTAATTTTTACATGActtgaatcaaatcaaaat
atatgCAACAGTCATTGTTGCAACTTTTCTGTCTATACGGAAATCCGTCA
AGCTGAGATACGAATAAATTTTGTCGTAAAGAGGATTTTTGGTTCATCAA
ATGGCCCACTAATTCAAATGCATTTCAAGTTTTCCGTCCATATTCACCAA
AGCCAGTTTCAACACTATACAGTTTTTAAGTATTTACCATCAACGTAATT
CGGCTTTGGTAATTTTCAACTGAATTCCTTCTAAGCTGATTTTGATGCAA
AGAAGTGACAGATTGCACTATATTGTGGAATGTCGAAAGTGTCACAGTAG
AATTTCCATTATTCGAACACGTGTTCTtgggttccaaataaacgcccccc
cccggaccttattaagaccccccccccccgtttNTCTATTAGTTTATCCT
ATTATTAATATaattaattactgtaatttggaaAATCTAATTTTATATTT
CAACCGTCCTAAGGAGTTGAATAATATTTATAGCAATTAGGATTTTagat
ttatagatttttttaattgttttagtTTTATGTAAGTTTTTAAGTGGCGT
GGCGC Run BLAST on NCBI transcript from alignment at sc0000661:39697..43798+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028006 ID=TCONS_00028006|Name=TCONS_00028006|organism=Clytia hemisphaerica|type=transcript|length=4102bp|location=Sequence derived from alignment at sc0000661:39697..43798+ (Clytia hemisphaerica)
taaaggttttatttttacataagtgttcccgtttcatatcagacacatat
ttcatatNGAAGCAATTTGAAACGGAAATGAAAAACAATGACGATTTTAA
GGTAGCTGAGGCGCAAAAGATCAAAATTGGAAGAAGACAAAAAGATAGTT
TCATGTTACGTGATAATATAACTTTTCAATGTCCTGTGTGTTCTTTGGAG
GTTGCACGTCTAAGGGAGCATATGGAACAGAACCATAAAATGAAAAGACA
GGACTGTGTGCATGAAGAAACAAGACAACTCCGTGTCAGGTTTTGCCAGG
AAAGTCACGACGGTGTGCATAGGGTCTTACCCTGCTGTGAATGTAACACG
TGGCTTTGCGATAGTGTTTTTAAGAAACATATGAAGAAGGTTCACCACAA
GGGTGACAGTgatattttaacaattttaaatGACAAAGCTTTTGTTAAAT
CTAAATTAATGGATAAATTTGGAAATATTCTTGATCCCTCAAAACGATTG
GTTGAGAAAGCGGTTTCAGAAACATTATCTACCACCCTCAGAAAAGTTGA
AGATTCTAATCTTCAGACAGCTAGAAAAGttttatcaaaatcttcaaatc
ttTCAATCAAGACTGAAATTTCTACTAAATCTGCTGCTGCTCCTGCTATA
AAGACTAATTATAAAGATAATGGAGTGAGATCTGTAAGAGTTCCCTTGAG
AACTAAATCCGATGTCGGTGAGCTCACGTGTACTTACAGATTTTTCGGCG
TTGATAATTTTGTACCGAAGAATATACCTACCGTTCCTTTAAGTTCAGCT
ATTGTTCTGCAAAATAATCATTCTGTTCGGAACACATTCATTATTCCGAA
AACTGTATCAACTGTTTTGCAAAATAAACCTTCTGCTCCGAGAAATATTC
CAACTGTTCCGCAGAATACAACTTCGATTCCGAGAAATATACCAATTGTT
TCGCAAAATACAACTGTTCCAAAAAACATTCCAACTGTTTCGCAAAATAC
AACTGTTCTGAAAAATATTCCAACTGTTCCGCAGGATGCAGCTGTTCCAA
GAAGTATTCCAACTGTTTCGCAAAATACAACTGTTCTGAAAAATATTCCA
ACTGTTCCGCAGGATACCGCTTCTATTCCGATAAATATTCTAACTGCTTC
ACAGAATACACCTGTTCCAAGAAATGTACCAACTGTTCTGCAAAATAAAC
CTGTTCCGAGAAATATTCCAACTGTTCCGCAGAATACAGCTTCACAGAAT
ACACCTGTTCCAAGAAATGTGCCAACTGTTCCGCAGGATGCAGCTGTTCC
AAGAAGTATTCCAACTGTTTCGCAGAATACAGCTTCTATTCCGAGAAATA
TTCCAACTGTTCCACAGAATACACCtgttccaagaaatatttcaacTGTT
CCACAGAATACACCTGTTCCAAGAAATGTACCAATTGTTCCGCAGAATAG
ACCTGTTCCGAGAAATATTCAAACTGTTCTTCAGAATACAGCTTCTATTC
CGAGAAATATTCCAACTGTTCCACAGAAAACACCTGTTCCGAGAAATATA
CAAACTGCTCCACAGAATACACCTGTTCCGAGAAATATTCCAACTGTTCC
GCAGAATACAACTTCGATTCCGAGAAATATACAAACTGCTCCACAGAATA
CACCTGTTCCGAGAAATATTCCAACTGTTCCGCAAAGTACACCTTTTTCA
AGAAATATTCCAACTGTTCTGCAAAGTACAcctttttcaagaattattcc
AACTGTTCCGCAAAGTACACctttttcaagaagtatttcaacTGTTCCGC
AAAGTACACCTTTTTCAAGAAGTATACCAATAGTTCCGCAAAATACACCT
ACTGTTCCAAAGATTATTCCATTTATCACGAAAAGTACGACATCTCCCAA
ATTGATGGAATCTGTCccaaaaaatgtaatttcaGTTTTACAAAAAACAC
CTGATCCAAAAGATAGGAATTCTTCAACGAAGGGCCGCTGCAGCATCATT
AAAACAGAAGCTTCTGACGATAAATTACCTAATGCCAATTCTGAAACTTC
TATTCAAGATAATCATCAAAATGTCGGACTGTGcgacggtaaaaacagta
taaaAAGGAAGATATCAATTACTGGCGGTGAAATTCTTGTAAAGAAACCT
AAAAAGAAACCAGACATTGGGTCGAGCTCACAAGCCTCAAAGGAAGTGAA
ATCCGAGTCGAATGTGATCTTTAAAGTAAGTGTTCTTCTTTTAGACCCCT
GGATGTCGATCCTACCTATTCTTAATTGAGTTACAATGTACCTGACAGTT
TTATCCTTTATGTATATTTATCCTTCTTTTAATCTTTTGGCAATTTTAAG
ATATGAAAGAATGATCCAATTTTGTTGGTTTTACCATGTCCATGGTTTTA
CACGTTTTCTAAATGATTTTGTATTTGGGTATATTTGGAAAGCTGATGAT
CGGCAACACTCGATTGATGTTTCAGTGTTTATTTTGCGCAAATGAAAGGG
AGGAGTTCTATTTCTTAATGGGTTCttccagaagaaaaaaaagaatatgg
GGAGCGGAAGATACaacattttctggaaatttaccTTCCCCcaacattgt
gacttttgacccacCGGACAGTAggtctaccccccccccccNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGAACAAGCAGCAGTTG
ACCCCGAGCATTTAAAACTACCCCCACCAAGCTAGTCTGAATcccagacc
tctacaaaaccccaggtagtatagtatagtctataaggagcacgaatcag
ttagtggatgccagcagcctaccaCCAAGCAGGAAAAGTTTATCCGTTTA
CCCCCGGCAATATCTCCTCCACCTCTTCCCATGTACGatcattttctgga
agagcccaatcaaACTTGAATGATTGTATTTCGTTTTTCGTTGCTATAGG
AATTTGTGCATGACGTACAACATTTGGCTACGATGACAAAATTATTCATC
AGGTGAGTATTCATTTCTCTGTTGGTTTGAAAATGTTGCTCGATTGTCCT
TCATTAGCCCTTTTAGCAGCTTCAGTATCAGTCTCCTTTTCAAATATTCT
ACTAATTCTAACTCGACTGGCTATTATTTTAATGATAAGTTCTTCGCTCC
AATTTTTCATTCCTGTCCCCGCGTTCTTTTATATGAACTAACATTCAGAA
ATTTTTGAGGGAATTGAGAGAATATTTTGGCCAATGAAACCTCATGTTGT
TATATAGTTCGTTCGTATAAAAACGTATATATAAGGTAGCCGAGATCAct
ccattttcttcttttgttagGAAAGCACCAGACTTGGAGGGAAGATTAAC
ATCTATTTGTAAAGAAGTTTTAAAAGATCTTTCACAACCTGTCAAAGATT
CTTTCAACCAACCAGCCTCCTAATTAGTTGAAATGTTCAAAATATAACCT
AAAAACCACAAGAGGTAATTTTTACATGActtgaatcaaatcaaaatata
tgCAACAGTCATTGTTGCAACTTTTCTGTCTATACGGAAATCCGTCAAGC
TGAGATACGAATAAATTTTGTCGTAAAGAGGATTTTTGGTTCATCAAATG
GCCCACTAATTCAAATGCATTTCAAGTTTTCCGTCCATATTCACCAAAGC
CAGTTTCAACACTATACAGTTTTTAAGTATTTACCATCAACGTAATTCGG
CTTTGGTAATTTTCAACTGAATTCCTTCTAAGCTGATTTTGATGCAAAGA
AGTGACAGATTGCACTATATTGTGGAATGTCGAAAGTGTCACAGTAGAAT
TTCCATTATTCGAACACGTGTTCTtgggttccaaataaacgccccccccc
ggaccttattaagaccccccccccccgtttNTCTATTAGTTTATCCTATT
ATTAATATaattaattactgtaatttggaaAATCTAATTTTATATTTCAA
CCGTCCTAAGGAGTTGAATAATATTTATAGCAATTAGGATTTTagattta
tagatttttttaattgttttagtTTTATGTAAGTTTTTAAGTGGCGTGGC
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028006-exon-sc0000661-1491911889:39697..41921 | TCONS_00028006-exon-sc0000661-1491911889:39697..41921 | Clytia hemisphaerica | exon |
| TCONS_00028006-exon-sc0000661-1510915933:39697..41921 | TCONS_00028006-exon-sc0000661-1510915933:39697..41921 | Clytia hemisphaerica | exon |
| TCONS_00028006-exon-sc0000661-1575043694:39697..41921 | TCONS_00028006-exon-sc0000661-1575043694:39697..41921 | Clytia hemisphaerica | exon |
| TCONS_00028006-exon-sc0000661-1491911889:42696..42748 | TCONS_00028006-exon-sc0000661-1491911889:42696..42748 | Clytia hemisphaerica | exon |
| TCONS_00028006-exon-sc0000661-1510915933:42696..42748 | TCONS_00028006-exon-sc0000661-1510915933:42696..42748 | Clytia hemisphaerica | exon |
| TCONS_00028006-exon-sc0000661-1575043694:42696..42748 | TCONS_00028006-exon-sc0000661-1575043694:42696..42748 | Clytia hemisphaerica | exon |
| TCONS_00028006-exon-sc0000661-1491911889:43072..43798 | TCONS_00028006-exon-sc0000661-1491911889:43072..43798 | Clytia hemisphaerica | exon |
| TCONS_00028006-exon-sc0000661-1510915933:43072..43798 | TCONS_00028006-exon-sc0000661-1510915933:43072..43798 | Clytia hemisphaerica | exon |
| TCONS_00028006-exon-sc0000661-1575043694:43072..43798 | TCONS_00028006-exon-sc0000661-1575043694:43072..43798 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000661 | supercontig | sc0000661:39697..43798 + |
Blast
The following BLAST results are available for this feature:
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