|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028014 ID=TCONS_00028014|Name=TCONS_00028014|organism=Clytia hemisphaerica|type=transcript|length=876bp
aaaaagtaagcatgagcatAAAATAGCATTGCTagcattactggaagaaa
aacctccactgctgctccacgacaccgggagttcccaggcggtcccccat
ccaagtactatcccggcccgacgatgcttaacttccNTCGACAAGTCGGT
TGATGATATCAATTCTCGACAAAAAGGACTGGTCGCTTGTTATGACAGTT
CTTCAAGTGATGAAAGCTCAACCTCCACTCATTTCAAAGAAGATATTTTT
GCTGACAGTGCTACTTGTATATCTGATCCTGAAAAGAATGAAGAACCCTT
TCATGAAAATACATCTGATCAAAATGACGGAAAACCGAGCAATGAACACC
CTCCAAACCAAAAAGATTGTGTTGTTCATCTTCCCATAGGAACCATTGAA
GCAACAAAATCTCAAAAGTCTTTGCATACGTCAAAAGGTAATGATTCGAA
CAACGAAACTAGTGGATCAGTTTTGGACTCAACACTTTTATGCCAGGAAA
ACGATATCACCACTCGTTGCTCTCCAAATAAAGTCCTTCCTGACCACAGA
AACAATGTTTCTTCATCATCTAACCTTGCTCATTATTTGAACAAAGGAAA
TCaccaagaaaaagaaattcatactcaAGAAATCGTGATTGATTTTCAAC
CATATCAACAAACCAAAATTATTGATTCCAAGAATAAGAAATTTCACTTG
GAACAAGAAAGAATCCGTAGCTTACAAAAACAAATCTCTCGTAAACTGGA
AAACATTCGTTGTAGTAGTACAGTTGTAAATcgctttaaaaaagaaaacg
ctTTTACGAAACTTGATGCTGAACTCCATCATAAACAAGAAAAGGTTCCT
TCTCGTAAATTTACGAAATTTCCTCT Run BLAST on NCBI transcript from alignment at sc0000661:74685..78277+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028014 ID=TCONS_00028014|Name=TCONS_00028014|organism=Clytia hemisphaerica|type=transcript|length=3593bp|location=Sequence derived from alignment at sc0000661:74685..78277+ (Clytia hemisphaerica)
aaaaagtaagcatgagcatAAAATAGCATTGCTagcattactggaagaaa
aacctccactgctgctccacgacaccgggagttcccaggcggtcccccat
ccaagtactatcccggcccgacgatgcttaacttccNTCGACAAGTCGGT
TGATGATATCAATTCTCGACAAAAAGGTACCTAGTAACTAtttgattttg
gattttttcccACAGATCCTTTGTTGATAGATAGGTGACATTTTTCTTAT
ATTACTACacgttatttataagaacatccggatgttctttcaatttttta
gcctaaaaatgttgCTAAACATCttcttattttcacatttttgtaaGCAT
TTTTGTCAGTTTGcttaagaaatcgggtattTTAAAACACCCCCTTAGAC
CCACTAACCCCTTCTCACTGGATAAATTGGAAAATTATACTTAATTTTTG
TCCCGCTGAAAacaatcagataagcaaatcctcgccactgcaaaatattg
tgctatctTTTCAATCCTcgccactgcaaaatattgtgctatctTTTCAA
TCCTcgccactgcaaaatattgtgctatctTTTCAATCCCcgccactgca
aaatattgtgctatctTTTCAATCCTcgccactgcaaaatattgtgctat
ctTTTCAATCCCCGCcaatgcaaaatattgtgctatctTTTCAATCCTcg
ccactgcaaaatattgtgctatctTTTCAATCCCCGCcaatgcaaaatat
tgtgctatctTTTCAATCCTCGCCaaagcaaaatattgtgctatctTTTC
AATCCTcgccactgcaaaatattgtgctatctTTTCAATCCCCGCcaatg
caaaatattgtgctatctTTTCAATCCCcgccactgcaaaatattgtgct
atctTTTCAATCCCCGCTGAATTTTTAGGCACCAAACCAATAGAAATTAA
ATCCCCAACCATacaaaaacatgggaatatcaatccccatcgagttttgg
tccgttatttttatccccgttGGCTGAGAAAatcccactgggtctgtgag
aagggggtgttttagagtctgtaaagccttgaaattttcttaacttgagC
ATGTTCTTAATATTATCGAAGCCTGACGTTCTTATATAGTATGTTCTTAA
AAGAACGTGTATTTTGAATCTTTATTTCTTTCCTTTCACTTCTATTTTTG
GTAATTCAGCGATCGTCAAATTTTCATCTACTATTTTTTGAAGGCAGATT
CCCCGTAACTCAAAAACCAAGGGGGTTGATTTTATATAaaaagttcgagt
taaagaTTTATCAGGATTTGTGTTATAGTGAGTCGGATTCAAGCGTGTTC
AAAATTTATCTTTCTATAGGTAAATGTTCCTAATATCGAAAGTTACCCTC
ACCAATTTTGTACCCCCTTTCACAAATATCATTTATCGCCCACTTGTTTC
CAGGACTGGTCGCTTGTTATGACAGTTCTTCAAGTGATGAAAGCTCAACC
TCCACTCATTTCAAAGAAGATATTTTTGCTGACAGTGCTACTTGTATATC
TGATCCTGAAAAGAATGAAGAACCCTTTCATGAAAATACATCTGATCAAA
ATGACGGTAATCTTTCCTCTTGATCTTTTCTATCAGCTGAATATGTCCAT
ACTATGATGTGTCTTTTATAAGAAGCGTCTTAAAGTTTTTGCTAATACGA
TGTTTATTTAAAATAAGATGTGTGATCTTTAGCCGATTGGCGAATCTAac
ttaaaatttcataaaaacgtccggtaaaacacccctgtgtcacagaccca
ctgggaccccagccctactggaaaatttggcaaaaatttcgtccccggtg
ggaaaataccctggaatttcagcccaacTGGGAAATAGActgattttatc
cccactcgaaattcaaagTTTACAAATTGCGCTTCAAAACCATCCTGGAT
TTTTTGGgattggaacaatagaatttctatctccAGGAAATGAAGGTATC
TTTCTTCCTTTCTCAGTTAAATATTTGAAGTAGGCCTAAAACGgccaaaa
atgactaaaaacagcaaaaatgacCAACTTCACAGTGCAGTATACATTTT
TATCCAAGAAAGATACATAAAATCTGAATACATATTAATCGGCAAGGTTC
AAATATTCCGAAAGAGTTCATGTCttgatttttaatttagaaCTATCTTT
AATTTCATACATGTTTTAAAGGAGCAAATCCGTGACAACGATTTCTGTGG
TGAAATTTCTTTGTCATTTGTCATTTCTTTTACACCCTATCAGTAgcata
atataaaaaatctgctccttaggggtgccctacgaagtgacaaaATTCAC
TACCTCGGTCGCTGGTCTGATGGgttaatttgaaaataaagaatgtttca
gctcCCCCAAGACACAATTTTGGACATTAGGCCTTCCGACGgcattgtta
ttattttctttttcttccagTAGGAAAACCGAGCAATGAACACCCTCCAA
ACCAAAAAGATTGTGTTGTTCATCTTCCCATAGGAACCATTGAAGCAACA
AAATCTCAAAAGTCTTTGCATACGTCAAAAGGTAAATTAGTATTTGATGA
TGGTTATGTTTTGAAGTATTGGGCTTTTCTAGAAGGAATTTGAAtattgg
gggtggaggatataacattctTTAGAAATTTACACCTTGACTTGATAACT
TTTGCCAGACTGCAGGTCTAActccctggacaagcatcagttgaccccct
ggatattcaGAATTACCCTCAAATGGAGTAAAATTACCCAAAAGCTTAGC
AGGTTTACCcccaaggcaaattttgtagatttttcaccacccccggacac
tatatcctccatcccccatgtaccaacattttctggaagaacaCATTACA
AGCTAGTGATCCAACTAAAACAAAACAACTAAACAACGTAGAATAATGTC
CCCGATTTTTAAATCACTGGTTTAACcctcaaaaacatattttccttTAA
TTCGAAGAAAGTCTTTGGTTCCTGGAATATCGAATTTAAAGAGAGGAATT
CCCCAAAGACTTTGAAGTGTATCGAAACAGTATGTTACTCCTTTTACTCT
CCTGACCACTCAAATTTCTTCTATATGTAACAAAAACCGTATGTCATTTT
TTAGGTAATGATTCGAACAACGAAACTAGTGGATCAGTTTTGGACTCAAC
ACTTTTATGCCAGGAAAACGATATCACCACTCGTTGCTCTCCAAATAAAG
TCCTTCCTGACCACAGAAACAATGTTTCTTCATCATCTAACCTTGCTCAT
TATTTGAACAAAGGAAATCaccaagaaaaagaaattcatactcaAGAAAT
CGTGATTGATTTTCAACCATATCAACAAACCAAAATTATTGATTCCAAGA
ATAAGAAATTTCACTTGGAACAAGAAAGAATCCGTAGCTTACAAAAACAA
ATCTCTCGTAAACTGGAAAACATTCGTTGTAGTAGTACAGTTGTAAATcg
ctttaaaaaagaaaacgctTTTACGAAACTTGATGCTGAACTCCATCATA
AACAAGAAAAGGTTCCTTCTCGTAAATTTACGAAATTTCCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028014-exon-sc0000661-1491911889:74685..74860 | TCONS_00028014-exon-sc0000661-1491911889:74685..74860 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1510915933:74685..74860 | TCONS_00028014-exon-sc0000661-1510915933:74685..74860 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1575043694:74685..74860 | TCONS_00028014-exon-sc0000661-1575043694:74685..74860 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1491911889:76138..76290 | TCONS_00028014-exon-sc0000661-1491911889:76138..76290 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1510915933:76138..76290 | TCONS_00028014-exon-sc0000661-1510915933:76138..76290 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1575043694:76138..76290 | TCONS_00028014-exon-sc0000661-1575043694:76138..76290 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1491911889:77158..77265 | TCONS_00028014-exon-sc0000661-1491911889:77158..77265 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1510915933:77158..77265 | TCONS_00028014-exon-sc0000661-1510915933:77158..77265 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1575043694:77158..77265 | TCONS_00028014-exon-sc0000661-1575043694:77158..77265 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1491911889:77839..78277 | TCONS_00028014-exon-sc0000661-1491911889:77839..78277 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1510915933:77839..78277 | TCONS_00028014-exon-sc0000661-1510915933:77839..78277 | Clytia hemisphaerica | exon |
| TCONS_00028014-exon-sc0000661-1575043694:77839..78277 | TCONS_00028014-exon-sc0000661-1575043694:77839..78277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000661 | supercontig | sc0000661:74685..78277 + |
Blast
The following BLAST results are available for this feature:
|
