TCONS_00028017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028017
Unique NameTCONS_00028017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028017 ID=TCONS_00028017|Name=TCONS_00028017|organism=Clytia hemisphaerica|type=transcript|length=922bp
GCTGACTCAGCTTTTGGTACCTAAATAATGGCTCAACATAATGCGAGCCT
GTAACAAGGTTAAAACACCTACTGATCTCAGAACCACTGTATCAAAGCTT
TCAAGTCAATATAAACGGTACAAAACGTTCGACTTTTAAACAAGTATGTC
CGACTCATCTTTCGTGATCGGGATCGATGTCGGAGGAACAAACACCGATG
TCGCGATCGTGCAAGGTCACAAAGTCGTCGGTTGGAATAAATCTTCTACA
ACTCCAAACATCATTGATGGTGTTATACAGTCTATCGAGAAATCGTTGAA
AAATACTCAAGAAAATGGCTACCCGAACGTTCGAAACGAAATTGCAAGAA
TTAGTATCGGGACCACGCATTTCATTAACGCAGTCATCAAACGAACTGGA
CTCACAAAGACAGCCTGTATCAGACTATGTGGAGTGTCATCTCAAGCTCT
TCCCCCCTTTACTGACTTCCCTAAAGACCTGAAAGAAAAGATTAATGGCG
GTAGTTATTTGTTGAACGGAGGTTTCGAATTCGATGGTCGTGTCATCACA
GAAGTTGATGAACAAGAAATCATTGATGTCATCACAGCGATTCAACAAAA
TGGTGTTGAACACGTCGCCATTTCTGGTATATTTTCCCCGATGAACGATT
CCCAAGAAAGACTCGTCAAAAGACTAATCAATAAACATGCACCAGAATTG
ACATGCACAACATCCTGTTCCCTTGGTTATCTTGGTTTATTGGAACGTGA
AAATGCTACTATTTTGAATGAAAGTTTGAAGGAATTATGTCAGAAAACAA
TTTCCGGTTTCCGCAAAGCCTTGTCCGATATTGGATTGAATTGTCCGATG
TTTTTCACTCAAAATGATGGTACACTGATCAGTGAACAGCAGACTTTAGA
TTTTCCAGTGTTCACTTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000661:100603..103549+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028017 ID=TCONS_00028017|Name=TCONS_00028017|organism=Clytia hemisphaerica|type=transcript|length=2947bp|location=Sequence derived from alignment at sc0000661:100603..103549+ (Clytia hemisphaerica)
GCTGACTCAGCTTTTGGTACCTAAATAATGGCTCAACATAATGCGAGCCT
GTAACAAGGTTAAAACACCTACTGATCTCAGAACCACTGTATCAAAGCTT
TCAAGTCAATATAAACGGTAAGATTTCGGGGACGAGTACATACctattta
taagaactagtAAATTTTGACTGAGGCTTGgcagttttagtttttttatg
ttttttctggtttaattttttttatgcgTTAAGATTTTAAAGAATTGCGT
GAATGCGCGAATTGGAAACCTTTTTATGAACAAAAATCGCGTGAATTGTG
AAAAAATatacgtgaatgcgtgaatttggaaaAGGAATTGCGTGATCGCG
TTcgaattgaaggtccgctggggggaGGGCTCTTATAATGTTCTAAATAC
GCTGAATATATTGACTAATTGGCTTAAAACAGGTTGGGATATATGTTCTT
AGTCTGTTctgaaattttaaaacacatATTCTGAGTGTGACGTTCAACTA
ATCATTGTTAAGGTACAAAACGTTCGACTTTTAAACAAGTATGTCCGACT
CATCTTTCGTGATCGGGATCGATGTCGGAGGAACAAACACCGATGTCGCG
ATCGTGCAAGGTCACAAAGTCGTCGGTTGGAATAAATCTTCTACAACTCC
AAACATCATTGATGGTGTTATACAGTCTATCGAGAAATCGTTGAAAAATA
CTCAAGAAAATGGCTACCCGAACGTTCGAAACGAAATTGCAAGAATTAGT
ATCGGTATACTAACCCTTTTTGTATCTTATTTATTTGAGTAGGTAAAAAC
ATCTTGGGGGAGGCTCTCCAAACGTGTGCAAAGGGTTTATAATCCTTTCA
TCGCAAAGGGTTTATCATTTATGCTTTTCGCACTGATAAAGTTGCTTAGC
TACCACGATGTTTAGAAATTAGCGTTTTCGAAATTATTTTACTTTTGTGC
TAAACAGACTCGATACTTGGCAACCGGGTAGCTGATCTCCACCAACTCAG
AGAATGAGTAGCTTAGGCTGAGTAATCAAACCTACACTATAATTGGGTGC
TCTAGTACCTGATCACCGCCAAAATGGGCAGCTTAGGTTGGGTATAATGC
GACATAAACATTAGATAACTGGGTGCTACATGAGTAGATTAGGTGTTGCT
GCTCAAATCGGCTTTCGATCTCccaaatctttcttttcaaGCCACTCAAA
GAACATGTTAACACTTTTAGATCTTGTCCAGTTTTCATTTTGGCTATACT
ATTTTTGCTGCTTTTCAGAACTTATTCAACTTTCGGAAAGCTTAAATTAG
AGTCTTAAATTCAAACCTCTATAAATCGAATGTCTTTTTAACTCAAGTAA
GTTTCatgatcccttcagttaacaatgccttataaaccttactccataac
tcgaaatttatTTAACTTGTATTCCCTGTacatgttcgagttatggagac
tccactgtattatATAAATTACACATTATATGTTGACTTGTAGGGACCAC
GCATTTCATTAACGCAGTCATCAAACGAACTGGACTCACAAAGACAGCCT
GTATCAGACTATGTGGAGTGTCATCTCAAGCTCTTCCCCCCTTTACTGAC
TTCCCTAAAGACCTGAAAGAAAAGGTACGTCGTTTTAACGTTTGCCTAAT
GGTCATTATGGACGCTGTTTTAGCCTGGATGCCTGGGTCAATCACATAAC
TTTAATGTCTCAAAAGACTACAATACAAGGGAATAGCTTTAAAACCATAA
TACTCTTACAAGTACCCAAAGAATCTGGCGTAATTCGagtaatagaagtt
cgaattagcgagagttcaTTGTACCTATATGTGACCTATTAATATAATAT
TAACATCATATCTCTGCTCTTATCAAAAGTTTCAAGGTTTACAGTAAAGA
ATTGACTTGTTCAATTAATGATTCGTCCTTCAGATTAATGGCGGTAGTTA
TTTGTTGAACGGAGGTTTCGAATTCGATGGTCGTGTCATCACAGAAGTTG
ATGAACAAGAAATCATTGATGTCATCACAGCGATTCAACAAAATGGTGTT
GAACACGTCGCCATTTCTGGTAAATTTAGCTAGAATCCCCACCGTAATAT
TTGGTACAAAAGGCGAACTCcctcaatatattttggcacCGATTGTAGAA
TACATCACTGATCCAGTACCACTGATAGAAGCATTTTGAAGTTGGCTTAG
GGGAATTAGTGACGCCACAAGGACCAGCCGAATGAGAGGAGGGgcaattt
gaaaatttagttCAAAATGGCTGGAAATGGGATTATTATTACCAAGTCAG
GATAATCAAGCATTATACAAAAACCTTCCGGCCGGCTTAAGAGTctcgtt
ttaaaattatttatctaattatttaaaaatttcgttTCAGGTATATTTTC
CCCGATGAACGATTCCCAAGAAAGACTCGTCAAAAGACTAATCAATAAAC
ATGCACCAGAATTGACATGCACAACATCCTGTTCCCTTGGTTATCTTGGT
TTATTGGAACGTGAAAATGCTACTATTTTGAATGAAAGTTTGAAGGAATT
ATGTCAGAAAACAATTTCCGGTTTCCGCAAAGCCTTGTCCGATATTGGAT
TGAATTGTCCGATGTTTTTCACTCAAAATGATGGTACACTGATCAGGTAA
CTATGtagaaatttcatttctttcaggTTTGAGTGTGGACTGAAATAGTT
CATAGTACGTGTTATACAGTAACATATATGTGTAATATGATAATACGGTA
ACTGTTGTTACTTAGTGTTAGTGCATAATATCCTTCAGTTTTCCTTAGCA
TGCTCTACCGAGTATGGCTGCCACATTTCTCGAAAAAAGTTACGACAATC
TTCCTTGCTCCCTTAATGTTTATATcatcaacaaaaaaatattttctttc
ttaaaagTGAACAGCAGACTTTAGATTTTCCAGTGTTCACTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015856XLOC_015856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028017-exon-sc0000661-1491911889:100603..100719TCONS_00028017-exon-sc0000661-1491911889:100603..100719Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1510915933:100603..100719TCONS_00028017-exon-sc0000661-1510915933:100603..100719Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1575043694:100603..100719TCONS_00028017-exon-sc0000661-1575043694:100603..100719Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1491911889:101115..101356TCONS_00028017-exon-sc0000661-1491911889:101115..101356Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1510915933:101115..101356TCONS_00028017-exon-sc0000661-1510915933:101115..101356Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1575043694:101115..101356TCONS_00028017-exon-sc0000661-1575043694:101115..101356Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1491911889:102096..102226TCONS_00028017-exon-sc0000661-1491911889:102096..102226Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1510915933:102096..102226TCONS_00028017-exon-sc0000661-1510915933:102096..102226Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1575043694:102096..102226TCONS_00028017-exon-sc0000661-1575043694:102096..102226Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1491911889:102536..102671TCONS_00028017-exon-sc0000661-1491911889:102536..102671Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1510915933:102536..102671TCONS_00028017-exon-sc0000661-1510915933:102536..102671Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1575043694:102536..102671TCONS_00028017-exon-sc0000661-1575043694:102536..102671Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1491911889:102993..103248TCONS_00028017-exon-sc0000661-1491911889:102993..103248Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1510915933:102993..103248TCONS_00028017-exon-sc0000661-1510915933:102993..103248Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1575043694:102993..103248TCONS_00028017-exon-sc0000661-1575043694:102993..103248Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1491911889:103510..103549TCONS_00028017-exon-sc0000661-1491911889:103510..103549Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1510915933:103510..103549TCONS_00028017-exon-sc0000661-1510915933:103510..103549Clytia hemisphaericaexon
TCONS_00028017-exon-sc0000661-1575043694:103510..103549TCONS_00028017-exon-sc0000661-1575043694:103510..103549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000661supercontigsc0000661:100603..103549 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.231609	0.293366	0.343121	0	0.0325214	0	0.55347	0	0.307443	0.468821	0.161352	0.931268	1.70359	1.33919	1.12006	0	0.946076	2.25167	0.868285	0.849578	0.10521	0	0	0	0.0527057	0	0	0.351826	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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