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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028069 ID=TCONS_00028069|Name=TCONS_00028069|organism=Clytia hemisphaerica|type=transcript|length=1744bp
GTAAAAAATCGTCTGAATTAGAAGACTGGttaaaacattgaatttttaGA
TAAAACTTCTCTAGAACATAACTATTAAGTTACCGAAAAACAGTCTCCAA
TACCAGAGATGGAAGTTCCATTATACAGGAATATGGAGTTAGCGGGATTT
AAAATAGTGTTGTCCTTATTGACAGCATTTTGGATTCAACAACCATGTTA
CGGGGTGAATATAGCAAGTCTCGAAAACATTAATATGACAGAATATGAAA
AAGTGACGCTACCATACCTACACGACAACAACAAGACGGTTGAAGTTAAC
GTATCAATGTATATTTTGAATATTGGAAATATGAATACACGAGAAATGAC
ATTTGAAGTTGAGATGTATTTCAGCATGAATTGGACAGACCCGAGGCttg
cttttgaagaatatcATAATGCATCTTATGCACTTGTGACAGGTGAAATT
GCATATGAGAATATTTGGGTACCCGATCTCTTCATTCGAAACATGAAGTT
CGTTGAAAGCAGTAAATTCCTGAAAGATCTGTCCGGAGTGATGATCTACC
CTGATGGAGTCATTACTTTATCAAGTCGTTTGAGAGTTGTTGCACACTGT
GAAATGGATCTATTGATGTTTCCATTGGATTCTCAGAGCTGTAACTTGAT
GATAGAATCGTACCTCTATCATACCGATGTCATGAAAACTTATTGGGCCG
AAGACCCAATAGTGGTGGACAAGAGAAGAGACGGAAGAAAAACAGAAATC
GATACTTGGATGGGTTTCACTCTAGAAGAAACTAAAACCGCGTACAACAG
ATACATATATCCACTTAATGGGCTTGAATTTCATTACATGATTgcaactt
ttgttttgaaacggGAGCCACAATACTACATTCTAAGGGGTTTTATACCA
AGCTCCTTACTTGTCTGTCTGACTTGGGCAAGCTTTTGGATACCAACAAC
AAGCTATCCAGCTAGAATTGGTATCGTGGTAACATCATTCTTGGCATCTA
TCGTCCTTTACACTGGATCAACGCTGGATTCTCATCAGATGACAGTGAtg
caaatgtttttatttggaaACATCGCATTTATTGGTTTAACTTTGATCGA
ATTTCTGATGGCAATTAGGTCAGACAAGAAACGGAAGATGAAGCAGAAAG
TGATAATTGCGATTGACTTGATAAAGGAAGACAACCAGACGATCGAAAAA
GCAGACTCAAAAACATCCGATGTTGGAAAAGAGAAGGAAAATTTAGTGGA
CAAACGAGCTCGTTATATCATTCCATTTGTTTATTTGCTTTATCTGGCAA
TATTTGTTGCTGTAATCATGTTTCATTGATGCTTAAGAAAGGCAGTGTAG
CTCAGGTCAAGTCAAGTCTGCAACCGTAGTCGGAAACGACCTGAAGGCTC
CTCAATTTCGGTAGCTATCTACGCGaagggagggcgccactctctCTCta
tggatttctccacttacccttgatccttctcttttaTTACGAAGCATtta
gcagagaggcatcaagtaccattttgggatcTTTGATGAGACCAAGCCAG
AGATTGAAACCACGACCTTGCACACCGTTGCCGAACAAGTTAAACAAATT
TCAGCTTCATGAAAACTAGCACATTTGCAAAAAGGGGATGTCACACGTTT
TCCTGGTGGTCTAAAAGCAGGGAAATCAATAGCATTCATGGTTCAATACC
TTGCGGTAGACTTAAGTATTTAACCAACTTTAGTTATGTTATGC Run BLAST on NCBI transcript from alignment at sc0000662:86347..90592+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028069 ID=TCONS_00028069|Name=TCONS_00028069|organism=Clytia hemisphaerica|type=transcript|length=4246bp|location=Sequence derived from alignment at sc0000662:86347..90592+ (Clytia hemisphaerica)
GTAAAAAATCGTCTGAATTAGAAGACTGGttaaaacattgaatttttaGA
TAAAACTTCTCTAGAACATAACTATTAAGTTACCGAAAAACAGTCTCCAA
TACCAGAGATGGAAGTTCCATTATACAGGAATATGGAGTTAGCGGGATTT
AAAATAGTGTTGTCCTTATTGACAGCATTTTGGATTCAACAACCATGTTA
CGGGGTGAATATAGCAAGTCTCGAAAACATTAATATGACAGAATATGAAA
AAGTGACGCTACCATACCTACACGACAACAACAAGACGGTTGAAGTTAAC
GTATCAATGTATATTTTGAATATTGGAAATATGAATACACGAGAAATGAC
ATTTGAAGTTGAGATGTATTTCAGCATGAATTGGACAGACCCGAGGCttg
cttttgaagaatatcATAATGCATCTTATGCACTTGTGACAGGTACTTCT
ATTCTACTTTTTTAATTATATAGGTACCTGtcagggaaaacttcgtcggg
gaaaagtgacgaaattttggcaagtgacgaatatttttcccgacgataat
tttccccggccttaatgcgtttaccaactactaACAAGTGGCGAATATTT
TCCCCggcgaagttttccccgataaagtaACTAATCTTGGCAGGAATTAA
TTATGGCAAAACAAGTTCTCcccaaaataaaagaataatttaTGGCTCCA
CTGAAATtaaattacacccctgtctcacagccccggcggaacttttttcc
tcagtggggataaaaattcctattgagatcctaatggggataaaaacttc
tattgaaatcccaatgggatagaaattctattgttcttaggttaaaaaat
ccagtggggatggttttggatgcaatttttaaacatggaatttggAGAGG
GGATGATATCAAAATCAATCTCCCAGTGGTGCTGAAATTCAAAGGTTTTc
ccgacgaaatttttgcttaattttccgGTGGGGCTGGAGGGGTCCaaacg
ggtctgtgacacaggggtgttaaattTCTTCGTATTTTTCCAAAATAGCA
CATAAATATAGTTCAAAGCtcattttctggcaaaaaaaaaaacaacacaa
gTAATTCACCATGCCATTTAACAAAATTAATTCTcactaaaattaaaaat
tagcgCTATTTGCCAAAGTTACTTCTCGAGTCTAGAGTTATTTCGAAAGC
CTATTTCCTAATTCTATATCAACTATCCTACAATAATCGTGGCACGTGTG
CTAAAATGTGCGTGTACTAACAGTTTGTGAGAGATCAAGTGAGCCCAACG
GAAAATACTTAGGATGCAGCATCAGACTCATTGAGTCCTCAAAATTTTTT
AGGTGAAATTGCATATGAGAATATTTGGGTACCCGATCTCTTCATTCGAA
ACATGAAGTTCGTTGAAAGCAGTAAATTCCTGAAAGATCTGTCCGGAGTG
ATGATCTACCCTGATGGAGTCATTACTTTATCAAGTCGTTTGAGAGTTGT
TGCACACTGTGAAATGGATCTATTGATGTTTCCATTGGATTCTCAGAGCT
GTAACTTGATGATAGAATCGTACCTCTATCATACCGATGTCATGAAAACT
TATTGGGCCGAAGACCCAATAGTGGTGGACAAGAGAAGAGACGGAAGAAA
AACAGAAATCGATACTTGGATGGGTTTCACTCTAGAAGAAACTAAAACCG
CGTACAACAGATACATATATCCACTTAATGGGCTTGAATTTCATTACATG
ATTgcaacttttgttttgaaacggGAGCCACAATACTACATTCTAAGGGG
TTTTATACCAAGCTCCTTACTTGTCTGTCTGACTTGGGCAAGCTTTTGGA
TACCAACAACAAGCTATCCAGCTAGAATTGGTATCGTGGTAACATCATTC
TTGGCATCTATCGTCCTTTACACTGGATCAACGCTGGATTCTCATCAGAT
GACAGTGAtgcaaatgtttttatttggaaACATCGCATTTATTGGTTTAA
CTTTGATCGAATTTCTGATGGCAATTAGGTCAGACAAGAAACGGAAGATG
AAGCAGAAAGTGAGTGTTCAATAATAATTTTCTAGAGCGCTGTGATAAAA
TGATGATTGACTAAgcaaatattttatcaataaGATCTATTTACCTCAAT
ATGCTATAGATTCACCTGGTTGATTCATTATTATTTATCGAAAAATGCAT
CGTAAAAGGAGAAGAAATGGGGTAAACAAAACTAAAGCTAATTGTCGTCA
TAAACTATCTGTTTTATTAATTTTAGGTGATAATTGCGATTGACTTGATA
AAGGAAGACAACCAGACGATCGAAAAAGCAGACTCAAAAACATCCGATGT
TGGAAAAGAGAAGGAAAATTTAGTGGACAAACGAGCTCGTTATATCATTC
CATTTGTTTATTTGCTTTATCTGGCAATATTTGTTGCTGTAATCATGTTT
CATTGATGCTTAAGAAAGGCAGTGTAGCTCAGGTCAAGTCAAGTCTGCAA
CCGTAGTCGGAAACGACCTGAAGGCTCCTCAATTTCGGTAGCTATCTACG
CGaagggagggcgccactctctCTCtatggatttctccacttacccttga
tccttctcttttaTTACTAAGCATttagcagagaggcatcaagtaccatt
ttgggatcTTTGATGAGACCAAGCCAGAGATTGAAACCACGACCTTGCAC
ACCGTTGCCGAACAAGTTAAACAAATTTCAGCTTCATGAAAACTAGCACA
TTTGCAAAAAGGGGATGTCACACGTTTTCCTGGTGGTCTAAAAGCAGGGA
AATCAATAGCATTCATGGTTCAATACCTTGCGGTAGACTTAAGTATTTAA
CCAACTTTAGTTATGTTATGCCAAGTTACGTAACTTTTATGATTTATCTA
AATTTGTATTGAGTGAAACATAAAaagcttcattttttttaaaaatttgt
tttgattaatcTAAAACTTTTCTAAGTTTAAaaccaaaaaccaaaaatat
aatTTAGTCTAGACAGTGACAGGTGGTCATGTGGTTATTTATCATCATGC
AAATCCAAAAGAAAATGCAATAACAAATTCATGACTTCTCCTTGATAAAC
TTAATGTAATTACTTATTAATGAAGTAATGACAAAATCAAtactcaaatt
tatgaaatcttTATCTCTGATACACCCACATGTGGGTTGACTTTGTTGTC
AAGGCAACTGACACCTCCCACTAAGTCAAATCATTACCAAGAGATGAGGA
AGCTTCATACAAGGCGAGCCTTTGATGCTTTAAGagaagttttttatttt
gaaaaggaaaattgaCCAAGTATTCTGGAATCAATAACAAACTggatttt
aaaaacctttggcTACCgcaaaatgaaatttaattatGGATTTACAGGGA
GGGGTTTTAAAAACCTGAGATTAGACAATCTCTGATTTTTTTCCTCATTT
GTTTattaattattgaaaatattgtNAACGATTGACTAAgcaaatatttt
atcaataaGATCTATTTAACTCAATATGCTATAGATTCATCTGGTTGATT
CATTATTATTTATCGAAAAATGCATCCTAAAAGGAAAAGAAATTGGGTAA
ACAAAACTAAAGCTAATTGTCGTCATAAACTATCTGTTTTATTAATTTTA
GGTGATAATTGCGATTGACTTGATAAAGGAAGACAACCAGACGATCGAAA
AAGCAGACTCAAAAACATCCGATGTTGGAAAAGAGAAGGAAAATTTAGTG
GACAAACGAGCTCGTTATATCATTCCATTTGTTTATTTGCTTTATCTGGC
AATATTTGTTGCTGTAATCATGTTTCATTGATGCTTAAGAAAGGCAGTGT
AGCTCAGGTCAAGTCAAGTCTGCAACCGTAGTCGGAAACGACCTGAAGGC
TCCTCAATTTCGGTAGCTATCTACGCGaagggagggcgccactctctCTC
tatggatttctccacttacccttgatccttctcttttaTTACGAAGCATt
tagcagagaggcatcaagtaccattttgggatcTTTGATGAGACCAAGCC
AGAGATTGAAACCACGACCTTGCACACCGTTGCCGAACAAGTTAAACAAA
TTTCAGCTTCATGAAAACTAGCACATTTGCAAAAAGGGGATGTCACACGT
TTTCCTGGTGGTCTAAAAGCAGGGAAATCAATAGCATTCATGGTTCAATA
CCTTGCGGTAGACTTAAGTATTTAACCAACTTTAGTTATGTTATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028069-exon-sc0000662-1491911889:86347..86788 | TCONS_00028069-exon-sc0000662-1491911889:86347..86788 | Clytia hemisphaerica | exon |
| TCONS_00028069-exon-sc0000662-1510915933:86347..86788 | TCONS_00028069-exon-sc0000662-1510915933:86347..86788 | Clytia hemisphaerica | exon |
| TCONS_00028069-exon-sc0000662-1575043694:86347..86788 | TCONS_00028069-exon-sc0000662-1575043694:86347..86788 | Clytia hemisphaerica | exon |
| TCONS_00028069-exon-sc0000662-1491911889:87699..88405 | TCONS_00028069-exon-sc0000662-1491911889:87699..88405 | Clytia hemisphaerica | exon |
| TCONS_00028069-exon-sc0000662-1510915933:87699..88405 | TCONS_00028069-exon-sc0000662-1510915933:87699..88405 | Clytia hemisphaerica | exon |
| TCONS_00028069-exon-sc0000662-1575043694:87699..88405 | TCONS_00028069-exon-sc0000662-1575043694:87699..88405 | Clytia hemisphaerica | exon |
| TCONS_00028069-exon-sc0000662-1491911889:89998..90592 | TCONS_00028069-exon-sc0000662-1491911889:89998..90592 | Clytia hemisphaerica | exon |
| TCONS_00028069-exon-sc0000662-1510915933:89998..90592 | TCONS_00028069-exon-sc0000662-1510915933:89998..90592 | Clytia hemisphaerica | exon |
| TCONS_00028069-exon-sc0000662-1575043694:89998..90592 | TCONS_00028069-exon-sc0000662-1575043694:89998..90592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000662 | supercontig | sc0000662:86347..90592 + |
Blast
BLAST of TCONS_00028069 vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 4.545e-32 Identity = 89/306 (29.08%), Postives = 159/306 (51.96%), Query Frame = 1
Query: 277 NNKTVEVNVSMYILNIGNMNTREMTFEVEMYFSMNWTDPRLAFEEYHNASYALVTGEIAYENIWVPDLFIRNMKFVESSK-FLKDLS--GVM--IYPDGVITLSSRLRVVAHCEMDLLMFPLDSQSCNLMIESYLYHTDVMKTYWAEDPIVVDKRRDGRKT-EIDTWMGFTLEETKTAYNRYIYPLNGLEFHYMIATFVLKREPQYYILRGFIPSSLLVCLTWASFWIPTTSYPARIGIVVTSFLASIVLYTGSTLDSHQMTVMQ---MFLFGNIAFIGLTLIE-----FLMAIRSDKKRKMKQKV 1152
+ V V + + ++ +++ +M F + +Y W D RL+F +N S G + + IWVPD+F FV S + F+ D + VM + PDG + S R+ V A C MD FPLD+Q+C+L IESY Y D + YW K D KT E + F ++E T Y G ++ + F L+R +++L+ + P++L+V L+W SFWI + PAR+ + +T+ L + TG +++ ++ ++L+ + F+ L+++E +L ++ K++K+++K+
Sbjct: 93 GGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLSMTF-DGRLV-KKIWVPDMF-----FVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWK-------KGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGW-YNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKEQKLREKL 383
The following BLAST results are available for this feature:
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