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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028073 ID=TCONS_00028073|Name=TCONS_00028073|organism=Clytia hemisphaerica|type=transcript|length=1835bp
AAGAAACACTGTAAATTAATGAGATgacttagaaaaaaatcaagtcAAAT
CAATAGCTTAATAATATCAATTATTcacaatttttctcaatttaatcAAA
TTGGATATGAAGCAAGCAGCTAAAACAAAATTGACCTATACAAAATCATA
TAATGTAAATTGTAAAGATATGTAAAACAGTCTTAAGATTTCGTTTTTAC
AAAACTCAAGATGGAGGTTATGAAGGTTTCACTTCTTTTCGTGTTGTTGA
TACAATTATGCGATGGACAAAACATAGCAAATATTGAAGACATAAGCCTG
GCAAACTATAGTAAAGTTGCCACACCTTATTTATCTAACCCTAATAAAAC
AGTTGATGTTTACATATCGATGTTCATATTGAACATTGGTAATCTGAACA
CAAAGGAGATGACTTTTGAGACTGAAAtgtattttgaaatgaaatggaAA
GATCCAAGATTGGCATTCCAAGATTATCACAATGCTACTTATGCTCTTGT
GTCAGGAGAGACAGCTTACGAGAAAATCTGGGTCCCAGACCTCTTCGTTC
GTAACATGAAGGAGGTTGAAAACAGCAAATTTCTGACTGACCTTTCCGGC
GTAACAATCAACCCAGATGGTTTGGTCGAGCTGTCGAGTAGAATCAGAGT
GGTGGCACATTGTGAAATGGATCTATTTATGTTCCCGTTTGACTCTCAAT
CGTGTAATATCATGATCACTTCCTATCTTTACAATACGGCTGTCTTGTCA
ATGTATTGGAGTGAAAACCCAGTGGTGATTGATGAGAAGCGAGATGGCCG
AGAAACAAAGATTGAAGGTTTCATGGGATTCCAACTGACACGGTCATTGA
CAAGAGAAGATAGCTATCTGTATCCATTGAGTGGATTGAGATATCAATAC
ATGATTGCAACTTTTGTGTTAAAGAGAGAACCACAGTACTACATTCTCAG
AGGTTTCATCCCAAGCTCATTGTTGGTCTGCCTAACATGGGCAAGTTTTT
GGTTACCCACATCCAGCTATCCAGCCAGGGTAGCACTTATAGTGACGTCA
TTCTTGGCGTCAATTGTATTATATCAAGGTTCTACATTACACTCTATTCA
GATGACAGTGATGCAAGTGTTTTTGTTTGGCAATATTTCCTTCATTATGG
TCACTTTGATGGAGTTCCTGATGGCCGTCAAAGCAGATCACGAGAAGAAA
GAGAAAACAGAGcttGTACCTACGATCcggaatgaaattttcaacagcGC
AAACGAAACGCAAGAAAATGAATTCTGGCCAAAGGAGAAGAAAAACATGA
CAAGTGCAGTCGACGTaggtaaaaatcaaaccaatgaaaatgaaaggaaA
TCAACGACACGCAATAAAGAAAAGACGGAAAATTCGGTTGATCGGAAAGC
CCGGTTTATCATCCCaattctttatttcatttatgtTGGAGTATTTGTTG
CagctttatttttcttaaatcaagaataaaaatgtcctattTTGATATCA
CGCAGAGAAGTCGTGGAAAGAGATTGGAAATTGCTCTTAACTTAAAATTT
CATGTCTTTCAAAACGAAGGCAAGGATCGGCGAACAGCAGTAGCTTGACA
AGAGGAAGATTAAATCCGAGCAAAGAATACTTTACAGCTAAACAAACGAT
TCACATTAAAATCTGGTGATTGCTAgacaaacatgaaattttgagtATAA
AGATGCTAGTAATGTGTAATTGGGCAATTGAGCACTTTATTTATCCTAAT
TCGTTATTTAATGTCGtagttaacaattttgtaatatgATAATATAATCA
TTTTCATGCattttcaaatatcaaataaatCTTAC Run BLAST on NCBI transcript from alignment at sc0000662:95563..99832+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028073 ID=TCONS_00028073|Name=TCONS_00028073|organism=Clytia hemisphaerica|type=transcript|length=4270bp|location=Sequence derived from alignment at sc0000662:95563..99832+ (Clytia hemisphaerica)
AAGAAACACTGTAAATTAATGAGATgacttagaaaaaaatcaagtcAAAT
CAATAGCTTAATAATATCAATTATTcacaatttttctcaatttaatcAAA
TTGGATATGAAGCAAGCAGCTAAAACAAAATTGACCTATACAAAATCATA
TAATGTAAATTGTAAAGATATGTAAAACAGTCTTAAGATTTCGTTTTTAC
AAAACTCAAGATGGAGGTTATGAAGGTTTCACTTCTTTTCGTGTTGTTGA
TACAATTATGCGATGGACAAAACATAGCAAATATTGAAGACATAAGCCTG
GCAAACTATAGTAAAGTTGCCACACCTTATTTATCTAACCCTAATAAAAC
AGTTGATGTTTACATATCGATGTTCATATTGAACATTGGTAATCTGAACA
CAAAGGAGATGACTTTTGAGACTGAAAtgtattttgaaatgaaatggaAA
GATCCAAGATTGGCATTCCAAGATTATCACAATGCTACTTATGCTCTTGT
GTCAGGTACAACAAAGTTTTAAATTATACTCTTTTCAATATAATGCTGAT
ATCAGCACTCAAGGATTGGGCAGTTCCATTTAAAATTAATACATAGGGGT
GGACCAAACTTTTCAAGCAAAatagtaatttttgaaaatgtgtggatcCC
CCTGGATACCCCCTTACAAATTTGCAAAAAACCAATAGTATTCTTCATAC
CCTAAAGTTACGAACTAAATTCAATCTTTTACActctggaaattttagaa
tactTTTTTACACCctggaaaataaaacaaaatttctaaggCCCtctatg
gatataaaatggaatggccatTTTACGTGCTTtaatatttttcgtgtttt
aaaaggatttttttgaaaatgatgtccAGTCAATTGCCCCCTAGGCAAAT
TGCACCTCCCCAAATTAACAACAAAATAGGCAAACAATGACATTCAAAAG
TGTAAGTAAAATTCGGTCTGAAAAACATCGTATCACTTTACACTGACGCT
AAACCCGAAATCACTCTGTTCATAAATCcatttacagaatttcaaatccA
AATCTTAATCCAAACACTAATTCCCTCTTAAAGGGTCCCATCAAAACCAA
AAACCAAATCTCTCTTCAAATCAAAAGTGTTTCTTCTAATTACACAGGAG
AGACAGCTTACGAGAAAATCTGGGTCCCAGACCTCTTCGTTCGTAACATG
AAGCAAGTTGAAAACAGCAAATTTCTGACTGACCTTTCCGGCGTAACAAT
CAACCCAGATGGTTTGGTCGAGCTGTCGAGTAGNACATGAAGGAGGTTGA
AAACAGCAAATTTCTGACTGACCTTTCCGGCGTAACAATCAACCCAGATG
GTTTGGTCGAGCTGTCGAGTAGAATCAGAGTGGTGGCACATTGTGAAATG
GATCTATTTATGTTCCCGTTTGACTCTCAATCGTGTAATATCATGATCAC
TTCCTATCTTTACAATACGGCTGTCTTGTCAATGTATTGGAGTGAAAACC
CAGTGGTGATTGATGAGAAGCGAGATGGCCGAGAAACAAAGATTGAAGGT
TTCATGGGATTCCAACTGACACGGTCATTGACAAGAGAAGATAGCTATCT
GTATCCATTGAGTGGATTGAGATATCAATACATGATTGCAACTTTTGTGT
TAAAGAGAGAACCACAGTACTACATTCTCAGAGGTTTCATCCCAAGCTCA
TTGTTGGTCTGCCTAACATGGGCAAGTTTTTGGTTACCCACATCCAGCTA
TCCAGCCAGGGTAGCACTTATAGTGACGTCATTCTTGGCGTCAATTGTAT
TATATCAAGGTTCTACATTACACTCTATTCAGATGACAGTGATGCAAGTG
TTTTTGTTTGGCAATATTTCCTTCATTATGGTCACTTTGATGGAGTTCCT
GATGGCCGTCAAAGCAGATCACGAGAAGAAAGAGAAAACAGAGGTAACGT
TTAGTAGAAAGTTACCTTGGAGACATTCTTATTCTTGATATGTGTAAgtt
aagattacgtcattttcccTATCAGAAACACCCGAAAACACATTAGCAAC
ACAGGGGTCAAAgtttttttcgggtgtttccgatccgaaaaatgacgtaa
tcttgacttgcgcatatcaagaatttcaAAGGTTGTTTTTTACCCCAATT
CTTCGACCTCGAAACTGGCTTCCTTTTTCACATAATCTGCCCCCTTCCCA
ATATGAAGATACCGAGGGTAAGATTTATagagaagatgaaaatgaaccTC
AAAATGAAATGCCCTTACGAATTATATACAAGTAGATGAAGTCATAATAC
TGACAGAAGAtagaaataaatagaaagttgaATAATAATATTTTCTGATT
GTTTTCTTTTCCTTAAACTTTCATCATAgtcattttataaaaacactggt
ctagaaggcttttgtctcgttttattgttaaaagatggatagtaaggtcg
tttagcataatttacaggaaaaaaataatatatagctgaaactttctcca
gaccttctctataggatacttatgcctcaggaaaaaaatcCCCTagaatc
ccactggtggaacattccctttttgggcaatttctttttcccccaggcaa
aaccctaagggcgaaatgttttgaaaatttcaaactcattttcagacaat
atCAGGTATACCATTCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgaggcataagcatcctat
agagaaggtctggagaaagtttcagctatatattatttttttcctacaaa
cagcctgtacttttgtaacacgaccacactaggAGCTttcgtaccaaaat
cgatttattttgcaaacttttttgatcatgtgatcagaaaatagaccaat
cccaagaggataTTTTGGTAACgcgatcaaaaagtatgcaaatcgcaact
tgccttttgtttgtaacaaaagaaaatttaactaaaaagctAAAtaaata
cattgccagaccggggttttttataatgactattttttcattttcagctt
GTACCTACGATCcggaatgaaattttcaacagcGCAAACGAAACGCAAGA
AAATGAATTCTGGCCAAAGGAGAAGAAAAACATGACAAGTGCAGTCGACG
TaggtaaaaatcaaaccaatgaaaatgaaaggaaATCAACGACACGCAAT
AAAGAAAAGACGGAAAATTCGGTTGATCGGAAAGCCCGGTTTATCATCCC
aattctttatttcatttatgtTGGAGTATTTGTTGCagctttatttttct
taaatcaagaataaaaatgtcctattTTGATATCACGCAGAGAAGTCGTG
GAAAGAGATTGGAAATTGCTCTTAACTTAAAATTTCATGTCTTTCAAAAC
GAAGGCAAGGATCGGCGAACAGCAGTAGCTTGACAAGAGGAAGATTAAAT
CCGAGCAAAGAATACTTTACAGCTAAACAAACGATTCACATTAAAATCTG
GTGATTGCTAgacaaacatgaaattttgagtATAAAGATGCTAGTAATGT
GTAATTGGGCAATTGAGCACTTTATTTATCCTAATTCGTTATTTAATGTC
GtagttaacaattttgtaatatgATAATATAATCATTTTCATGCattttc
aaatatcaaataaatCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028073-exon-sc0000662-1491911889:95563..96067 | TCONS_00028073-exon-sc0000662-1491911889:95563..96067 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1510915933:95563..96067 | TCONS_00028073-exon-sc0000662-1510915933:95563..96067 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1575043694:95563..96067 | TCONS_00028073-exon-sc0000662-1575043694:95563..96067 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1491911889:96710..96759 | TCONS_00028073-exon-sc0000662-1491911889:96710..96759 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1510915933:96710..96759 | TCONS_00028073-exon-sc0000662-1510915933:96710..96759 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1575043694:96710..96759 | TCONS_00028073-exon-sc0000662-1575043694:96710..96759 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1491911889:96849..97505 | TCONS_00028073-exon-sc0000662-1491911889:96849..97505 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1510915933:96849..97505 | TCONS_00028073-exon-sc0000662-1510915933:96849..97505 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1575043694:96849..97505 | TCONS_00028073-exon-sc0000662-1575043694:96849..97505 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1491911889:99210..99832 | TCONS_00028073-exon-sc0000662-1491911889:99210..99832 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1510915933:99210..99832 | TCONS_00028073-exon-sc0000662-1510915933:99210..99832 | Clytia hemisphaerica | exon |
| TCONS_00028073-exon-sc0000662-1575043694:99210..99832 | TCONS_00028073-exon-sc0000662-1575043694:99210..99832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000662 | supercontig | sc0000662:95563..99832 + |
Blast
BLAST of TCONS_00028073 vs. Swiss-Prot (Human)
Match: GBRR2 (Gamma-aminobutyric acid receptor subunit rho-2 OS=Homo sapiens GN=GABRR2 PE=2 SV=5) HSP 1 Score: 119.783 bits (299), Expect = 7.369e-29 Identity = 101/369 (27.37%), Postives = 168/369 (45.53%), Query Frame = 1
Query: 445 WKDPRLAFQDYHNATYALVSGETAYEKIWVPDLFVRNMKEVENSKFLTDLSGVTINPDGLVELSSRIRVVAHCEMDLFMFPFDSQSCNIMITSYLYNTAVLSMYW--SENPVVIDEKRDGRETKIEGFMGFQLTRSLTREDSYLYPLSGLRYQYMIATFVLKREPQYYILRGFIPSSLLVCLTWASFWLPTSSYPARVALIVTSFLASIVLYQG--------STLHSIQMTVMQVFLFGNISFIMVTLMEFLMAVKADHEKKEKTELVPTIRNEIFN-------SANETQENEF--WPK------EKKNMTSAVDVG-KNQTNENERKSTTRNKE-----KTENSVDRKARFIIPILY----FIYVGVF 1446
WKD RLAF N + G +KIWVPD+F + K TD + + PDG V S RI V A C MD FP DSQ+C++ + SY Y L +YW + + DEK + I+ F T L Y +G Y + F L+R +++L+ + P++L+V L+W SFW+ + PARV+L +T+ L + G S + ++ + + F+F +S + + +L V+ E+K + E P + + + S +E++ N +P+ E++ V +G + N +K + + + +++D+ +R I P Y IY VF
Sbjct: 108 WKDERLAFSSASNKSMTF-DGRLV-KKIWVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQ---KFHTTSRLA-----FYSSTGW-YNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMTTIITGVNASMPRVSYVKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLR-EKFPCMCGMLHSKTMMLDGSYSESEANSLAGYPRSHILTEEERQDKIVVHLGLSGEANAARKKGLLKGQTGFRIFQNTHAIDKYSRLIFPASYIFFNLIYWSVF 464
The following BLAST results are available for this feature:
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