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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028076 ID=TCONS_00028076|Name=TCONS_00028076|organism=Clytia hemisphaerica|type=transcript|length=1495bp
AAaggtaataaaaaattaaaattctgtaaaataataaaacttgaagcttg
aaataaaaagtatattCACCAAGCCAAATAGGTTTTCAACTTCaataaaa
ttggtcaaaatgaTGTACTTTAACAATATTAAAGCCTTCACAGTAATTTG
GGGGCTCCAAATGTATTGTTGCTACGGACAACTGGctagtttgaaaaata
taaacatgACAGGTTACAGTAAGGTCTCAATACCTTATTTAAAAAACCAC
AATAAAACTTTGGACGTTCTAACCTCGATTACAGTTTTGAACATTGGTAA
TTTGAATACGGAAGAAATGACATTTGAagttgaaatatattttgatatga
AGTGGATGGACCCAAGATTGGCTTTCAAAGAATACCTAAATGCTTCGTAT
GTCCTTGTCCCAGGGGAGACTGCATATCAGCACATATGGGTTCCCGACCT
ATTCATTCGCAATATGAAATTTTCTGAAAGCAGCACATTTCTGACTGACC
TATCTGGAGTCATTATCTATCCAGATGGCTTTGTTACTTTATCAAGTCGA
ATGAGAGTGGTGGCGCATTGTGAAATGGATCTACTGATGTTTCCACTAGA
TTCCCAGAGCTGTAATTTGATGATTGTTTCCTTCAATTATGATACAACGG
TATTGAGGTCACTATGGGGTGAAAACCCGGTAGCAGTTGATACAATGAGA
GATGGTAGAAAGTCACAAATTGATACTTGGATGGGATTGAAGCTTGTGGA
GACATTGACAACAGAAGGAAGTTATGTCTACCAAAACAGTGGTCTCAAAT
TCCAATACTTGATTGCAACTTTTGTTTTGGAAAGACAAACCCAGTACTAC
ATCCTCAAAGGCTTTATTCCAAGCTCATTACTGGTCTGTCTGACGTGGGC
AAGCTTTTGGCTACCAACAACAAGCTATCCAGCTAGAGTGGCACTTATCT
TGACCTCATTCTTGGCGTCTATTGTGCTCTACCAAGGCTCATCCTTACAT
ATCAATCAGATGACAGTCATGCAAGTGTTTTTATTGGGAAATATTGCTTT
GATTGGATTAACCCTACTTGAATACTTGCTAGCAGTAAAAAAAGAACACC
AGATTGTTAAGATGAAATCAATCGTGAATCAAACGAAAGGTGCGAAAGTA
AAAGGAGTTTTAGCAcacaacaaaaagaaaatggtCAACCCAGTAGATCA
GAAAGCGCGGTACATCATCCCTCTTATCTACATGGTGTTTATCGTGACTT
TTGTAATTTCGGTGACAATGTTAAGTGGAAAGTAATCATAATATTTCACG
TGATAAAGGTAACTTTGGTGGTGCCCGCTTTGTCACCATGCTGATTTTGA
TCAGAACAGCACATTGATTATAATGGGATAATCTTAATAGCAAAATAAAA
gcactaaaatttaaaaataaaaattaattattgcAAAGAAAATTGTTATA
AGCTTGAGTTTGAGCAACTTTGGTTATTTTCGAGTTAACTACTGG Run BLAST on NCBI transcript from alignment at sc0000662:100244..102734+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028076 ID=TCONS_00028076|Name=TCONS_00028076|organism=Clytia hemisphaerica|type=transcript|length=2491bp|location=Sequence derived from alignment at sc0000662:100244..102734+ (Clytia hemisphaerica)
AAaggtaataaaaaattaaaattctgtaaaataataaaacttgaagcttg
aaataaaaagtatattCACCAAGCCAAATAGGTTTTCAACTTCaataaaa
ttggtcaaaatgaTGTACTTTAACAATATTAAAGCCTTCACAGTAATTTG
GGGGCTCCAAATGTATTGTTGCTACGGACAACTGGctagtttgaaaaata
taaacatgACAGGTTACAGTAAGGTCTCAATACCTTATTTAAAAAACCAC
AATAAAACTTTGGACGTTCTAACCTCGATTACAGTTTTGAACATTGGTAA
TTTGAATACGGAAGAAATGACATTTGAagttgaaatatattttgatatga
AGTGGATGGACCCAAGATTGGCTTTCAAAGAATACCTAAATGCTTCGTAT
GTCCTTGTCCCAGGTTTGTTGATACTGTTCAACCTTTTTTTGCCCTAATA
TACAAAATTCTTTTGGTTGGTGCAGCACTTTAAACTAGCTGTTGAACGTT
TTCGTTTCTTTTAAGCAGTATATCATTTCGCTACACCtaaaactttcttt
aaaaaggCTGAgggctgaaattttcagaaatccTTTCATATAAGATTTTT
ATGATTGAATCCTGGATGATGAGAGCGTTTTCagttaagaaaaaacaaat
ttgaagtATTGAGAGTGAGAATAAAGCTGGTCTTCCAGCAGCTTCAAAGT
TAGCCTATACACAGTCATTTGGAAGGACAGTATCaacatgaaaggcaaga
atgaATGATTGTCTTGTTGATAAAGGGATCCTAGAATACCAGTGGGTTCT
GAAACTCGACAAACTAGCTTTTTTTAAAGAGCAACAAAAAATTATTACTA
CTAGGCACGTGCGTTTGCCAATGTGAGGCTATCATAGTTGAAGATTTGAA
GTTACAGAGAAAGGGTCACGTCAGTGGTAATAACGATAATAGATAATGAA
ACATTCAAATCATAAAGCACTATTTTTGTTTGGTTACAGGGGAGACTGCA
TATCAGCACATATGGGTTCCCGACCTATTCATTCGCAATATGAAATTTTC
TGAAAGCAGCACATTTCTGACTGACCTATCTGGAGTCATTATCTATCCAG
ATGGCTTTGTTACTTTATCAAGTCGAATGAGAGTGGTGGCGCATTGTGAA
ATGGATCTACTGATGTTTCCACTAGATTCCCAGAGCTGTAATTTGATGAT
TGTTTCCTTCAATTATGATACAACGGTATTGAGGTCACTATGGGGTGAAA
ACCCGGTAGCAGTTGATACAATGAGAGATGGTAGAAAGTCACAAATTGAT
ACTTGGATGGGATTGAAGCTTGTGGAGACATTGACAACAGAAGGAAGTTA
TGTCTACCAAAACAGTGGTCTCAAATTCCAATACTTGATTGCAACTTTTG
TTTTGGAAAGACAAACCCAGTACTACATCCTCAAAGGCTTTATTCCAAGC
TCATTACTGGTCTGTCTGACGTGGGCAAGCTTTTGGCTACCAACAACAAG
CTATCCAGCTAGAGTGGCACTTATCTTGACCTCATTCTTGGCGTCTATTG
TGCTCTACCAAGGCTCATCCTTACATATCAATCAGATGACAGTCATGCAA
GTGTTTTTATTGGGAAATATTGCTTTGATTGGATTAACCCTACTTGAATA
CTTGCTAGCAGTAAAAAAAGAACACCAGATTGTTAAGGTAAGAAATAAAG
CTAAAATCAACATAATTCAAAAGAATCtatctgacagggtctattATTTC
CAGTTgtacccaatgaagtataagcccgaagggttagaagcaaatcttta
acctttctcaggcgaGAAAAAGTCAAGCCTTCAAAAGATGCgtcgtattt
ttgatgacggattgaatttagcgatttctttgttttcgagtggttttttt
ttaatctagcgGACAATTTTACTCTTAATCAGAAATTTATATAAAAACCA
CAcgggccgctcaaggccgcgcaactttggtaaaatttagtggcttcaaa
tcctaccaaggagattcgattctaacCCTTGGGGTTTATACTTCGTTGGT
TGTACCATCCTCATCAGATCACTGTATTATCTCATAACTCGTATTTTATT
CTCTTAGATGAAATCAATCGTGAATCAAACGAAAGGTGCGAAAGTAAAAG
GAGTTTTAGCAcacaacaaaaagaaaatggtCAACCCAGTAGATCAGAAA
GCGCGGTACATCATCCCTCTTATCTACATGGTGTTTATCGTGACTTTTGT
AATTTCGGTGACAATGTTAAGTGGAAAGTAATCATAATATTTCACGTGAT
AAAGGTAACTTTGGTGGTGCCCGCTTTGTCACCATGCTGATTTTGATCAG
AACAGCACATTGATTATAATGGGATAATCTTAATAGCAAAATAAAAgcac
taaaatttaaaaataaaaattaattattgcAAAGAAAATTGTTATAAGCT
TGAGTTTGAGCAACTTTGGTTATTTTCGAGTTAACTACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028076-exon-sc0000662-1491911889:100244..100656 | TCONS_00028076-exon-sc0000662-1491911889:100244..100656 | Clytia hemisphaerica | exon |
| TCONS_00028076-exon-sc0000662-1510915933:100244..100656 | TCONS_00028076-exon-sc0000662-1510915933:100244..100656 | Clytia hemisphaerica | exon |
| TCONS_00028076-exon-sc0000662-1575043694:100244..100656 | TCONS_00028076-exon-sc0000662-1575043694:100244..100656 | Clytia hemisphaerica | exon |
| TCONS_00028076-exon-sc0000662-1491911889:101233..101930 | TCONS_00028076-exon-sc0000662-1491911889:101233..101930 | Clytia hemisphaerica | exon |
| TCONS_00028076-exon-sc0000662-1510915933:101233..101930 | TCONS_00028076-exon-sc0000662-1510915933:101233..101930 | Clytia hemisphaerica | exon |
| TCONS_00028076-exon-sc0000662-1575043694:101233..101930 | TCONS_00028076-exon-sc0000662-1575043694:101233..101930 | Clytia hemisphaerica | exon |
| TCONS_00028076-exon-sc0000662-1491911889:102351..102734 | TCONS_00028076-exon-sc0000662-1491911889:102351..102734 | Clytia hemisphaerica | exon |
| TCONS_00028076-exon-sc0000662-1510915933:102351..102734 | TCONS_00028076-exon-sc0000662-1510915933:102351..102734 | Clytia hemisphaerica | exon |
| TCONS_00028076-exon-sc0000662-1575043694:102351..102734 | TCONS_00028076-exon-sc0000662-1575043694:102351..102734 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000662 | supercontig | sc0000662:100244..102734 + |
Blast
BLAST of TCONS_00028076 vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.991e-32 Identity = 97/309 (31.39%), Postives = 148/309 (47.90%), Query Frame = 2
Query: 209 TGYSKVSIPYLKNHNKTLDVLTSITVLNIGNLNTEEMTFEVEIYFDMKWMDPRLAFKEYLNASYVLVPGETAYQHIWVPDLFIRNMKFSESSTFLTDLSGVIIYPDGFVTLSSRMRVVAHCEMDLLMFPLDSQSCNLMIVSFNYDTTVLRSLW-GENPVAVDTMRDGRKSQIDTWMGLKLVETLTTEGSYV-----YQNSGLKFQYLIATFVLERQTQYYILKGFIPSSLLVCLTWASFWLPTTSYPARVALILTSFLASIVLYQGSSLHINQMT---VMQVFLLGNIALIGLTLLEYLLA--VKKEHQ 1102
+GY P K ++V +I + + G++ M + V I+ KW DPRLA+ EY + S L P + IW PDLF N K + TD + I+ +G V S R+ + C MDL FP+D Q+C + + SF Y L W E PV V GL L + L E + + N+G KF + F LERQ YY+++ +IPS L+V L+W SFW+ + PARVAL +T+ L GS + +++ + +++ + + LLEY V ++H+
Sbjct: 55 SGYDARIRPNFKG--PPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDP--SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAE-------------GLTLPQFLLKEEKDLRYCTKHYNTG-KFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHK 345
The following BLAST results are available for this feature:
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