TCONS_00028130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028130
Unique NameTCONS_00028130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028130 ID=TCONS_00028130|Name=TCONS_00028130|organism=Clytia hemisphaerica|type=transcript|length=156bp
CAACGTGGAAAAGGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTT
CTTGGATGGATTTGACAGACGTGATGAATGGTATGCAAAGCAAATTTTGG
ATGACCTGAAGTTAAGAACTTAAAGTTTCCATCGATTATGCTGACTGCAT
GGTTCA
Run BLAST on NCBI

transcript from alignment at sc0000665:15223..16623+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028130 ID=TCONS_00028130|Name=TCONS_00028130|organism=Clytia hemisphaerica|type=transcript|length=1401bp|location=Sequence derived from alignment at sc0000665:15223..16623+ (Clytia hemisphaerica)
CAACGTGGAAAAGGAAACAGTTGGTCAAGGCTCTACACTTAAGCAAACTT
CTTGAATGGGTAAGACCTTCATATTGGAAGATATTTTATTGAACTTTCAT
TAACGTTAATTGCTTTTTCTGAACAAAACTAGGCTACCtttgtttcgagc
gtaaaactcttCCTCTTTGGGATATAGTGAGTTTCAAACCTATGCATTAA
GCCAATCatctgtgttttaaacattcttttatttgaccCAATGCTGAAGT
TAAGTCTTAAATGAAATCTATAtaaatgacaattttcaggATTTGGTTTT
TGTGGCTTGATGACATTCAAAGTGGAAAAGGAAACAGTTGGTCAAGGCTC
TACACTTAAGAAAACTTCTTGGATGGGTAAGACTTCATTCatcattattt
tttaataaaactaggctacgtcatattcCCCTTTGTTTCGAACGTAAACT
CCTACATACTCTTCAAAACTAAGGTCTAAAAAACTAGGAGCTGtgtattg
tgtagactagaacATAACCAGGCTTAAGAAACAACATCGAACAAACTGGA
TAAACTTAACACCTCGTAAAATGTTCTCATTCCATGCAAAAAGTAATAGT
AGTTGCaaaactttttaatcaaacccatATTACTTACTCTTAGATTTGAC
AGACGTGATGAATGGTATGCAAAGCAAATTTTGGATGACCTGAAGTTAAG
AACTTAAAGTAAGAACTTATTGTTATCTATTTTCAGccgaaaatttgacc
aaatctATCATATTGTTGTCAGTCGCACCTTGGAAACAGAAGCTTTCATC
TTCTCAgttggaaaaagttccaccggggctttgaTGTAGCTGCGTATGTT
TCAAATTCGATACATGGTAATAAAAAATGCCTATCAGATTTTGCATAAGG
TTTTTCATTCCTGTTGATTCATATAGTTTGACATATTTTNCTTTTCATTC
CTGTTGATTCATAtaatttgacatatttttataagaaactcaaTTTTAGC
TTCCGTCCTGCTTTTGCTTAGCTTTCTAGCTCTATGTTTGAAACATTTGG
TGCGATCACCCCTGACATTATACCATATTAATGCTTATTTGGTTAGGAGC
TGtcgtttgccatggttagatctaaaaaaaattctattacGAGATAATAA
AGGCTCAAGCCTAAGCAGTctagttgcttataagaaaagaaGTGTGCTCT
TTCATGTCTTTCCCCCTTTTTAATAGAAGAGAAAACACAATGTATCGGAC
AGTTTTGGACACATTTAGCAATCAAACTCGTCTACCATTTTGTCTGTAAT
GataccaaaaataattttagtgtCTTTATTCAGCTTTACTAAAACGGTAT
AATTGTTGTCTTATACTAGGTTTCCATCGATTATGCTGACTGCATGGTTC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015915XLOC_015915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028130-exon-sc0000665-1491911889:15223..15251TCONS_00028130-exon-sc0000665-1491911889:15223..15251Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1510915933:15223..15251TCONS_00028130-exon-sc0000665-1510915933:15223..15251Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1575043694:15223..15251TCONS_00028130-exon-sc0000665-1575043694:15223..15251Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1491911889:15569..15598TCONS_00028130-exon-sc0000665-1491911889:15569..15598Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1510915933:15569..15598TCONS_00028130-exon-sc0000665-1510915933:15569..15598Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1575043694:15569..15598TCONS_00028130-exon-sc0000665-1575043694:15569..15598Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1491911889:15866..15930TCONS_00028130-exon-sc0000665-1491911889:15866..15930Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1510915933:15866..15930TCONS_00028130-exon-sc0000665-1510915933:15866..15930Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1575043694:15866..15930TCONS_00028130-exon-sc0000665-1575043694:15866..15930Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1491911889:16592..16623TCONS_00028130-exon-sc0000665-1491911889:16592..16623Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1510915933:16592..16623TCONS_00028130-exon-sc0000665-1510915933:16592..16623Clytia hemisphaericaexon
TCONS_00028130-exon-sc0000665-1575043694:16592..16623TCONS_00028130-exon-sc0000665-1575043694:16592..16623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:15223..16623 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top