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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028133 ID=TCONS_00028133|Name=TCONS_00028133|organism=Clytia hemisphaerica|type=transcript|length=641bp
GTGTGAGCCTCTGCTGACTGGAAGATCTCATCATTGAATTGTTATCCAAT
TTTATAGTTTGAGACTCAAACGTGGATAGAGATTCACCAGACGGTGCCAA
ACAATATGTTTCACTCAAGACAACCGATGTTACTCCAATCAAATACCTTG
TCAATTTCTATGACAACCAGACCGAAAACTTCTTCCCACCTGACAAGCTT
GGTATAATTGGTTAACCCCATTAAGGGAGTTAGTCTGGTCTAGGGGCGTC
TGATTACGCCTACTTTAATTATGATTTTTATTATTGAGGCAGAGTTGATG
ACGTCAAAGATTATCAAATCCGAGTGCAATTGAATAAGATCAGTGGGAAA
ATTGAGCACAACATTAACAATCCGTCAGCGCTCTTTCTTAAACTGACACC
TCAGTTCCATCAAGTGAAAAAGTATATCAGAGTCATCGGGTCTAAAGGAA
GCACAATCTTGCTTTGAAGATATGGTACAATTATTTCAAGTACCCATAAT
TATGTCATGGTTGAAGGTTGGTCTGTACATCATCATAGCATAACCTGACA
ATGACGATCAGAAAGTGTATTTGGCTGTCATAAGAGATGTCACCAAGAAA
GAAGGACACAAGTCAAACAGTTATCTTGTGGATTTTACAGA Run BLAST on NCBI transcript from alignment at sc0000665:123157..128284+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028133 ID=TCONS_00028133|Name=TCONS_00028133|organism=Clytia hemisphaerica|type=transcript|length=5128bp|location=Sequence derived from alignment at sc0000665:123157..128284+ (Clytia hemisphaerica)
GTGTGAGCCTCTGCTGACTGGAAGATCTCATCATTGAATTGTTATCCAAT
TTTATAGTAGGTACTGTgtgaaacaaaatttaattttttttgtttgtaat
tgGCCATTTTTACCCTAAAAATACTGAAATAATATGACCTCTTGATGTTG
ACGTAAAATGCATTCGAAAACTCattaaagggacccctcgcttaaaaatg
ataacaagacactcacttcatattcatatgaaaagcaacttcccaaagta
ttagcacgcaaaactctttcttcgattcataattataaattataaatttt
gatgttcactcaACTTTCAGAAGTTTCAAATGGCTTCTGAAGGCCTTCGA
ATTCTCTCGCGCTCTTGTCGCACCAAGTTGTCGATACAAATGCACCGGAA
AATTACAGTACGAGGTGTAGAGGCCGGCTCTGGTTTGAACAGTCTAGAAT
CTGCACTCTTCTCCTAAGAAAAACCCTTTGCTTGGAGTCGAGTTGCAGGT
TTATGGAGAATTGGTATCGGCTTCAGAACTCCCAATAAGCCCCGGTTAtg
ttggtttcagtcagacggagacgccatactgttttcagaggaatttttcg
atatctctgcaggaactagcagtaagttttatgttctttgaatatgctgt
taggggtttttggaccaatatagtttgatttcctaaagatcacaaacaag
cgaggggtccctttaagGAACTCttaaccagacggtgtcaatcgaacaac
ttcgaacggaaatcgcaatcgaaccaatcgaacgcaatagaccttttttc
aaagaggacgtcctgttgaataattatgtactccagccataaaaacaatg
atagagccatgcatgaTTACTATATcgtgcatattgtaataattatgcat
ggttttatcattgtttttctgctggacNActatatcatgcatattgtaat
aattatgcatggttttatcattgtttttctgctggactacataattattc
aacagggtggcctctttcaaaaaaggtctatcgaacACGATTgaatgatt
gcgattcgattgccgaacgcaatcgaatctcaattgaacggCCAATTCtt
aggtaatattcgattgtgttcgattgcgttcaagtaacgttcgattggtt
cgattgatagtcaACCTATGTttaattggttcgattgattgtaaaTTACC
TTCGATTGATCTTCGATTATGATtattttgataagtttgattgcgattta
ATTAAATTTGATCACTCCTTTAAAGCTCTTTTTAGCGTGGACGGCCGAGT
GCGTAAGTAACTGTACTAGAATGAATAAAATAGAATACAATGGAATCAAT
CGAACgcttcggcgttcgattcgtttgattgacaccgtctggtctTAAGG
TCCTTNCCTCTTGATGTTGACGTAAAATGCATTGAAAATTCTTTAAGGTT
AAGGAACTCTTAAAAGCCAACTTCCAGCATCAAAATATGACAAAGGAAAG
CTTTTATTTAATttgtgtcattgttttgatgcaGGAGCCTTACATTTCTA
TTTCAATGTGATTGAGTCAACAtggtatgaaccccccccccagagattag
gggggacctaatttttttttaccatattctgGCTGGGGGctggcaaaatt
taattttttagccagacgatctcaatcgaacagaatcgacgatcgaacca
gtcgaaccaaattgaacgcaatcgaccgattgaaattcgattgtcgaacg
caatcgaatctcaatcgaacgtcaaaattctgggtaatattcgatcatgg
ttcgattgttgtttgacTGGTTTGATCAtcgattccgtttgattgagatc
gtctggctagACCCTGTCAGcgcggtgtttcttaattttttgtttcataa
atgtccggcgtccaaaattccctgtatgcaacaccggactaacaccggac
ttattgcgtccagtgtagcgaaaggatactttttgccaccagaCAAATAC
ACCAGACAGTCGGGTgtgtcggcagggtcctgtctggctttattcttgca
gcttcccaacatccaagctctcaaacatcacaagccgaatgaaattactt
tcgatttcccgtagaaattatgcgataaACAATTCGGGGGTCAATGAATT
gacaatcgaacgcaatcaaacatcaattgaacacaatcgaatatcaatcg
aatctgaaaattgcagtaatattcaattgagattcgattgcattcgacaa
tcgaatttcaatcggtcgattgcgtttgatttggttcgactggttcgatc
gtcgattccgttcgattgagatcgtctagTTTTAGGGGGTACCTATATTG
CTGGGGGGACCTACAACGGCATGTGAAAGATCTGGGGGCTGGCTTTGTTT
AAAATTGGGAGTAATCTTTTTCTGCTTTCAATCCACAGATTCATTGTTTT
AGTCCAACTTTTATATCATTCACATTATTGAAGGTCAAGTGTCTTAAGTC
AAGGAACTTGGTTTTCTTAAATGTACATCATTCCATAtagtttgtatttt
taaagcttCACACAGTTTTTGTAGTTTACAtttattgtttatatttgttt
cttAGTTCATGAAAAAGTCTTTGTTTCGTGTAAAATAGCATctttgtttc
atctttattttatctgTTGATCCTTCTTACCTTAGGTTATTCTACTGAGG
GATGAGAGGTTTTATTTCAGGGGGTACCAAatttttagggggggggctaa
atttTCTGGGGGAACTTAGAACCCCTCTGCATACCATGTTGAGTTCTCAA
CAGTagtaacttgcatcaatggaggctaacatgcatagccctcaaatgag
tgacctgtctggtccttaaaatcaaaacaaaaatagtagagtagagctgc
gagcgaagcTGCGTATAGTTcatatgttttgaaattttgctgctttgatt
ggtcagtcatttgaggactatggcggcaatcaaaaatatgttccattcgg
gtcctaaaacatcttcaaatccagtcagtcggtcggttggtagtaaattt
tgtcggatttttaagatctagtaaatcTCAATGAATCAAGTCTgcaatca
acagaatcttatgGCGCCATCTTTAATTTGTCAAACTAAATGTGCGCACA
CATGTGTTAACCTTAAAGCGGCCCTTATTTCGGGCCCCCAgggtattggc
cctaccgcgttgctgaattttgacatgaaaatttcaataagggtgcataa
aaaacttgaacgggactcaatgtgggttaagtaaacaaaagataATGATT
CAAAGACATGCTCCGTTTGCCCGTGCCTGCCATTATGGGAAAGATCCGAA
CCTGCAAACAGCGCCAAAAAACCCGACGATTTTGTGAAATGCTCTGTAAA
ACAATGATGGTTCATAAGttaagtcatatttttcaaNGATTTTGTGAAAT
GCTCTGTAAAACAATGATGGTTCATTAGttaagtcatatttttcaacttt
tatttcAAGGTTTGAGACTCAAACGTGGATAGAGATTCACCAGACGGTGC
CAAACAATATGTTTCACTCAAGACAACCGATGTTACTCCAATCAAATACC
TTGTCAATTTCTATGACAACCAGACCGAAAACTTCTTCCCACCTGACAAG
CTTGGTATAATTGGTTAACCCCATTAAGGGAGTTAGTCTGGTCTAGGGGC
GTCTGATTACGCCTACTTTAATTATGATTTTTATTATTGAGGCAGAGTTG
ATGACGTCAAAGATTATCAAATCCGAGTGCAATTGAATAAGATCAGTGGG
AAAATTGAGCACAACATTAACAATCCGTCAGCGCTCTTTCTTAAACTGAC
ACCTCAGTTCCATCAAGTGAAAAAGTATATCAGAGTCATCGGGTCTAAAG
GAAGCACAATCTTGCTTTGAAGATATGGTACAATTATTTCAAGTACCCAT
AATTATGTCATGGTTGAAGGTTTGTGGTTTTTTAATAGACACAAAATATA
GCGAGGGGTTGAAATCCTGAATTATTAAGGGTCGTGGCTGAATGATTCTG
CAATTTTGTCCCATAATTGTTATTGGTGAATAGAGAATACCAACTATCAA
TCATTTTCATTATCACTTTGTCAGCTTGTGAGGCGACTGGTAAAGATTCT
TTTCATCCTAAAGGGTTGATAATTGTataaaaaacattgttctcaTCTTA
TTATGAAAGGTTGGTCTGTACATCATCATAGCATAACCTGACAATGACGA
TCAGAAAGTGTATTTGGCTGTCATAAGAGATGTCACCAAGAAAGAAGGTA
TAAAATTTGGTTCTAATATTTTGTACTCAGGATTCAACTTAGCTCACTTA
AAATGTACTTTACTAGAATCTGATAATATCTGcgtgtatgtctgtatgtc
atCTCAAAATTTTGGGACATGCTGGAGAATGGTCTGATTTGGCTGANCTG
ATAATATCTGcgtgtatgtctgtatgtcatCTCAAAATTTTGGGACATGC
TGAAGAATGGTCtgatttggctggaattttacacacttgttccttgttCC
TAtctgtgtttttatttttcatattttttttactttgatttttaGGGGCA
TGTTCAAAAGTTTCTTGCCAAAACTAGGCGTAAATTTTTAGGGCAGGcta
gagacttcaaaaatggtccaatatgGCTGAAGTTCTgttctattttcatt
tttttttaattttgatttttaggggtgTGTCAAAACGAGGCAAAAAACCT
AGggacaggctggagacttcagaAAATGATCCAATATATCAGAAATTGTA
TGTTGGTGTTTACAATTAGGTCTACGAATACTTTAAAAGATATCAAAGTT
GAGCAACTACGGTTAGCACGTTTAACATTTTTATATGCTCAGAATTCAAC
TCAGCTCACTTTActtaattttgttaaaaaaatacatGTGATTAGTTGGT
TTATGTAAAAGCTTATCTGCTTTTGGGCTTTTTAATCTAATTTAAATGGA
ATGGGTGTTTTCAGTGTAGCCGACAGAGTGACCAATCTTTCAAATTGTAT
ACTGTAAAATTGAAATACGagcttctttgtttttattacagGACACAAGT
CAAACAGTTATCTTGTGGATTTTACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028133-exon-sc0000665-1491911889:123157..123212 | TCONS_00028133-exon-sc0000665-1491911889:123157..123212 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1510915933:123157..123212 | TCONS_00028133-exon-sc0000665-1510915933:123157..123212 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1575043694:123157..123212 | TCONS_00028133-exon-sc0000665-1575043694:123157..123212 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1491911889:126666..127125 | TCONS_00028133-exon-sc0000665-1491911889:126666..127125 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1510915933:126666..127125 | TCONS_00028133-exon-sc0000665-1510915933:126666..127125 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1575043694:126666..127125 | TCONS_00028133-exon-sc0000665-1575043694:126666..127125 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1491911889:127366..127453 | TCONS_00028133-exon-sc0000665-1491911889:127366..127453 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1510915933:127366..127453 | TCONS_00028133-exon-sc0000665-1510915933:127366..127453 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1575043694:127366..127453 | TCONS_00028133-exon-sc0000665-1575043694:127366..127453 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1491911889:128248..128284 | TCONS_00028133-exon-sc0000665-1491911889:128248..128284 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1510915933:128248..128284 | TCONS_00028133-exon-sc0000665-1510915933:128248..128284 | Clytia hemisphaerica | exon |
| TCONS_00028133-exon-sc0000665-1575043694:128248..128284 | TCONS_00028133-exon-sc0000665-1575043694:128248..128284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000665 | supercontig | sc0000665:123157..128284 + |
Blast
The following BLAST results are available for this feature:
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