TCONS_00028142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028142
Unique NameTCONS_00028142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028142 ID=TCONS_00028142|Name=TCONS_00028142|organism=Clytia hemisphaerica|type=transcript|length=358bp
GGCCACCTTTTTCAATGGATGGAAAATGCGTTCTTCGTCGTCTGCATTGA
TCGATGGTAGTGATATGATGCGATACCTCATTGGACCGTGATCCGTTAAA
GAATGCAGGAAGCCGACCAGGGATGTCTTCGTATATATTGTAGATGTGCC
CCTTTTTATCGCATGCAATGGCTCGACTTCCAGAACTTCATAACGCTCAA
GAGAACACTCACGTAATGTCGCGTTTGGTTTGAAATGGAGCAGTGCTGGC
AAGCGATGGATGCAGGCTTCAAATCGTCCATCAAAAACTTAATACCACGC
AGGCACTTAttccgccacagcctaattttgggcttacgccaattagggcc
gtaaataa
Run BLAST on NCBI

transcript from alignment at sc0000665:147337..148160-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028142 ID=TCONS_00028142|Name=TCONS_00028142|organism=Clytia hemisphaerica|type=transcript|length=824bp|location=Sequence derived from alignment at sc0000665:147337..148160- (Clytia hemisphaerica)
GGCCACCTTTTTCAATGGATGGAAAATGCGTTCTTCGTCGTCTGCATTGA
TCGATGGTAGTGATATGATGCGATACCTCATTGGACCGTGATCCGTTAAA
GAATGCAGGTACTGACCATGCGTTTTTCTTGTAGTCAACTTTTTGGGTTG
TGGCATTAGTTCTTCCATTGCAACCAAATGAAGAAATGACTGGTTGAGAT
ATCGGAATACCTTAAAAAAATTCAGAATCTAACACAGCTTTTTTAATTTA
TTTTGCAGTCAGTACTTAGGACTTCAATATGGCATGAGGATTATGGGTGG
TTAGTTTGGTAGTTACGCTCTCAGCATCGGCAAAGATAGCTTAATTCTTT
TTAAATGTTATATACCTTAGCGTTGATTTGGTGGACTTCATTTAAGTAAA
TAATCTCCTGTATCTCGATTATCTGGAGTAACAAATTGTAAAAATCAGGG
TCGATTTTGTTTCTTAACAACACGCAAACATCAATCAAGCTTCTTCTGTA
GTTTGCTCCAGTTATGGCTTCCTTCTTGAATGACACCTTGACTGCCCTTG
ACATCTTTTTCTTTTCATCTTCAGGAAGCCGACCAGGGATGTCTTCGTAT
ATATTGTAGATGTGCCCCTTTTTATCGCATGCAATGGCTCGACTTCCAGA
ACTTCATAACGCTCAAGAGAACACTCACGTAATGTCGCGTTTGGTTTGAA
ATGGAGCAGTGCTGGCAAGCGATGGATGCAGGCTTCAAATCGTCCATCAA
AAACTTAATACCACGCAGGCACTTATTCCGCCACAGCCTAATTTTGGGCT
TACGCCAATTAGGGCCGTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015924XLOC_015924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028142-exon-sc0000665-1575043694:148053..148160TCONS_00028142-exon-sc0000665-1575043694:148053..148160Clytia hemisphaericaexon
TCONS_00028142-exon-sc0000665-1575043694:147337..147586TCONS_00028142-exon-sc0000665-1575043694:147337..147586Clytia hemisphaericaexon
TCONS_00028142-exon-sc0000665-1510915933:148053..148160TCONS_00028142-exon-sc0000665-1510915933:148053..148160Clytia hemisphaericaexon
TCONS_00028142-exon-sc0000665-1510915933:147337..147586TCONS_00028142-exon-sc0000665-1510915933:147337..147586Clytia hemisphaericaexon
TCONS_00028142-exon-sc0000665-1491911889:148053..148160TCONS_00028142-exon-sc0000665-1491911889:148053..148160Clytia hemisphaericaexon
TCONS_00028142-exon-sc0000665-1491911889:147337..147586TCONS_00028142-exon-sc0000665-1491911889:147337..147586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:147337..148160 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.267607	0.237192	0.5535	0	0	0	0	0.40677	0.757789	0.803424	0	0.161602	0.165292	0	0.447645	1.11774	0.183208	0.266382	0	1.66396	1.00345	0.995065	1.04764	0	0	2.33911	2.21546	0.566218	0.593432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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