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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028166 ID=TCONS_00028166|Name=TCONS_00028166|organism=Clytia hemisphaerica|type=transcript|length=1754bp
gcaatattttcaaagaagagATCAAATGTCGAGTTtgctcaaaaaaaatt
ggagGGGATCGGAAAAAGATGGTAGACACAGCTACGATCGAATTTGCTGT
AATCGGTTGTGTAACACATCACATGAGCATCTTTTTTACACATTTTCAAT
CCGATTATGAACTGTCTCTATGAATTCACGAGTGGGTAAGGCTTGGTTTC
AAGGATAGTGATTTTACCATGCAGAAACTGTAGCTATTCAATGAAGAAAG
CAAAATCTAATCCTTACCGCAAAAAAGTGACTCAAAAGAAACCAAAGATT
CACAAGGACCATCCAGTAATTCAATATTTGAATGAGGTGAAAATTCAGGA
GGCAAATTTGAAAAGGCCATCCCAAAAGTCAATTTTGGGAGTTGAGACAA
ACAAGCTCTTGTACTCATTAGAAACAAATAAAGCTCAAGTGTTGGGATAT
GATGTAACAGAATTTAAGACAAGAGTGCAATTGTTTCTTGATTTGAAAAC
AAGCTTGTCTGATGCAATTTCATTATCTCTTGCGATTCCATCAATTTTTC
ATATCAATGATACAAACCTGAGAAGTATTGCAAGGATCTTACGGAGATAT
AATATATCTGTTGAAAAATTGGTATATAAATACCCTTACGTTTGTGCGAT
GAATAGAAATCATGTCGAAGAtaatctgaaaatattaagTGAAATTTTCC
CCAAAGATGAGCTGGATGACTTTATTTTTAATAATCCCCAAATGATTGTC
TTCAAACTTGATCGAACTTGTGTTGAAAAGCTTACACAGCATAGTTTGGC
TTCTGACGAAAATACTTTGAAATTAAACAATATAAAAGTGACTTTAAATT
CACCAGCTGTAAATAATGTTCAACTTGACACTTTGGTTCCGGCAGGCAAA
ACTTTTGATCAATTGATTGACGAGGAGATGATAGAATTACTGACATCTTA
TGATATTGATTTACAGTATATGTATAAGCTTTGTCCAGAGTTCTTGGTCA
CTCCAATCAACACGATTGAAGAATGCTTGGAGTATATCACAGGCTCACCT
TTTTATTTCGAAGTGGATGATGTGCAGCAACTTTTGAAAACCTATCCTGA
TATCGTTTTGATGTTTGATAATGAAGAAACACTCAAGATGGTGTCTTATT
TGGAGACCGTGTTTACACAAAAAGGACATCTGTATCGAATTCTAAATGAA
GATCCAGAAATGCTGAGAGACTCAGATACGTTTTTTCGTCGaattgagat
tttcaaaatatttaaatttaagAAGAGTGATATTGCATTGATTCTTGCAC
AGCCAGGTGGGACAAGTTTTTTCACTGATTGTTTGGAGTTTACAGATGAC
GGAATCAATGAGAGCTTGGAGTTTTTCTTCAGCAAAACAGATATTGTTCC
CTCACAAATTGTATTTTCAGTTCAGGCCTGCTTATCACCAAAGTTTACCA
AGATTGCAAGAGAGAGGGTTTCTTATATGAGGAAGATCCAAAAGATGCAT
ATACTGGCTAAGAAACGAAAGCGCAAGCGCTCACAAATTACCCTGAAAAG
TGTTATTAAATGTGAACTGGAACATTTCATTACTTCAATATGTGGGACTA
CTCAAAGTGATTATGATGTGTTTTTAAAGGATTATACACAAACGAAATAa
cctgaaaagttttttttctgattaataaaatttcattgaataaTTGAATC
TACTGTTAAAAAACTTATGCTAAGATTTTACTATTTCACTTTAAATCAAC
TGAG Run BLAST on NCBI transcript from alignment at sc0000667:103291..112054+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028166 ID=TCONS_00028166|Name=TCONS_00028166|organism=Clytia hemisphaerica|type=transcript|length=8764bp|location=Sequence derived from alignment at sc0000667:103291..112054+ (Clytia hemisphaerica)
gcaatattttcaaagaagagATCAAATGTCGAGTTtgctcaaaaaaaatt
ggagGGGATCGGAAAAAGATGGTAGACACAGCTACGATCGAATTTGCTGT
AATCGGTTGTGTAACACATCACATGAGCATCTTTTTTACACATTTTCAAT
CCGATTATGAACTGTCTCTATGAATTCACGAGTGGGTAAGGTAAGTAATT
TACGCTTTTTAGTTTAATTCAAAAGAGCCTATATTTGGGATTTCAACcct
tctaattttttttctatgtatgctaaaaagggccattccagaaaattttt
gttacccctcCCTGCtctagcaactccagaagatttttccaattttaatt
tttttttcaaaacctatcctatcttgtagagctttgaaaaagaaagaaaa
tgaggggtcataggcctccagcagtcagtacctttagccaaattaggaac
atttttcttacttttaccaatattcctaattaggaatcctattcctaatt
aggaagaaaataattcctaattaggaagaaatatttaaaagtttaatatA
TCTGAAACGAGCTACATTCANtttatataaaaatatttgtaaaatattta
gtatatttatcaaaataacggaagatatatcttttgttgaaaaaagaaga
cattgcattgttttatttttgtttttgaagaaaagtagcttggaaaaggt
tgaaatgagtcaaaaaaggtggtaggaccccttttcaaggggcctctgga
aatggaggaacaaaaacttatgtaaagaataagtttttctgaaagaagaa
accccaaatgaaaagaaaatccatttcggcagaaataaaaacttttgttt
gggacattcccatgcaaaagaagcaaaaaagtgaaaaaaactacatgaaa
ataaaagaactaaaattagcgaatgtgatttttgaattcctcaccctttt
tctgataaacaaagtttcagccttcaaatacattttcctccgtttccaga
aacatttgttcatcgatagttgcaaatttttttttccccgtcggcaaaca
attttcaaaatgttgcaaaacgtttggcattttaccaatttgctgtctag
cccgtgtccacagtgttatataccgctggaaagctaagatcatgggcttt
catttagtaaaaaccggaacgctttagcatacatagtaaaaaagttggaa
gggttcaaagttcaaggaaaaatgaaacatttggtttgacgtcaacgaaa
gttgcatgacttctggagtcgctatccCTGCCCTGTGCCtgtcggacgac
gtgcatttttaaaatttttctagccttggaaataatttttgataactAGC
CTTAATGTATAGGGGTTGctaagcgatccagactccaccaaGTGTATATA
TAATGTAGGACATTATaattcagttagggaaaccatcaaACAGGATCCTG
CCATTTTATAagccagacgtccgcgctcgataggatcgattaTCGGAACG
GCTCgttgacggatcgatatgtgatcgatggattacttaacgatccggat
aggagatcgatggaagattcagcctttaaaaagtcttgagtatcgatcct
tcgttgatccattatcgagctagtatttcaatcgagtatatcgattcgtc
atcgatcgttaaacgattcgtcatcgatcgttaaacgattcgtcatcaat
cgtgaatcgagtatgagtcgatagggtcgataagatcgataaaagatcga
tgatagatcgataaacaatcgataactaatcataagcttaaaaaattctt
gagtatcgatcctctatcgatctcctatccggatcgttaagtaatccatc
gatcacatatcgatccgtcatcaagccgttccgatgatcgatcctatcga
gcgcggacgtttggtataagccagcaaaaactaaatgagaCTTGCAAACT
TAaatttcttaccattttccatcgaaaacaacttaaaacattgctacttc
ccaaagccaaagagaccaaaacaaattatcttccaagattatggcgccct
tttggatctattgttaaggccatctaaaatggcgTAGAAAGAGTTGTGGA
AAGACAAAAGCGCCCGCTGCTTCAAGGGttgtaacgccaaaacgcccaat
atgatcttccaacagaaggcgagttagtcgccgcgcgagttacgtcatgc
actccaccacAGCGCACAACAAAGCGTGTTTCAATGAATATtattaatta
taagaacatcttatgTGCTTACGTTCATNNNtgaaaaagtttttccgacg
caaaaaaaaatttcagccaattaaaagcacagtgtgcttatacttactat
gtttgctacatcgtctaggctaaaaaaagtgcgataagacacgaacgcca
ctttttaatgagtgatgttattatttttttgattgcggccgcgtacagga
actggccaaatgttcctaactgtaaTTATTATTAAAAACCTACATAGTAA
TGTACAACATTATTTTGCGTGGTGAGAGTTAGGACTGTTCTGTCAccttt
caaactatttttctccatttaacagcaaaataaacatttaaaaccgaaga
accactgttTTTTAGATGCTTGCCGCGctgcaatttgatcaacttcaaaT
TCTAAGTCTGTGTTTCGACTTCTggtaatttttttgctgttcactTCCAG
CAttcaccattttaaaacggccttttccgcagtcctagctaccaaaccga
gaaaatttttgtggCTTTAATGCAAACCCTTCATggtcattttgacaaaa
tcatcagtttgaagatgtgatttatatagcaaattttcgcttgggataga
agttaaagaggtacgtgcacacaatgtagaaaaactgcttcgctcataaa
tttgCTTCgcaaaaatccatgtacttttgtaaaatgcatcggaaattcca
ctcttttttgccttttttaattcaattgccttggaaataaattcatacat
tttcttctctcgccttggaaatttcgaattttggtgaaaacttttgccct
cggaaatccttccgcccccctgttacagacgaATTCTAGAATGGCCCAAA
GCGTTccagtttttactaaaagaaagcctGTGATACAACACTGTGGAcac
atgctagacgacttattAAAGTGTGGAACGtttctgcaaaatttctttgc
cgTGGGAGAAGAATAGTTGCAACTATTGATGAATGAACAAGtgtttctgg
aaatggaggaaaacaTAGTTGAAGGCTGAatctttgtatgtttatcagaa
aaaaggTGGAGGAATTCAACGATCACTTTTGCTAATTTTAGTTAAGTTTT
cctcacttttttgcttctttagcatgggcaTCATGGGAATGTccctaaaa
aaagtttttatttcagaCGACGAACGGCCGGACattgtccgatgtccgac
cattatttcgagccctgaatgtcgcccaccatggtcatagggtcctccag
ggttcaggtacccccaaaaaatttaggtacccccaatcattttggtaccc
ccaaaatttttagaattctaaagtaaCCCCTTAACTTTGAGTTaccccct
ttttaattttttttattgttaaaaatacaaaaagggattttttgctcttt
tgtcattcctgggAAAATACTTCCATGGCGGCCAGCACTTCTTTTTCAAC
AAACTCAAGGGTGTCATCTTTGACTATAATTTTCCAGGGTTTCAAGAGAT
TTTTATATACCACAAACTTTCAAGGATTTCTAGGGTTTTTAGTTGATCTT
TGctagttttcaaagatttcaaggaAATCTGTCGACAAAAggagaaaggt
tgaattttaaatttttgtgtaaAGGAGGGCCCTTAGATTGgctgataatt
gataattttacaaCCACCCATTCTATCACCCAGACCTGCCAATCTCATTT
AATTCCAGTGGCACTTAACGGGTTAAAAGGTAAACCTCCTAAGAATGAGT
GTGGAATACCTTGAGTCTCAGGGGTTCCAAAagtatgttttctcattttt
aagtcACTGCATTGTTTGTATCCCACGCAATGGGAAAAATGTTGTATTTC
TGAAagttaaaatggctgaaaatggccACAAAATTTGGCATTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTGGCCACAAAATTTggcatttcaa
gggtttcaagggtatAAATCTTGCATTTCAAGGGTCCCCAAAATAATATT
GacttttcaagggtgtttcaagggtttcaaggagtTCAAGGGTgacttca
tacaaaaacaacagcccCCACCCACACTAATGAAAATGCAGGTACCCCCA
AATCTCTGGGGGGGTGGATCCTAtgatggttgggcgacgaagaaagcTTT
TGCACTCTAAACGTCCTAAATAGGCGATTTCTTGCATGTTATTAGCCTAA
AAATCCTAACTTGTTTATAATAAAATAACcttaatttgaaatgttttgga
GGAGTTTAATGTGAATGTTGATGTCAATtcttatcttttgataaaagcaa
tacttttatttttccatatAGTTGAAGAAACTAAATTTGAAATAAGGACT
TAAAAGTTTCATTGCAACCAAACTATACTTTCTATCACCACAAACCTTTT
TTGATGTATCAAATAATTTTATATATTAGCAATAAATCATAAAACCGAAA
ACGATAAGATTCACGGTAGTTTTTGGTAAACGAATAAGTGGAAAATAGGT
TAATCTAGCCAGTCTTGTCATTTCAAAGATCAAGACGTGTGGTAAATAAC
ACTCTTAAAATCTGAATTTTACTAATTAAGGTGTGTGATAAGGGGTGCTA
TCAACCACTTAAATTTCCTTAAATCTCCTCAGAGATTTTAAGCATGTGCT
ATCACGACTCAAATGATTCAGCCTGTCTAGCCTAACTGTTGTTAGCTTTC
AGGGGGTATTAAAAGCAAATGACAATCTTACATGCACCCttataaattgt
aaatttttaaattaaacttTTGTGAGCGTTACAAGAATAATTTGAGCAGG
GGGTTTAGGGACTCAAAATCATTAAGTCTGAAATGACCCTAAGATCAATT
GAACACctattttgatttaaagaaaaaaactaaaatgtaaTTGAAAAAGT
GATTAAAGACTAGGAAAAAAGCCTATTAGCCTGCCATAGCCTTTAGATTT
TAACtggacaaaatcaaaaagtattaGTTTGAAGGGAAATATCTCAACaa
ttaccaatttttttttcagctttaATTTGATTCTTTATACTGCAATCTTT
CTTGTAggtagacatgaaatttttaacACTCTTGAGCAAAAATTATTTAG
GCTTGGTTTCAAGGATAGTGATTTTACCATGCAGAAACTGTAGCTATTCA
ATGAAGAAAGCAAAATCTAATCCTTACCGCAAAAAAGTGACTCAAAAGAA
ACCAAAGATTCACAAGGACCATCCAGTAATTCAATATTTGAATGAGGTGA
AAATTCAGGAGGCAAATTTGAAAAGGCCATCCCAAAAGTCAATTTTGGGA
GTTGAGACAAACAAGCTCTTGTACTCATTAGAAACAAATAAAGCTCAAGT
GTTGGGATATGATGTAACAGAATTTAAGACAAGAGTGCAATTGTTTCTTG
ATTTGAAAACAAGCTTGTCTGATGCAATTTCATTATCTCTTGCGATTCCA
TCAATTTTTCATATCAATGATACAAACCTGAGAAGTATTGCAAGGATCTT
ACGGAGATATAATATATCTGTTGAAAAATTGGTATATAAATACCCTTACG
TTTGTGCGATGAATAGAAATCATGTCGAAGAtaatctgaaaatattaagT
GAAATTTTCCCCAAAGATGAGCTGGATGACTTTATTTTTAATAATCCCCA
AATGATTGTCTTCAAACTTGATCGAACTTGTGTTGAAAAGCTTACACAGC
ATAGTTTGGCTTCTGACGAAAATACTTTGAAATTAAACAATATAAAAGTG
ACTTTAAATTCACCAGCTGTAAATAATGTTCAACTTGACACTTTGGTTCC
GGCAGGCAAAACTTTTGATCAATTGATTGACGAGGAGATGATAGAATTAC
TGACATCTTATGATATTGATTTACAGTATATGTATAAGCTTTGTCCAGAG
TTCTTGGTCACTCCAATCAACACGATTGAAGAATGCTTGGAGTATATCAC
AGGCTCACCTTTTTATTTCGAAGTGGATGATGTGCAGCAACTTTTGAAAA
CCTATCCTGATATCGTTTTGATGTTTGATAATGAAGAAACACTCAAGATG
GTGTCTTATTTGGAGACCGTGTTTACACAAAAAGGACATCTGTATCGAAT
TCTAAATGAAGATCCAGAAATGCTGAGAGACTCAGATACGTTTTTTCGTC
GaattgagattttcaaaatatttaaatttaagAAGAGTGATATTGCATTG
ATTCTTGCACAGCCAGGTGGGACAAGTTTTTTCACTGATTGTTTGGAGTT
TACAGATGACGGAATCAATGAGAGCTTGGAGTTTTTCTTCAGCAAAACAG
ATATTGTTCCCTCACAAATTGTATTTTCAGTTCAGGCCTGCTTATCACCA
AAGTTTACCAAGATTGCAAGAGAGAGGGTTTCTTATATGAGGAAGATCCA
AAAGATGCATATACTGGCTAAGAAACGAAAGCGCAAGCGCTCACAAATTA
CCCTGAAAAGTGTTATTAAATGTGAACTGGAACATTTCATTACTTCAATA
TGTGGGACTACTCAAAGTGATTATGATGTGTTTTTAAAGGATTATACACA
AACGAAATAacctgaaaagttttttttctgattaataaaatttcattgaa
taaTTGAATCTACTGTTAAAAAACTTATGCTAAGATTTTACTATTTCACT
TTAAATCAACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028166-exon-sc0000667-1491911889:103291..103480 | TCONS_00028166-exon-sc0000667-1491911889:103291..103480 | Clytia hemisphaerica | exon |
| TCONS_00028166-exon-sc0000667-1510915933:103291..103480 | TCONS_00028166-exon-sc0000667-1510915933:103291..103480 | Clytia hemisphaerica | exon |
| TCONS_00028166-exon-sc0000667-1575043694:103291..103480 | TCONS_00028166-exon-sc0000667-1575043694:103291..103480 | Clytia hemisphaerica | exon |
| TCONS_00028166-exon-sc0000667-1491911889:110491..112054 | TCONS_00028166-exon-sc0000667-1491911889:110491..112054 | Clytia hemisphaerica | exon |
| TCONS_00028166-exon-sc0000667-1510915933:110491..112054 | TCONS_00028166-exon-sc0000667-1510915933:110491..112054 | Clytia hemisphaerica | exon |
| TCONS_00028166-exon-sc0000667-1575043694:110491..112054 | TCONS_00028166-exon-sc0000667-1575043694:110491..112054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000667 | supercontig | sc0000667:103291..112054 + |
Blast
The following BLAST results are available for this feature:
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