|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028174 ID=TCONS_00028174|Name=TCONS_00028174|organism=Clytia hemisphaerica|type=transcript|length=1675bp
cctctccttcacaactaaggctttttctttcctagaagcaaccctctcac
cacctcggacacctttgggcgtctgcaacgacgggtaccctccATAATTT
TGgcagggtcactatggcatttcattgaacacaaacttgCGTTACCTTAA
AAAGACATATaatcgaggcttacagacacaaaatgTTGACTAATGtaaaa
agtttagaagtataattttttttattgtattcggcattttaagccaaaac
gatgtcaggaattaacccacattatcgtattttaaaggcttttcatgtgc
aagcaaaaccgttaaccggcgtttgcgacgacgggaaccgtctagtaagA
CCTCTTCAATTTCTCGATAACAGCAGAAGGGAAGATTTTTCTCTTTATCA
GGGATGCATTGCAATTCTACTTCCTTACAAGTCGCTTCATGCGTAACCAC
CTTCCTTGGAAAAACCATTTTACTGATTTTGTTTCTCTTTAAGTAAGGCA
TCCAAGCTGCTTTATCACGAGGAAGCAAACCAGAGGTGACAGTGTAAAAC
ATGGAATCAATACACATCAAAATCTTCTTTCTCATTTGTAGACGAAAGTG
GAAAAACATTTCCATGTAGAATTGGTAGGTTTTCAAAGGAGATTCTTTGA
CTGTTTCAAGGTATTTCAACAAAACTTCAGTTTTGATACCAAATGGACCG
CTTACATAATCACAAAACATGCATCCATTATcagaaaagtcatacccttC
ATCAAGAGCCATTTCTCCAAGTCGTTGCTTCATTTGATAGCAACCTGCCC
TCCAATGACCAGAGGTGTTTCGATGAGATCCAGCAACTATTTCAGCCTTA
CCCAGGCTGATATCACGCACAAGTCGAATGATAGTTGAGAAGTTATCAAA
ACGTTCAATGTTTCTTGTTAACACAACATATTTCGTTTTGACACTCTTAG
CCATCTCTTCTAAAACGTCAGCATGGGTTTGAGAGGTTTCTTCTTGCTCT
ATGATATGCATGTTGGGCAGCTTAACTTTGGCAATATCTTTCAGTTTAGG
AATTTCTTTTGCACCTTTCTTAAGGAAAGCTAGGAAAGTCATATTCTTAT
ACATACCAAAAGCTGCATCTTCAAACAATTCTTCAGCTTGCGTGGCCGGT
ATTTCATTGACAAAGTTGAAAGTGACGGTGACAAGTGAGTTAAGGGGAGC
AACTTTACATGTTGGATCTAAAGGGATATGGTTCAAATATAGTGGATAAT
CTTGTTTTGCACCTTGGTATTTTTCTGGGCATATTTCCCCAGGatctttc
atttctttctttactttttcaattttgggtAAACGACCTGGATCTTCTCC
AGCTAAcacatttctttgtttgataGCTTCTTTCAGGTGTTTTAATCCTT
TCTCCAACTCAATAACCGATTTAGCTGATTCTGATTCATCTAATATTTTG
ATGACTGAGACATACGTTTCATCGAGAATGGTTTTGAGAGATTCAAGTGA
TTCACCATATTCTATCTCCTCATCTTCTTGTTCGATATCATTAGAATCAA
AATAAGGATgaattgatttcatcattgtttttctgaTCAATGACCAAACT
GTCAAAGTCAACAACACCACAATAAAAACTTTGACAGCAATTGAGACcga
cATTTccaaatatttctatttttac Run BLAST on NCBI transcript from alignment at sc0000667:69052..71573- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028174 ID=TCONS_00028174|Name=TCONS_00028174|organism=Clytia hemisphaerica|type=transcript|length=2522bp|location=Sequence derived from alignment at sc0000667:69052..71573- (Clytia hemisphaerica)
CCTCTCCTTCACAACTAAGGCTTTTTCTTTCCTAGAAGCAACCCTCTCAC
CACCTCGGACACCTTTGGGCGTCTGCAACGACGGGTACCCTCCATAATTT
TGGCAGGGTCACTATGGCATTTCATTGAACACAAACTTGCGTTACCTTAA
AAAGACATATAATCGAGGCTTACAGACACAAAATGTTGACTAATGTAAAA
AGTTTAGAAGTATAATTTTTTTTATTGTATTCGGCATTTTAAGCCAAAAC
GATGTCAGGAATTAACCCACATTATCGTATTTTAAAGGCTTTTCATGTGC
AAGCAAAACCGTTAACCGGCGTTTGCGACGACGGGAACCGTCTAGTAAGA
CCTCTTCAATTTCTCGATAACAGCAGAAGGGAAGATTTTTCTCTTTATCA
GGGATGCATTGCAATTCTACTTCCTTACAAGTCGCTTCATGCGTAACCAC
CTTCCTTGGAAAAACCATTTTACTGATTTTGTTTCTCTTTAAGTAAGGCA
TCCAAGCTGCTTTATCACGAGGAAGCAAACCAGAGGTGACAGTGTAAAAC
ATGGAATCAATACACATCAAAATCTTCTTTCTCATTTGTAGACGAAAGTG
GAAAAACATTTCCATGTAGAATTGGTAGGTTTTCAAAGGAGATTCTTTGA
CTGTTTCAAGGTATTTCAACAAAACTTCAGTTTTGATACCAAATGGACCG
CTTACATAATCACAAAACATGCATCCATTATCAGAAAAGTCATACCCTTC
ATCAAGAGCCATTTCTCCAAGTCGTTGCTTCATTTGATAGCAACCTGCCC
TCCAATGACCAGAGGTGTTTCGATGAGATCCAGCAACTATTTCAGCCTTA
CCCAGGCTGATATCACGCACAAGTCGAATGATAGTTGAGAAGTTATCAAA
ACGTTCAATGTTTCTTGTTAACACAACATATTTCGTTTTGACACTCTTAG
CCATCTCTTCTAAAACGTCAGCATGGGTTTGAGAGGTTTCTTCTTGCTCT
ATGATATGCATGTTGGGCAGCTTAACTTTGGCAATATCTTTCAGTTTAGG
AATTTCTTTTGCACCTTTCTTAAGGAAAGCTAGGAAAGTCATATTCTTAT
ACATACCAAAAGCTGCATCTTCAAACAATTCTTCAGCTTGCGTGGCCGGT
ATTTCATTGACAAAGTTGAAAGTGACGGTGACAAGTGAGTTAAGGGGAGC
AACTTTACATGTTGGATCTAAAGGGATATGGTTCAAATATAGTGGATAAT
CTTGTTTTGCACCTTGGTATTTTTCTGGGCATATTTCCCCAGGATCTTTC
ATTTCTTTCTTTACTTTTTCAATTTTGGGTAAACGACCTGGATCTTCTCC
AGCTAACACATTTCTTTGTTTGATAGCTTCTTTCAGGTGTTTTAATCCTT
TCTCCAACTCAATAACCGATTTAGCTGATTCTGATTCATCTAATATTTTG
ATGACTGAGACATACGTTTCATCGAGAATGGTTTTGAGAGATTCAAGTGA
TTCACCATATTCTATCTCCTCATCTTCTTGTTCGATATCATTAGAATCAA
AATAAGGATGAATTGATTTCATCATTGTTTTTCTGATCAATGACCAAACT
GTCAAAGTCAACAACACCACAATAAAAACTTTGACAGCAATTGAGACCGA
CATTTCAAAATATTTCTATTTTTTACTCTGTAAAATGAAAGAAAGGTAAG
TGATGTTTATGGATGTACCTGGTTTTATCAACACAAAATATCGCATTCAG
CTGAAAATCAACCCATTCAAAATCTAGGCCCACAAGTCAGTAAATTGTAA
AAAACANCAAAACGTCAGCATGGGTTTGAGAGGTTTCTTCTTGCTCTATG
ATATGCATGTTGGGCAGCTTAACTTTGGCAATATCTTTCAGTTTAGGAAT
TTCTTTTGCACCTTTCTTAAGGAAAGCTAGGAAAGTCATATTCTTATACA
TACCAAAAGCTGCATCTTCAAACAATTCTTCAGCTTGCGTGGCCGGTATT
TCATTGACAAAGTTGAAAGTGACGGTGACAAGTGAGTTAAGGGGAGCAAC
TTTACATGTTGGATCTAAAGGGATATGGTTCAAATATAGTGGATAATCTT
GTTTTGCACCTTGGTATTTTTCTGGGCATATTTCCCCAGGATCTTTCATT
TCTTTCTTTACTTTTTCAATTTTGGGTAAACGACCTGGATCTTCTCCAGC
TAACACATTTCTTTGTTTGATAGCTTCTTTCAGGTGTTTTAATCCTTTCT
CCAACTCAATAACCGATTTAGCTGATTCTGATTCATCTAATATTTTGATG
ACTGAGACATACGTTTCATCGAGAATGGTTTTGAGAGATTCAAGTGATTC
ACCATATTCTATCTCCTCATCTTCTTGTTCGATATCATTAGAATCAAAAT
AAGGATGAATTGATTTCATCATTGTTTTTCTGATCAATGACCAAACTGTC
AAAGTCAACAACACCACAATAAAAACTTTGACACCAATTGAGACCGACAT
TTCCAAATATTTCTATTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028174-exon-sc0000667-1575043694:69923..71573 | TCONS_00028174-exon-sc0000667-1575043694:69923..71573 | Clytia hemisphaerica | exon |
| TCONS_00028174-exon-sc0000667-1575043694:69052..69075 | TCONS_00028174-exon-sc0000667-1575043694:69052..69075 | Clytia hemisphaerica | exon |
| TCONS_00028174-exon-sc0000667-1510915933:69923..71573 | TCONS_00028174-exon-sc0000667-1510915933:69923..71573 | Clytia hemisphaerica | exon |
| TCONS_00028174-exon-sc0000667-1510915933:69052..69075 | TCONS_00028174-exon-sc0000667-1510915933:69052..69075 | Clytia hemisphaerica | exon |
| TCONS_00028174-exon-sc0000667-1491911889:69923..71573 | TCONS_00028174-exon-sc0000667-1491911889:69923..71573 | Clytia hemisphaerica | exon |
| TCONS_00028174-exon-sc0000667-1491911889:69052..69075 | TCONS_00028174-exon-sc0000667-1491911889:69052..69075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000667 | supercontig | sc0000667:69052..71573 - |
Blast
The following BLAST results are available for this feature:
|
