TCONS_00028179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028179
Unique NameTCONS_00028179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028179 ID=TCONS_00028179|Name=TCONS_00028179|organism=Clytia hemisphaerica|type=transcript|length=2140bp
ACTCGTGAATTCATAGAGACAGTTCATAATCGGATTGAAAATGTGTAAAA
AAGATGCTCATGTGATGTGTTACACAACCGATTACAGCAAATTCGATCGT
AGCTGTGTCTACCATCTTTTTCCGATCCCctccaattttttttgagcaAA
CTCGACATTTGATctcttctttgaaaatattgctAATGTGCCGAAATTAA
TTACATTATTTCTATGGTAACGATCAATAAATGGCGTTCGGATATAATAA
CAAAACAttataaaaagttatgaaaattgTCTTGTTATCAAATTCACTTA
CTAATAGGAAACCTTAGAAGGATGTATCAACTTTCAGGAGAAAAAGatgt
taaaaaaataagaagtGATATCATTTTTGAgcaagaagaaagaagaaaaa
ccgaaaattcaGGACGAAAGATTCCATGTTTTTGTATTGAAAATGGTAAA
CATCCGAAGTGGAACCTTTGTCCAATTGATACGACTCCGAAACTTTATTT
TGTCAACAATAACAGGCCAGGAAACAACAGAACGAAATCAAAGATACCTT
TACTGAAAACATCGAACGAAAAGTTGAAACTTCCTTCTTTAAGCTCACAA
AATTCACAATGGGTTACAAGTACATGTTACAGAAGAAGTAAGATTCCGAG
AAGAATTGACAGCAAAGAGACCGGAAATGATAAAGAACAACAACATTTGA
TGACCCTTCAGTTTCGTGTAGATTCCGCTAACACGGACCgaagaaaaact
ttgaagaaagGCTACCACGAAAAAGGTTTTTACAAGGCGCCACGCCCACA
CCATTTTCGAGATGATATCCATCGACCACTTCAATCAACTGAAGAGCTTG
GGAAGCCGGACTTTAAAGTGAACATAGAGCACGATCCAAGAAATATCAAC
TTCAAAAAACATACCATAAAAAACCTAAGGATCCCTGAGTTAGCATCAAC
GAAAGATGGCGATACATCGCGTTCGTTGGATAGACTTCCTATGGAAACGT
ACAAAGAAAAAGAACCGCGCTTCGAAAGCAAATTACTTTTTCCGAAAGGG
AAATATCGTAAAGGTCGTGATCCAAAAGATGTTCTCTACGAGAAGAtcgc
aaaagcaaaaaatctacCCATCTCCAATAAAGAGTTCGAAATTCAAAGAC
CTGATATCAATGATCATAAGACAGTTGATTTATTAGAAATAACAAGAAAT
GGTCCACGTCATAAATGTCTTAACCCCGAAGAATGAAACTCCATCAATAA
TGAGAAAGGAAATGGGCGGACAACAACAAACTTTAAAAGACATACGTCTG
ACGTGTTATAATGCATCAAAGAGCTACGGAATTAAGCAAGATGTCAGTAA
CCATCAATAGGCGATGATGTTTCCCAACTCAAGGTTGTCGAAAATCCGAA
TTTACGATAAGGGTGGCTAAGATGCAAATCGCATGCGAATCTTCATTTCT
GTAAGCTTTGGCATAACAGGATCAGAAATCATATCAAGCTCGAATTCGTC
TGGATCGAGATACcatatttcattaaaaaacaacaaaatgtttatttaca
gttaaaaatatctacaaaaatatAAACCCCATCCAAACAGGATataaaaa
taaagagaaaaaacgTCGTAATGTCAGGTGGTCGGTACTAATCGTCGCTG
TCGTAAGCTAATCGTTCGATTTCGCCGCGTaacctaaaaatatgtgtttt
CAAGACAGAATAATTTAACTATTTCTAATTATCATTATAAGGAGAAGTAT
AAATTTTCAATCAACTTAAATGAACATTGTCGTGGAGAGTGCTCGATACG
TTTCCATTGCCaaatatcaaatttcatttttcttcaaaaatttaaacatt
ctACAGTTTGTTTCACGCTTACGCAACCGCAGTATAAATATTaacttttt
aagaattttatggatattttttaaagtgtattttgtgaattatttttaca
gtaattttgatataaataaaGAAAGCGTCTAAAACTTATATCGGTAGCTT
CTTTGTGGGTTTACTTAACGCAAGTCTGACCTAAAAATATCATTACCCGA
GACTACGTAACTAACAAGCTTGCCATCAGAACTTGCAACTATGGATACAT
ACCTGTCTATGATTGGGGTGTATACTTCACAGACTTGGTG
Run BLAST on NCBI

transcript from alignment at sc0000667:96509..103473-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028179 ID=TCONS_00028179|Name=TCONS_00028179|organism=Clytia hemisphaerica|type=transcript|length=6965bp|location=Sequence derived from alignment at sc0000667:96509..103473- (Clytia hemisphaerica)
ACTCGTGAATTCATAGAGACAGTTCATAATCGGATTGAAAATGTGTAAAA
AAGATGCTCATGTGATGTGTTACACAACCGATTACAGCAAATTCGATCGT
AGCTGTGTCTACCATCTTTTTCCGATCCCCTCCAATTTTTTTTGAGCAAA
CTCGACATTTGATCTCTTCTTTGAAAATATTGCTAATGTGCCGAAATTAA
TTACATTATTTCTATGGTAACGATCAATAAATGGCGTTCGGATATAATAA
CAAAACATTATAAAAAGTTATGAAAATTGTCTTGTTATCAAATTCACTTA
CTAATAGGAAACCTTAGAAGGATGTATCAACTTTCAGGAGAAAAAGATGT
TAAAAAAATAAGAAGTGATATCATTTTTGAGCAAGAAGAAAGAAGAAAAA
CCGAAAATTCAGGACGAAAGATTCCATGTTTTTGTATTGAAAATGGTAAA
CATCCGAAGTGGAACCTTTGTCCAATTGATACGACTCCGAAACTTTATTT
TGTCAACAATAACAGGCCAGGAAACAACAGAACGAAATCAAAGATACCTT
TACTGAAAACATCGAACGAAAAGTTGAAACTTCCTTCTTTAAGCTCACAA
AATTCACAATGGGTTACAAGTACATGTTACAGAAGAAGTAAGATTCCGAG
AAGAATTGACAGCAAAGAGACCGGAAATGATAAAGAACAACAACATTTGA
TGACCCTTCAGTTTCGTGTAGATTCCGCTAACACGGACCGAAGAAAAACT
TTGAAGAAAGGCTACCACGAAAAAGGTTTTTACAAGGCGCCACGCCCACA
CCATTTTCGAGATGATATCCATCGACCAGTAAGTTTACGAGCAGCCATTA
GCGTATTGACCACACCCACTTGTAAATTATTAGATTAGATTGACGACTGA
CATTGTGCGCAAGAAACTGCGTCAATGTCAATGCAATAGCTTCACAATTT
TGACGTCATTCACCCTCTCTCATTTGATTCGAACTTCAAACCTAAGAGAA
GTGCCAACCCTACCCACGGTCGTTTTAAAGAAATCGAGAAAAATTTAAAC
ATTTTCAGGATTTTTTCTGCTCGTCAAAATTAGTTCTCGCCAAAATAAGT
TCCTCTATTCCCTTCACCTATATTTTTCCGTAGTCCCCAGGTTGGCAAAT
ATATTGACTGTTGTTAGTTATAGCAAAAGTCGATAAAAAAAGTTAATAAA
GATGATTTTACTCTTTCCATTACTGTTCCTTCCTGTTTTTAGCTTCAATC
AACTGAAGAGCTTGGGAAGCCGGACTTTAAAGTGAACATAGAGCACGATC
CAAGAAATATCAACTTCAAAAAACATACCATAAAAAACCTAAGGATCCCT
GGTAAGAAATATTCTAGTCGTCCACATTTGAAGAAAATGGTATCACTGAA
AGTAAAAGCTGGAGCGCAGAGGGCGAAAATTTCCATTCTAGTAGCCAATT
TTAATCAATTTATTGCAGCAAAGGATCAACATGAAAGAAAAGAATTTTAG
AGTCCGGGGTTTGAAAATGAAGTCAATTCAAAAGTGCACTGAGCAAATTT
TAGAAATTCTTCTCAACTTTTTTTCAATAGAGTTAGCATCAACGAAAGAT
GGCGATACATCGCGTTCGTTGGATAGACTTCCTATGGAAACGTACAAAGA
AAAAGAACCGCGCTTCGAAAGCAAATTACTTTTTCCGAAAGGGGTAAGTT
TACGTTAATTCAAAAAACAAAGTTACTGTAGTGTCTTTAAAAACTTCTAA
AAGGTATTCTGACAAGCTACAAACATTGAAAATCATCTTCAAATTTAATC
TTTTACTTTAAAATTGATATTAATAATTCATTTTAGAAATATCGTAAAGG
TCGTGATCCAAAAGATGTTCTCTACGAGAAGATCGCAAAAGCAAAAAATC
TACCCATCTCCAATAAAGAGTTCGAAATTCAAAGACCTGATATCAATGAT
CATAAGACAGTTGATTTATTAGAAATAACAAGAAATGGTCCACGTCATAA
ATGTCTTAACCCCGTAGAATGAAACTCCATCAATAATGAGAAAGGAAATG
GGCGGACAACAACAAACTTTAAAAGACATACGTCTGACATGTTATAATGC
ATCAAAGAGCTACGGAATTAAGCAAGATGTCAGTAACCATCAATAGGCGA
TGATGTTTCCCAACTCAAGGTTGTCGAAAATCCGAATTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGCCCCTTGAAAAGGGGTCCTACCAC
CTTTTTTGACTCATTTCAACCTTTTCCAAGCTACTTTTCTTCAAAAACAA
AAATAAAACAATGCAATGTCTTCTTTTTTCAACAAAAGATATATCTTCCG
TTATTTTGATAAATATACTAAATATTTTACAAATATTTTTATATAAACCA
TCAAAGAATCCCCCTCCAAATTTCAGGTCTCTAGCTACACTAGAAAAAGA
GATATGCAAAATTGAAGAAGCATGACTGGAAAATTTCTTTTTTTTCTTTT
TTGACACATTTTTCGAATTTTTCCAAGCTATTTTCCTTACCTTTTTTTTG
ACATTTTTAGTCAAATTTTTTACACTAAAATTTGAATATCTTTACAACCA
CTTATCCTCTGGACAGTCAGTACCTTTAGCCAAATTAGGAATATTTTTCT
TACTTTTACTAACTAGTATTCCTAATTAGGAATCTTATTCCTAATTAGGA
AGAAAAAAATTCCTAATTAGGAATATGAAGCAAATACCTAGATTTTCTCC
AAAAATAGAAAAAATCGNCAGCAAATTCGATCGTAGCTGTGTCTACCATC
TTTTTCCGATCCCCTCCAATTTTTTTTGAGCAAACTCGACATTTGATCTC
TTCTTTGAAAATATTGCTAATGTGCCGAAATTAATTACATTATTTCTATG
GTAACGATCAATAAATGGCGTTCGGATATAATAACAAAACATTATAAAAA
GTTATGAAAATTGTCTTGTTATCAAATTCACTTACTAATAGGAAACCTTA
GAAGGATGTATCAACTTTCAGGAGAAAAAGATGTTAAAAAAATAAGAAGT
GATATCATTTTTGAGCAAGAAGAAAGAAGAAAAACCGAAAATTCAGGACG
AAAGATTCCATGTTTTTGTATTGAAAATGGTAAACATCCGAAGTGGAACC
TTTGTCCAATTGATACGACTCCGAAACTTTATTTTGTCAACAATAACAGG
CCAGGAAACAACAGAACGAAATCAAAGATACCTTTACTGAAAACATCGAA
CGAAAAGTTGAAACTTCCTTCTTTAAGCTCACAAAATTCACAATGGGTTA
CAAGTACATGTTACAGAAGAAGTAAGATTCCGAGAAGAATTGACAGCAAA
GAGACCGGAAATGATAAAGAACAACAACATTTGATGACCCTTCAGTTTCG
TGTAGATTCCGCTAACACGGACCGAAGAAAAACTTTGAAGAAAGGCTACC
ACGAAAAAGGTTTTTACAAGGCGCCACGCCCACACCATTTTCGAGATGAT
ATCCATCGACCAGTAAGTTTACGAGCAGCCATTAGCGTATTGACCACACC
CACTTGTAAATTATTAGATTAGATTGACGACTGACATTGTGCGCAAGAAA
CTGCGTCAATGTCAATGCAATAGCTTCACAATTTTGACGTCATTCACCCT
CTCTCATTTGATTCGAACTTCAAACCTAAGAGAAGTGCCAACCCTACCCA
CGGTCGTTTTAAAGAAATCGAGAAAAATTTAAACATTTTCAGGATTTTTT
CTGCTCGTCAAAATTAGTTCTCGCCAAAATAAGTTCCTCTATTCCCTTCA
CCTATATTTTTCCGTAGTCCCCAGGTTGGCAAATATATTGACTGTTGTTA
GTTATAGCAAAAGTCGATAAAAAAAGTTAANGGTTGGCAAATATATTGAC
TGTTAGTTATAGTCAAAGTCGATAAAAAAAGTTAATAAAGATGATTTTAC
TCTTTCCATTACTGTTCCTTCCTGTTTTTAGCTTCAATCAACCGAAGAGC
TTGGGAAGCCGGACTTTAAAGTGAACATAGAGCACGATCCAAGAAATATC
AACTTCAAAAAACATACCTTAAGAAACCTAAGGATCCCTGGTAAGAAATA
TTCTAGTCGTCCACATTTGAAGAAAATTATATCACTGAAAGTAAAAGCTG
GAGCGCAGAGGGCCAAAATTTCCATTCTAGTAGCCAATTTTAATCAATTT
AATTCAGCAAAGGATCAACATGAAAGAAAAGAATTTTAGAGTCCGGGGTT
TGAAAATGAAGTCAATTCAAAAGGGCACTGAGCAAATTTTAGAAATTCTT
CTCAACTTTTTTTCAATAGAGTTAGCATCAACGAAAGATGGCGATACATC
GCGTTCGTTGGATAGACTTCCTATGGAAACGTACAAAGAAAAAGAACCGC
GCTTCGAAAGCAAATTACTTTTTCCGAAAGGGGTAAGTTTACGTTAATTC
AAAAAACAAAGTTACTGTAGTGTCTTTAAAAACTTCTAAAAGGTATTCTG
ACAAGCTACAAACATTGAAAATCATCTTCAAATTTAATCTTTTACTTTAA
AATTGATATTAATAATTCATTTTAGAAATATCGTAAAGGTCGTGATCCAA
AAGATGTTCTCTACGAGAAGATCGCAAAAGCAAAAAATCTACCCATCTCC
AATAAAGAGTTCGAAATTCAAAGACCTGATATCAATGATCATAAGACAGT
TGATTTATTAGAAATAACAAGAAATGGTCCACGTCATAAATGTCTTAACC
CCGAAGAATGAAACTCCATCAATAATGAGAAAGGAAATGGGCGGACAACA
ACAAACTTTAAAAGACATACGTCTGACGTGTTATAATGCATCAAAGAGCT
ACGGAATTAAGCAAGATGTCAGTAACCATCAATAGGCGATGATGTTTCCC
AACTCAAGGTTGTCGAAAATCCGAATTTACGATAAGGGTGGCTAAGATGC
AAATCGCATGCGAATCTTCATTTCTGTAAGCTTTGGCATAACAGGATCAG
AAATCATATCAAGCTCGAATTCGTCTGGATCGAGATACCATATTTCATTA
AAAAACAACAAAATGTTTATTTACAGTTAAAAATATCTACAAAAATATAA
ACCCCATCCAAACAGGATATAAAAATAAAGAGAAAAAACGTCGTAATGTC
AGGTGGTCGGTACTAATCGTCGCTGTCGTAAGCTAATCGTTCGATTTCGC
CGCGTAACCTAAAAATATGTGTTTTCAAGACAGAATAATTTAACTATTTC
TAATTATCATTATAAGGAGAAGTATAAATTTTCAATCAACTTAAATGAAC
ATTGTCGTGGAGAGTGCTCGATACGTTTCCATTGCCAAATATCAAATTTC
ATTTTTCTTCAAAAATTTAAACATTCTACAGTTTGTTTCACGCTTACGCA
ACCGCAGTATAAATATTAACTTTTTAAGAATTTTATGGATATTTTTTAAA
GTGTATTTTGTGAATTATTTTTACAGTAATTTTGATATAAATAAAGAAAG
CGTCTAAAACTTATATCGGTAGCTTCTTTGTGGGTTTACTTAACGCAAGT
CTGACCTAAAAATATCATTACCCGAGACTACGTAACTAACAAGCTTGCCA
TCAGAACTTGCAACTATGGATACATACCTGTCTATGATTGGGGTGTATAC
TTCACAGACTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015948XLOC_015948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028179-exon-sc0000667-1575043694:102646..103473TCONS_00028179-exon-sc0000667-1575043694:102646..103473Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1575043694:102123..102231TCONS_00028179-exon-sc0000667-1575043694:102123..102231Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1575043694:97742..97854TCONS_00028179-exon-sc0000667-1575043694:97742..97854Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1575043694:96509..97598TCONS_00028179-exon-sc0000667-1575043694:96509..97598Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1510915933:102646..103473TCONS_00028179-exon-sc0000667-1510915933:102646..103473Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1510915933:102123..102231TCONS_00028179-exon-sc0000667-1510915933:102123..102231Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1510915933:97742..97854TCONS_00028179-exon-sc0000667-1510915933:97742..97854Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1510915933:96509..97598TCONS_00028179-exon-sc0000667-1510915933:96509..97598Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1491911889:102646..103473TCONS_00028179-exon-sc0000667-1491911889:102646..103473Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1491911889:102123..102231TCONS_00028179-exon-sc0000667-1491911889:102123..102231Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1491911889:97742..97854TCONS_00028179-exon-sc0000667-1491911889:97742..97854Clytia hemisphaericaexon
TCONS_00028179-exon-sc0000667-1491911889:96509..97598TCONS_00028179-exon-sc0000667-1491911889:96509..97598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000667supercontigsc0000667:96509..103473 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.55434	0.38612	0.717316	0.96495	9.2149	6.88545	7.09064	7.45546	3.03237	6.61895	2.24236	2.39453	0.277374	0.219478	0.629544	0.337799	0.0594487	0.365598	0.168364	0.264272	0.382834	0	0.181599	0	1.43751	0.867868	6.18947	4.75137	1.14265	1.07463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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