TCONS_00028200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028200
Unique NameTCONS_00028200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028200 ID=TCONS_00028200|Name=TCONS_00028200|organism=Clytia hemisphaerica|type=transcript|length=2107bp
AAAAAGGTAAAGTTAAATCAATACTATTATTCTCAGTAACTTACCAGATT
TAGCTGGGATTGGAGCAGCTTGTTGTTGTGGGTATGCTCCACTTGGTGGT
GGATAAGGAGTACCTTGTGGACCAGCTTGAGGAGGTGGGTACGGGGTAGG
TCCCACAGGATATTGAGTTTGTGCAGCAGGATATGGCTGAGCTTGGGAAG
GATATGGCTGAGCTTGGGAAGGATAAGTCTGTTGTTGAGGTGGATACTGT
TGTGGTGGGTATTGCTGTGGTGGATACGTGTTGTTTGTTGGCTGGTAAGC
AGGTGGCTGTTGGTAGGGAGGTTGACCTGGTGCTGATTCTCCTACTGATG
AATATCCAACTACAGCACCTCCATGTGAAGCTGTTGCATTTATACCTTGA
TTCACATGGCTCTTTATCTGAGATCGCCGATAAAATACAGCCACAATTAT
CACAACTATTCCCAAACAAAGAAAGATTGGTCCAACAATTCtagtatttt
ttatattttgtcgGTCTCTCTCATTATCATCATTACAAAAATCACACCAT
GATTCCGAGCTATTTGACCAAAAAGGTTTGTGAAGATAACCATACATGGT
CATCACAAAACCAATGAAAACAATCACTATTCCCAAAGCAAGAAAACAAC
CAAATTTGGCTTTTGTTCCAGCCATTTTCAATGTCGGTTTTATACAACAA
AAAGTATTAGACTATATCgctactttttttctaaaattaaatacaaCAAG
TTTTCttaatttgaccattttttatAGAGTAAAAATGGTAACATAAATCT
CTCTCTATATAATAAGCAACCCTGATTTTGGGCTTATGGCTGGGGTTGCT
TTGCATTCTATTATAAGCTTAATTTTTGAGCAATAGGGGCGGTGCCTAAT
ATCATGCTTGTTTAGTCATGTGCTATTGTTAATATCACGAAAAGTGTTCC
TTTTAAGAGActttattaaaaatattttgctgatttcaagGCTTCCAACC
TTAGCAACTGgtaacttttataaaaaaagtgtacaatcAGCAATCGATTT
AATTTTATCAGTTTATTTTTTGGCAACAAAAACAGGGGATATGTTGATAT
TTCTAACTGTTGATATATTGCATAAGAATGGGGATGGTTACAACATGGTA
AGCAATAATACCCCCAAGTAGTATTAGGTTTTTTTTCAGTATGATGGTAA
AACCCATTATCTCAAAAAGCACAAAATATATTTAGTTGATAAGAGAATAT
TTTGGCGTCATGATGTgattaaaattattttgggcatgATGCCCTAATCA
GGGACTTTACTACGcactctttgtttttttctaaatatcATTAGAAATAA
TGTGAAAATTTATGAACACCAGGAAAATGTTCTGTAAATcacaagaaaaa
tcagaaaaaatttagCTGTGGACAAATTAGCACTTTGATTTTAACAAAGT
AATATAGTTTAATGTCAAGGATGATtatgaaaaatccctaggaaagaAAT
TAGTTTAAACCTTTTGGTTCTATCTCCATAAATTAATAGATAGAGCAGTA
TTATATTGAGAGTTGACTAAATCTCCCCCCTTGCCTCCACCCCAATCATC
AGTGAAACGAGATACGTTAGAAATGACAAATCACTATAAAGtcttcaaaa
acatttttgacgCCACATTTAAACGTCAGATAGTTCAAAGAGATGGCGCt
atggtatagtggtcattgtccaatattggactcacagctcgaacctgTCT
TTCTTGTGTATATacataaaattatgaaaaaacacACGACGATTCTCCTG
TCTATTATTGGACAGTCATTTGTACCCATTTGTCCATTGGATGATGGCTA
TTATATGTATCATGCAAGTTTCCCTCGCTCCACTGCATGGTTCCTGTCAt
ctaaaatatctcaaaccatctgaatATCCCTTTAAACTTCTTGGTGATGA
AGTAATGCTGAGCAAAATTAAAAGTCATCATGAAAAGATTAAGAAAAATA
GAAAGAGTACATATTTATTTGGAAACTTTTGACTAGAAAAAGATAAAGTA
ACCTGATTGTCTTCAAAGCTGTGTGATTGATGAGATAGACGTACTACAAC
AACTGTG
Run BLAST on NCBI

transcript from alignment at sc0000670:137265..139939+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028200 ID=TCONS_00028200|Name=TCONS_00028200|organism=Clytia hemisphaerica|type=transcript|length=2675bp|location=Sequence derived from alignment at sc0000670:137265..139939+ (Clytia hemisphaerica)
AAAAAGGTAAAGTTAAATCAATACTATTATTCTCAGTAACTTACCAGATT
TAGCTGGGATTGGAGCAGCTTGTTGTTGTGGGTATGCTCCACTTGGTGGT
GGATAAGGAGTACCTTGTGGACCAGCTTGAGGAGGTGGGTACGGGGTAGG
TCCCACAGGATATTGAGTTTGTGCAGCAGGATATGGCTGAGCTTGGGAAG
GATATGGCTGAGCTTGGGAAGGATAAGTCTGTTGTTGAGGTGGATACTGT
TGTGGTGGGTATTGCTGTGGTGGATACGTGTTGTTTGTTGGCTGGTAAGC
AGGTGGCTGTTGGTAGGGAGGTTGACCTGGTGCTGATTCTCCTACTGATG
AATATCCAACTACAGCACCTCCATGTGAAGCTGTTGCATTTATACCTTGA
TTCACATGGCTCTTTATCTGAGATCGCCGATAAAATACAGCCACAATTAT
CACAACTATTCCCAAACAAAGAAAGATTGGTCCAACAATTCtagtatttt
ttatattttgtcgGTCTCTCTCATTATCATCATTACAAAAATCACACCAT
GATTCCGAGCTATTTGACCAAAAAGGTTTGTGAAGATAACCATACATGGT
CATCACAAAACCAATGAAAACAATCACTATTCCCAAAGCAAGAAAACAAC
CAAATTTGGCTTTTGTTCCAGCCATTTTCAATGTCGGTTTTATACAACAA
AAAGTATTAGACTATATCgctactttttttctaaaattaaatacaaCAAG
TTTTCttaatttgaccattttttatAGAGTAAAAATGGTAACATAAATCT
CTCTCTATATAATAAGCAACCCTGATTTTGGGCTTATGGCTGGGGTTGCT
TTGCATTCTATTATAAGCTTAATTTTTGAGCAATAGGGGCGGTGCCTAAT
ATCATGCTTGTTTAGTCATGTGCTATTGTTAATATCACGAAAAGTGTTCC
TTTTAAGAGActttattaaaaatattttgctgatttcaagGCTTCCAACC
TTAGCAACTGgtaacttttataaaaaaagtgtacaatcAGCAATCGATTT
AATTTTATCAGTTTATTTTTTGGCAACAAAAACAGGGGATATGTTGATAT
TTCTAACTGTTGATATATTGCATAAGAATGGGGATGGTTACAACATGGTA
AGCAATAATACCCCCAAGTAGTATTAGGCTTTTTTCAGTATGATGGTAAA
ACCCATTATCTCAAAAAGCACAAAATATATTTAGTTGATAAGAGAATATT
TTGGCGTCATGATGTgattaaaattattttgggcatgATGCCCTAATCAG
GGACTTTACTACGcactctttgtttttttctaaatatcATTAGAAATAAT
GTGAAAATTTATGAACACCAGGAAAATGTTCTGTAAATcacaagaaaaat
cagaaaaaatttagCTGTGGACAAATGAGCACTTTGATTTTAACAAAGTA
ATATAGTTTAATGTCAAGGATGATtatgaaaaatccctaggaaagaAATT
AGTTTAAACCTTTCGGTTTTATCTCCATAAATTAATAGATAGAGCAGTAT
TCTATTGAGAGTTGACTAAATCTCCCCCCTTGCCTCCACCCCAATCATCA
GTGAAACGAGATACGTTAGAAATGACAAATCACTATAAAGtcttcaaaaa
catttttgacgCCACATTTAAACGTCAGATAGTTCAAAGAGATGGCGCta
tggtatagtggtcattgtcCAANCAATACCCCCAAGTAGTATTAGGTTTT
TTTTCAGTATGATGGTAAAACCCATTATCTCAAAAAGCACAAAATATATT
TAGTTGATAAGAGAATATTTTGGCGTCATGATGTgattaaaattattttg
ggcatgATGCCCTAATCAGGGACTTTACTACGcactctttgtttttttct
aaatatcATTAGAAATAATGTGAAAATTTATGAACACCAGGAAAATGTTC
TGTAAATcacaagaaaaatcagaaaaaatttagCTGTGGACAAATTAGCA
CTTTGATTTTAACAAAGTAATATAGTTTAATGTCAAGGATGATtatgaaa
aatccctaggaaagaAATTAGTTTAAACCTTTTGGTTCTATCTCCATAAA
TTAATAGATAGAGCAGTATTATATTGAGAGTTGACTAAATCTCCCCCCTT
GCCTCCACCCCAATCATCAGTGAAACGAGATACGTTAGAAATGACAAATC
ACTATAAAGtcttcaaaaacatttttgacgCCACATTTAAACGTCAGATA
GTTCAAAGAGATGGCGCtatggtatagtggtcattgtccaatattggact
cacagctcgaacctgTCTTTCTTGTGTATATacataaaattatgaaaaaa
cacACGACGATTCTCCTGTCTATTATTGGACAGTCATTTGTACCCATTTG
TCCATTGGATGATGGCTATTATATGTATCATGCAAGTTTCCCTCGCTCCA
CTGCATGGTTCCTGTCAtctaaaatatctcaaaccatctgaatATCCCTT
TAAACTTCTTGGTGATGAAGTAATGCTGAGCAAAATTAAAAGTCATCATG
AAAAGATTAAGAAAAATAGAAAGAGTACATATTTATTTGGAAACTTTTGA
CTAGAAAAAGATAAAGTAACCTGATTGTCTTCAAAGCTGTGTGATTGATG
AGATAGACGTACTACAACAACTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015964XLOC_015964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028200-exon-sc0000670-1491911889:137265..138441TCONS_00028200-exon-sc0000670-1491911889:137265..138441Clytia hemisphaericaexon
TCONS_00028200-exon-sc0000670-1510915933:137265..138441TCONS_00028200-exon-sc0000670-1510915933:137265..138441Clytia hemisphaericaexon
TCONS_00028200-exon-sc0000670-1575043694:137265..138441TCONS_00028200-exon-sc0000670-1575043694:137265..138441Clytia hemisphaericaexon
TCONS_00028200-exon-sc0000670-1491911889:139010..139939TCONS_00028200-exon-sc0000670-1491911889:139010..139939Clytia hemisphaericaexon
TCONS_00028200-exon-sc0000670-1510915933:139010..139939TCONS_00028200-exon-sc0000670-1510915933:139010..139939Clytia hemisphaericaexon
TCONS_00028200-exon-sc0000670-1575043694:139010..139939TCONS_00028200-exon-sc0000670-1575043694:139010..139939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:137265..139939 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.134672	0.152066	0.208882	7.54407	3.14055	4.90752	4.93912	1.36875	3.23244	2.31993	1.61563	2.29649	1.40765	0.827211	1.32359	0	0	0	0.256204	0.110044	0.68684	0	0	0.570913	1.6876	0.923375	1.36281	0.325608	0.777142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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