TCONS_00028208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028208
Unique NameTCONS_00028208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028208 ID=TCONS_00028208|Name=TCONS_00028208|organism=Clytia hemisphaerica|type=transcript|length=625bp
TGGTTGTATgagaaatcaaaagaaaaactatgaTGTTACTTTCTTTGGTC
TGCCCAAAGATAATACTTTAGCAAAAGAATGGGTCAATcgtttgaaaaca
aaaagagaaGACCCTCTCCCGAAGAAGGTTATTTTATGTGAAAGTCATTT
TAGTGCAGAAATGTTTGACAAGTCAGTGGATCTTCAAAGAAGATTCATGA
AAGAAAGAGGCATGAAGTTAAAGCAACGAAAACTAATTACCACTGCCGTA
CCAGACATTTTCCCATTCTCGTCTTCGAAACAAGCGGTAAAGAGACCAAA
TATTATGACAAAGATCAGGGAACGACAAaaaaagaatcGATCGGCACAAT
CGCAAACAGATCATGTTCAACCGCCCATCCAGACCAGTGATGTTGGAACT
CAAACACGCGAAGAAAACGTTACATCAGAGGAACTAAATACCATATTCAA
CACAACAGCACTTGAAACGATGGCTGATTTGCTAGGTTTACCTTCCTTGC
CATCAATCGTTCGAAAGTTTTATCGGACACACGAAAAGGATGATCAAAAC
GCGGACCAGAACGAAGAAAAATTTGGGAGCTTCCATCAGATAGCAGATag
ttttgactaattttgacACTTCTGG
Run BLAST on NCBI

protein sequence of TCONS_00028208-protein

>TCONS_00028208-protein ID=TCONS_00028208-protein|Name=TCONS_00028208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
GCMRNQKKNYDVTFFGLPKDNTLAKEWVNRLKTKREDPLPKKVILCESHF
SAEMFDKSVDLQRRFMKERGMKLKQRKLITTAVPDIFPFSSSKQAVKRPN
IMTKIRERQKKNRSAQSQTDHVQPPIQTSDVGTQTREENVTSEELNTIFN
TTALETMADLLGLPSLPSIVRKFYRTHEKDDQNADQNEEKFGSFHQIADS
FD
Run BLAST on NCBI

transcript from alignment at sc0000670:84371..86138-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028208 ID=TCONS_00028208|Name=TCONS_00028208|organism=Clytia hemisphaerica|type=transcript|length=1768bp|location=Sequence derived from alignment at sc0000670:84371..86138- (Clytia hemisphaerica)
TGGTTGTATGAGAAATCAAAAGAAAAACTATGATGTTACTTTCTTTGGTC
TGCCCAAAGATAATACTTTAGCAAAAGAATGGGTCAATCGTTTGAAAACA
AAAAGAGAAGACCCTCTCCCGAAGAAGGTTATTTTATGTGAAAGTCATTT
TAGTGCAGAAATGTTTGACAAGTCAGTGGATCTTCAAAGAAGATTCATGA
AAGGTACGTATACATACCTTACCCTTGCTGAAAAGCTTACTTCTTCATCT
GTATCATTATCAGCCTTTAATCTACACACTAGAACTACGTATGTTTCAAC
TGGGAAATTACCCAAATAATCATGGCCGGTGAAAATAGCTAAGCTCAACT
TAAAAGCATATGCAAGTGTTTCTTCCTAAGAAAATAATATCTGTCAATCA
TTTTAGAAAGAGGCATGAAGTTAAAGCAACGAAAACTAATTACCACTGCC
GTACCAGACATTTTCCCATTCTCGTCTTCGAAACAAGCGGTAAAGAGACC
AAATATTATGACAAAGATCAGGGAACGACAAGTAAGTAGATTATACATAT
TTCCCAAAAATCAACATTAGAATATCGTTTGATAATTTCGAGGAAACAAC
GTTACTCTAAGATCTTGTATAATAACTGCAGTGGGTCTAAATAAAAGTGG
GGTTTTCCCAGCCGGCACACAAAGTTATGTCAATGTTCATTTAACGTACA
CAACCTCCATATAACGTTAGATGGACGCTAAAACAACGTTGTGTGCCAAC
TGGGTTCAGGACTAAAGTAGATCATTTTTAATTTACATTGTTAAAGACTT
GTTGAATGAACCTACAGAGTCTCCACAACCTCCAGATTTGCAAGAATCTG
CGCCAATACCTCCATCAGGTCAACTTTTGTCACCTTCACTTAGCCCTGTT
ATTGAATGGCAAGAAACACTCGTGCATAAGAGAAGTACTCAGACCAATTT
GAGAACACAAATTGTGAGTAGATTTTGCCAATAAAGATGCATTATAAGGA
AATAGACATATCAGAAGTTGATTAATATGATATATTGCTTGATCCTTTTT
TCCTTATTTTAGAAAAAGAATCGATCGGCACAATCGCAAACAGATCATGT
TCAACCGCCCATCCAGACCAGTGATGTTGGAACTCAAACACGCGAAGAAA
ACGTTACATCAGAGGAACTAAATACCATATTCAACACAACAGCACTTGAA
ACGATGGCTGATTTGCTAGGTTTACCTTCCTTGCCATCAATCGTTCGGTG
AGTTGAATCAAATCTTTTGTTGAATAGAGAACGAAATCTAAATTTGTGCC
TCGGTGAGATTTGGCAGTTTGAATGGATGATTGAAAAATAAGAAATTTAC
AAAGGAGCTAGATTTTTAAGTGTTAATACCGGGTGTAGAAATAACATTAA
TCAATAGCATTTAAATCTGAGACAAGTTCCAGAGTGGATCCCAAAACTAT
TTACCACCACTTCTTCATAGAAAGTTTTATCGGACACACGAAAAGGATGA
TCAAAACGCGGACCAGAACGAAGAAAAATTTGGGAGCTTCCATCAGGTAA
TACTTGCATCGTTCAATACACGCTTTTTTTATAAGAATAGTGTACTTTGG
CTGAGGATGAGCATTGTTCTTATTTTTCTATTGTTCTAAACAATAATAGT
CCTATTGTTCTAATTCTAAAATCTCGCTCTGATATTTTTAATAGAAGTTT
TTCTTATAAAAAAAGGCTGTATCTTTTTTCAGATAGCAGATAGTTTTGAC
TAATTTTGACACTTCTGG

Coding sequence (CDS) from alignment at sc0000670:84371..86138-

>TCONS_00028208 ID=TCONS_00028208|Name=TCONS_00028208|organism=Clytia hemisphaerica|type=CDS|length=3045bp|location=Sequence derived from alignment at sc0000670:84371..86138- (Clytia hemisphaerica)
ATAGCAGATAGTTTTGACTAAAAAGTTTTATCGGACACACGAAAAGGATG
ATCAAAACGCGGACCAGAACGAAGAAAAATTTGGGAGCTTCCATCAGAAA
AAGAATCGATCGGCACAATCGCAAACAGATCATGTTCAACCGCCCATCCA
GACCAGTGATGTTGGAACTCAAACACGCGAAGAAAACGTTACATCAGAGG
AACTAAATACCATATTCAACACAACAGCACTTGAAACGATGGCTGATTTG
CTAGGTTTACCTTCCTTGCCATCAATCGTTCGAAAGAGGCATGAAGTTAA
AGCAACGAAAACTAATTACCACTGCCGTACCAGACATTTTCCCATTCTCG
TCTTCGAAACAAGCGGTAAAGAGACCAAATATTATGACAAAGATCAGGGA
ACGACAAGGTTGTATGAGAAATCAAAAGAAAAACTATGATGTTACTTTCT
TTGGTCTGCCCAAAGATAATACTTTAGCAAAAGAATGGGTCAATCGTTTG
AAAACAAAAAGAGAAGACCCTCTCCCGAAGAAGGTTATTTTATGTGAAAG
TCATTTTAGTGCAGAAATGTTTGACAAGTCAGTGGATCTTCAAAGAAGAT
TCATGAAAGATAGCAGATAGTTTTGACTAAAAAGTTTTATCGGACACACG
AAAAGGATGATCAAAACGCGGACCAGAACGAAGAAAAATTTGGGAGCTTC
CATCAGAAAAAGAATCGATCGGCACAATCGCAAACAGATCATGTTCAACC
GCCCATCCAGACCAGTGATGTTGGAACTCAAACACGCGAAGAAAACGTTA
CATCAGAGGAACTAAATACCATATTCAACACAACAGCACTTGAAACGATG
GCTGATTTGCTAGGTTTACCTTCCTTGCCATCAATCGTTCGAAAGAGGCA
TGAAGTTAAAGCAACGAAAACTAATTACCACTGCCGTACCAGACATTTTC
CCATTCTCGTCTTCGAAACAAGCGGTAAAGAGACCAAATATTATGACAAA
GATCAGGGAACGACAAGGTTGTATGAGAAATCAAAAGAAAAACTATGATG
TTACTTTCTTTGGTCTGCCCAAAGATAATACTTTAGCAAAAGAATGGGTC
AATCGTTTGAAAACAAAAAGAGAAGACCCTCTCCCGAAGAAGGTTATTTT
ATGTGAAAGTCATTTTAGTGCAGAAATGTTTGACAAGTCAGTGGATCTTC
AAAGAAGATTCATGAAAGATAGCAGATAGTTTTGACTAAAAAGTTTTATC
GGACACACGAAAAGGATGATCAAAACGCGGACCAGAACGAAGAAAAATTT
GGGAGCTTCCATCAGAAAAAGAATCGATCGGCACAATCGCAAACAGATCA
TGTTCAACCGCCCATCCAGACCAGTGATGTTGGAACTCAAACACGCGAAG
AAAACGTTACATCAGAGGAACTAAATACCATATTCAACACAACAGCACTT
GAAACGATGGCTGATTTGCTAGGTTTACCTTCCTTGCCATCAATCGTTCG
AAAGAGGCATGAAGTTAAAGCAACGAAAACTAATTACCACTGCCGTACCA
GACATTTTCCCATTCTCGTCTTCGAAACAAGCGGTAAAGAGACCAAATAT
TATGACAAAGATCAGGGAACGACAAGGTTGTATGAGAAATCAAAAGAAAA
ACTATGATGTTACTTTCTTTGGTCTGCCCAAAGATAATACTTTAGCAAAA
GAATGGGTCAATCGTTTGAAAACAAAAAGAGAAGACCCTCTCCCGAAGAA
GGTTATTTTATGTGAAAGTCATTTTAGTGCAGAAATGTTTGACAAGTCAG
TGGATCTTCAAAGAAGATTCATGAAAGATAGCAGATAGTTTTGACTAAAA
AGTTTTATCGGACACACGAAAAGGATGATCAAAACGCGGACCAGAACGAA
GAAAAATTTGGGAGCTTCCATCAGAAAAAGAATCGATCGGCACAATCGCA
AACAGATCATGTTCAACCGCCCATCCAGACCAGTGATGTTGGAACTCAAA
CACGCGAAGAAAACGTTACATCAGAGGAACTAAATACCATATTCAACACA
ACAGCACTTGAAACGATGGCTGATTTGCTAGGTTTACCTTCCTTGCCATC
AATCGTTCGAAAGAGGCATGAAGTTAAAGCAACGAAAACTAATTACCACT
GCCGTACCAGACATTTTCCCATTCTCGTCTTCGAAACAAGCGGTAAAGAG
ACCAAATATTATGACAAAGATCAGGGAACGACAAGGTTGTATGAGAAATC
AAAAGAAAAACTATGATGTTACTTTCTTTGGTCTGCCCAAAGATAATACT
TTAGCAAAAGAATGGGTCAATCGTTTGAAAACAAAAAGAGAAGACCCTCT
CCCGAAGAAGGTTATTTTATGTGAAAGTCATTTTAGTGCAGAAATGTTTG
ACAAGTCAGTGGATCTTCAAAGAAGATTCATGAAAGATAGCAGATAGTTT
TGACTAAAAAGTTTTATCGGACACACGAAAAGGATGATCAAAACGCGGAC
CAGAACGAAGAAAAATTTGGGAGCTTCCATCAGAAAAAGAATCGATCGGC
ACAATCGCAAACAGATCATGTTCAACCGCCCATCCAGACCAGTGATGTTG
GAACTCAAACACGCGAAGAAAACGTTACATCAGAGGAACTAAATACCATA
TTCAACACAACAGCACTTGAAACGATGGCTGATTTGCTAGGTTTACCTTC
CTTGCCATCAATCGTTCGAAAGAGGCATGAAGTTAAAGCAACGAAAACTA
ATTACCACTGCCGTACCAGACATTTTCCCATTCTCGTCTTCGAAACAAGC
GGTAAAGAGACCAAATATTATGACAAAGATCAGGGAACGACAAGGTTGTA
TGAGAAATCAAAAGAAAAACTATGATGTTACTTTCTTTGGTCTGCCCAAA
GATAATACTTTAGCAAAAGAATGGGTCAATCGTTTGAAAACAAAAAGAGA
AGACCCTCTCCCGAAGAAGGTTATTTTATGTGAAAGTCATTTTAGTGCAG
AAATGTTTGACAAGTCAGTGGATCTTCAAAGAAGATTCATGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015967XLOC_015967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028208-exon-sc0000670-1575043694:85936..86138TCONS_00028208-exon-sc0000670-1575043694:85936..86138Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1575043694:85608..85732TCONS_00028208-exon-sc0000670-1575043694:85608..85732Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1575043694:84892..85076TCONS_00028208-exon-sc0000670-1575043694:84892..85076Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1575043694:84593..84668TCONS_00028208-exon-sc0000670-1575043694:84593..84668Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1575043694:84371..84406TCONS_00028208-exon-sc0000670-1575043694:84371..84406Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1510915933:85936..86138TCONS_00028208-exon-sc0000670-1510915933:85936..86138Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1510915933:85608..85732TCONS_00028208-exon-sc0000670-1510915933:85608..85732Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1510915933:84892..85076TCONS_00028208-exon-sc0000670-1510915933:84892..85076Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1510915933:84593..84668TCONS_00028208-exon-sc0000670-1510915933:84593..84668Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1510915933:84371..84406TCONS_00028208-exon-sc0000670-1510915933:84371..84406Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1491911889:85936..86138TCONS_00028208-exon-sc0000670-1491911889:85936..86138Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1491911889:85608..85732TCONS_00028208-exon-sc0000670-1491911889:85608..85732Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1491911889:84892..85076TCONS_00028208-exon-sc0000670-1491911889:84892..85076Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1491911889:84593..84668TCONS_00028208-exon-sc0000670-1491911889:84593..84668Clytia hemisphaericaexon
TCONS_00028208-exon-sc0000670-1491911889:84371..84406TCONS_00028208-exon-sc0000670-1491911889:84371..84406Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028208-proteinTCONS_00028208-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:84371..86138 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252534	4.77986e-08	0.116598	0.150513	0.155218	6.64685e-08	1.27786	0	1.74955	1.19981	0.757474	1.64007e-07	0.00308489	5.34226e-06	0	1.24329e-08	6.12559e-08	0.22439	0.886085	9.02266e-08	1.4191e-08	8.69001e-08	0.293352	0	9.7444e-07	0.0132189	0.290042	0.192938	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006612Znf_C2CH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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