TCONS_00028222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028222
Unique NameTCONS_00028222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1193

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028222 ID=TCONS_00028222|Name=TCONS_00028222|organism=Clytia hemisphaerica|type=transcript|length=1193bp
CCACTGCATACGATACGATTCAAAAGCTTTGACACTTTTCATTCTTCTCA
CACTGTCGattcttcatttaatttaatTGTGTCATCATGGAAATCGATAT
GGGTGAACACGCATCTATTCTTTACGGAACTCATTACCCGAACAAAATCT
TTGTCGGATGCCTTCCCGCAAGAaTAACAGCTGCTTCTCTCGGCGAATAT
TTTGGCTGTTTTGGCGAGGTCATCGAGGCAAAGGTCGTATTAGACGATGC
CAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTACCGATG
CCAAAACTGTTTTATCGGCTGGAGATTTTTACATGCTGGGAAAACGCATC
GTTGTTGGACCTGCTGTAAAAAGAGAGTTCAAGGAGCGTGTAGCAGACGA
GGCCGTAAAGATCGTGATGGCGCAGGAAGCGGTCATCGAACACAATCCGC
CAAGGCGTTTTGTTTACCGCCCGTTGAAACAAGAAATAGATGATCTTCCA
ATCCCGCCACAACAAACACCTCAATGCCCTCTTCCAGCGAATAATGGTTC
ATTTTACTATCCATTATTTTTCGATCCAAATTTCGGATTTTTCTACcatt
aaaattgtttttttttattttttgtaatttttttgttcttttacaAGGTT
TGATGTAGTAGGTGTATTTAAAACTTGTATACGTTTTTAATGATGTTTGT
ATGTATATTTTAAGAGTATTTTTATTGTCCTATGGTTCTATATTGTCCTG
TAAATTGTTTAGTCTTACCACGCCCATTTATGTAGATTTACTGACTTTGT
AAGTAGGAATATTTTTATCGATTGATgcaacatacacgttttttataaga
acaaatcatAAAAACACAAGGCTTCAATggttaaaatattttaatataag
ttaagaacatattttaaggcttcacagaaaatttaataaaaatactcaaa
aaatggtgaaaataagaacaatttttagaCTTTAACTCAAATAggtaaga
acatctgaaggcttcaaaaatgtaggatgtccgtataaaaaaacgtgtac
atttaTTGACACATTGcatgtattttatttttgttgtacTTTGTAAATTG
TTTAGTCTTACCACGCCCTCGACCACGCCCATTTATGTagatttattgat
tttgtaggaagtatattttttattgattgatGCAACGAACATT
Run BLAST on NCBI

protein sequence of TCONS_00028222-protein

>TCONS_00028222-protein ID=TCONS_00028222-protein|Name=TCONS_00028222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MEIDMGEHASILYGTHYPNKIFVGCLPARITAASLGEYFGCFGEVIEAKV
VLDDAKKSKRFGFVSFSRATDAKTVLSAGDFYMLGKRIVVGPAVKREFKE
RVADEAVKIVMAQEAVIEHNPPRRFVYRPLKQEIDDLPIPPQQTPQCPLP
ANNGSFYYPLFFDPNFGFFYH
Run BLAST on NCBI

transcript from alignment at sc0000670:151472..154854-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028222 ID=TCONS_00028222|Name=TCONS_00028222|organism=Clytia hemisphaerica|type=transcript|length=3383bp|location=Sequence derived from alignment at sc0000670:151472..154854- (Clytia hemisphaerica)
CCACTGCATACGATACGATTCAAAAGCTTTGACACTTTTCATTCTTCTCA
CACTGTCGATTCTTCATTTAATTTAATTGTGTCATCATGGAAATCGATAT
GGTACGTAAATCATTTTTATTCGGCGTTTCCCACATTTTTGCTTTCGAGG
GATTTTCTGGGTCTTTTAAAAGTCCTTCGAGGCGCTTCTTATTCTACACT
CTTCTGCGTTGATTGCATCGAAATTTTAATGTGTGAAATTAGAGATTTTA
TTTGTTTTTTGGACCTACCTGGAGGTCCTATAAATTAACCTCTGTCCGTC
CGTTCGTCCGTTCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGCTATGTTTTC
TGACTGATTTTTTTCATTTTTCTCCTTGCATTGCTATCTAACTTTCATCA
TCAGGTAGGTCCATTCAGCATCTAGCTTGTTTCTTTTACAGGGTGAACAC
GCATCTATTCTTTACGGAACTCATTACCCGAACAAAATCTTTGTCGGATG
CCTTCCCGCAAGANCTTTTATAGGGTGAACACGCATCTATTCTTTACGGA
ACTCATTACCCGAACAAAATCTTTGTCGGATGCCTTCCCGCAAGAGTAAG
TCAAATAATGCATATTTTTTCTAATTATCCTTTTTGGGGGAAGATAGTCG
GGCCGCATCACAGGAATCGAGAAAAGTGATGAAAGTAATAAAATCAAACC
AAGCCTTATCTTTTTTTTCTTCCTCTCACATTCAGCACCAGACTACCTTA
TACTGAAGCTTTTTTATGAAATTAAAATTTGAGATACCGTTTTTTATTAG
GGAAGGATAAATTTTATTTCGTGTAGCAAAACACTGTTTTTTGAGCCTCT
AGATGGGTTTGTCTTGAAGGCTTCGAAAGTGTTTCAATTAGTGATGTTTG
TCTGGTTTGTAAACTTTTTATTTATTCTTTAGATAACAGCTGCTTCTCTC
GGCGAATATTTTGGCTGTTTTGGCGAGGTCATCGAGGCAAAGGTCGTATT
AGACGATGCCAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCCGTG
CTACCGATGCCAAAACTGTTTTATCGGCTGGAGATTTTTACATGCTGGGA
AAACGCATCGTTGTTGGACCTGCTGTAAAAAGAGAGGTTGCTATGATTTT
TGCTTCGTTGATCTTTCAAATACACTTGAAAAGTCATAAGGGGTAAATTA
CTCTTTTAAAGGCCCTTTACGCTATGTTATGTCAACTAGTTAGTTCTCCT
CCGTGTTTGCCCTTCGAGCATCTGGGTTCTAGTTTGGCTGAAACCAAAAC
ATCAACCGATTTTTTTATATCTAAAATTTCTATGACTGTAATAATGATGA
TGACTATAATTTATAACTTTTTTATGTTATTCAGTTCAAGGAGCGTGTAG
CAGACGAGGCCGTAAAGATCGTGATGGCGCAGGAAGCGGTCATCGAACAC
AATCCGCCAAGGCGTTTTGTTTACCGCCCGTTGAAACAAGAAATAGATGA
TCTTCCAATCCCGCCACAACAAACACCTCAATGCCCTCTTCCAGCGAATA
ATGGTTCATTTTACTATCCATTATTTTTCGATCCAAATTTCGGATTTTTC
TACCATTAAAATTGTTTTTTTTTATTTTTTGTAATTTTTTTGTTCTTTTA
CAAGGTTTGATGTAGTAGGTGTATTTAAAACTTGTATACGTTTTTAATGA
TGTTTGTATGTATATTTTAAGAGTATTTTTATTGTCCTATGGTTCTATAT
TGTCCTGTAAATTGTTTANTTTAATGATGTTTGTATGTATATTTTAAGAG
TATTTTTATTGTCCTATGGTTCTATATTGTCTTGTAAATTGTTTAGGTTT
AGTCTTACCACGCCCATTTATGTAGATTTACTGACTTTGTAAGTAGGAAT
ATTTTTATCGATTGATGCAACATACACGTTTTTTATAAGAACAAATCATA
AAAACACAAGGCTTCAATGGTTAAAATATTTTAATATAAGTTAAGAACAT
ATTTTAAGGCTTCACAGAAAATTTAATAAAAATACTCAAAAAATGGTGAA
AATAAGAACAATTTTTAGACTTTAACTCAAATAGGTAAGAACATCTGAAG
GCTTCAAAAATGTAGGATGTCCGTATAAAAAAACGTGTACATTTATTGAC
ACATTGCATGTATTTTATTTTTGTTGTACTTTGTAAATTGTTTAGTCTTA
CCACGCCCTCGACCACGCCCATTTATGTAGATTTATTGATTTTGTAGGAA
GTATATTTTTTATTGATTGATGCAACGAACATT

Coding sequence (CDS) from alignment at sc0000670:151472..154854-

>TCONS_00028222 ID=TCONS_00028222|Name=TCONS_00028222|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at sc0000670:151472..154854- (Clytia hemisphaerica)
TTCAAGGAGCGTGTAGCAGACGAGGCCGTAAAGATCGTGATGGCGCAGGA
AGCGGTCATCGAACACAATCCGCCAAGGCGTTTTGTTTACCGCCCGTTGA
AACAAGAAATAGATGATCTTCCAATCCCGCCACAACAAACACCTCAATGC
CCTCTTCCAGCGAATAATGGTTCATTTTACTATCCATTATTTTTCGATCC
AAATTTCGGATTTTTCTACCATTAAATAACAGCTGCTTCTCTCGGCGAAT
ATTTTGGCTGTTTTGGCGAGGTCATCGAGGCAAAGGTCGTATTAGACGAT
GCCAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTACCGA
TGCCAAAACTGTTTTATCGGCTGGAGATTTTTACATGCTGGGAAAACGCA
TCGTTGTTGGACCTGCTGTAAAAAGAGAGCTTCCCGCAAGAGGTGAACAC
GCATCTATTCTTTACGGAACTCATTACCCGAACAAAATCTTTGTCGGATG
CATGGAAATCGATATGTTCAAGGAGCGTGTAGCAGACGAGGCCGTAAAGA
TCGTGATGGCGCAGGAAGCGGTCATCGAACACAATCCGCCAAGGCGTTTT
GTTTACCGCCCGTTGAAACAAGAAATAGATGATCTTCCAATCCCGCCACA
ACAAACACCTCAATGCCCTCTTCCAGCGAATAATGGTTCATTTTACTATC
CATTATTTTTCGATCCAAATTTCGGATTTTTCTACCATTAAATAACAGCT
GCTTCTCTCGGCGAATATTTTGGCTGTTTTGGCGAGGTCATCGAGGCAAA
GGTCGTATTAGACGATGCCAAGAAATCGAAACGTTTTGGGTTCGTGTCTT
TCTCCCGTGCTACCGATGCCAAAACTGTTTTATCGGCTGGAGATTTTTAC
ATGCTGGGAAAACGCATCGTTGTTGGACCTGCTGTAAAAAGAGAGCTTCC
CGCAAGAGGTGAACACGCATCTATTCTTTACGGAACTCATTACCCGAACA
AAATCTTTGTCGGATGCATGGAAATCGATATGTTCAAGGAGCGTGTAGCA
GACGAGGCCGTAAAGATCGTGATGGCGCAGGAAGCGGTCATCGAACACAA
TCCGCCAAGGCGTTTTGTTTACCGCCCGTTGAAACAAGAAATAGATGATC
TTCCAATCCCGCCACAACAAACACCTCAATGCCCTCTTCCAGCGAATAAT
GGTTCATTTTACTATCCATTATTTTTCGATCCAAATTTCGGATTTTTCTA
CCATTAAATAACAGCTGCTTCTCTCGGCGAATATTTTGGCTGTTTTGGCG
AGGTCATCGAGGCAAAGGTCGTATTAGACGATGCCAAGAAATCGAAACGT
TTTGGGTTCGTGTCTTTCTCCCGTGCTACCGATGCCAAAACTGTTTTATC
GGCTGGAGATTTTTACATGCTGGGAAAACGCATCGTTGTTGGACCTGCTG
TAAAAAGAGAGCTTCCCGCAAGAGGTGAACACGCATCTATTCTTTACGGA
ACTCATTACCCGAACAAAATCTTTGTCGGATGCATGGAAATCGATATGTT
CAAGGAGCGTGTAGCAGACGAGGCCGTAAAGATCGTGATGGCGCAGGAAG
CGGTCATCGAACACAATCCGCCAAGGCGTTTTGTTTACCGCCCGTTGAAA
CAAGAAATAGATGATCTTCCAATCCCGCCACAACAAACACCTCAATGCCC
TCTTCCAGCGAATAATGGTTCATTTTACTATCCATTATTTTTCGATCCAA
ATTTCGGATTTTTCTACCATTAAATAACAGCTGCTTCTCTCGGCGAATAT
TTTGGCTGTTTTGGCGAGGTCATCGAGGCAAAGGTCGTATTAGACGATGC
CAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTACCGATG
CCAAAACTGTTTTATCGGCTGGAGATTTTTACATGCTGGGAAAACGCATC
GTTGTTGGACCTGCTGTAAAAAGAGAGCTTCCCGCAAGAGGTGAACACGC
ATCTATTCTTTACGGAACTCATTACCCGAACAAAATCTTTGTCGGATGCA
TGGAAATCGATATGTTCAAGGAGCGTGTAGCAGACGAGGCCGTAAAGATC
GTGATGGCGCAGGAAGCGGTCATCGAACACAATCCGCCAAGGCGTTTTGT
TTACCGCCCGTTGAAACAAGAAATAGATGATCTTCCAATCCCGCCACAAC
AAACACCTCAATGCCCTCTTCCAGCGAATAATGGTTCATTTTACTATCCA
TTATTTTTCGATCCAAATTTCGGATTTTTCTACCATTAAATAACAGCTGC
TTCTCTCGGCGAATATTTTGGCTGTTTTGGCGAGGTCATCGAGGCAAAGG
TCGTATTAGACGATGCCAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTC
TCCCGTGCTACCGATGCCAAAACTGTTTTATCGGCTGGAGATTTTTACAT
GCTGGGAAAACGCATCGTTGTTGGACCTGCTGTAAAAAGAGAGCTTCCCG
CAAGAGGTGAACACGCATCTATTCTTTACGGAACTCATTACCCGAACAAA
ATCTTTGTCGGATGCATGGAAATCGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015977XLOC_015977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028222-exon-sc0000670-1575043694:154754..154854TCONS_00028222-exon-sc0000670-1575043694:154754..154854Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1575043694:153254..153313TCONS_00028222-exon-sc0000670-1575043694:153254..153313Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1575043694:153160..153171TCONS_00028222-exon-sc0000670-1575043694:153160..153171Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1575043694:152619..152822TCONS_00028222-exon-sc0000670-1575043694:152619..152822Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1575043694:151992..152370TCONS_00028222-exon-sc0000670-1575043694:151992..152370Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1575043694:151472..151908TCONS_00028222-exon-sc0000670-1575043694:151472..151908Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1510915933:154754..154854TCONS_00028222-exon-sc0000670-1510915933:154754..154854Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1510915933:153254..153313TCONS_00028222-exon-sc0000670-1510915933:153254..153313Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1510915933:153160..153171TCONS_00028222-exon-sc0000670-1510915933:153160..153171Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1510915933:152619..152822TCONS_00028222-exon-sc0000670-1510915933:152619..152822Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1510915933:151992..152370TCONS_00028222-exon-sc0000670-1510915933:151992..152370Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1510915933:151472..151908TCONS_00028222-exon-sc0000670-1510915933:151472..151908Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1491911889:154754..154854TCONS_00028222-exon-sc0000670-1491911889:154754..154854Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1491911889:153254..153313TCONS_00028222-exon-sc0000670-1491911889:153254..153313Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1491911889:153160..153171TCONS_00028222-exon-sc0000670-1491911889:153160..153171Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1491911889:152619..152822TCONS_00028222-exon-sc0000670-1491911889:152619..152822Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1491911889:151992..152370TCONS_00028222-exon-sc0000670-1491911889:151992..152370Clytia hemisphaericaexon
TCONS_00028222-exon-sc0000670-1491911889:151472..151908TCONS_00028222-exon-sc0000670-1491911889:151472..151908Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028222-proteinTCONS_00028222-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:151472..154854 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0351589	0.0653923	0.138824	0.766183	0.489109	6.8137	10.06	10.2456	15.6445	18.2045	9.82176	7.19654	7.10343	1.12073	0.711459	0.582178	0.361615	0.370912	0.160554	0.19275	0.151178	0.22803	0.117882	0.436159	1.44481	0.0695631	0.254148	0.187548	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top