TCONS_00028223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028223
Unique NameTCONS_00028223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028223 ID=TCONS_00028223|Name=TCONS_00028223|organism=Clytia hemisphaerica|type=transcript|length=1483bp
gttaaaattatctttttctttgCACACCTGCATATTTGAACTATTTTTGC
ATCTTGTGGCTCCACACCTcagttttgaaatcaaaaaacaaatatcACAG
CTAGTCTGGATactaaattgaatttttcttttgtagGAGCCAATCAGAAA
CCAGAATGAGATTATATGGACAATACTAACAATAGCTTTAAACCAAATCC
TTTTGTTTTTTACAGTACAGAGGTTTGGAAAGGAACTTGCTCACGTATTT
AAAAACAGAAAATGACATTTTGGTTAAACACTACTCATCACCACTGCATA
CGATACGATTCAAAAGCTTTGACACTTTTCATTCTTCTCACACTGTCGat
tcttcatttaatttaatTGTGTCATCATGGAAATCGATATGGGTGAACAC
GCATCTATTCTTTACGGAACTCATTACCCGAACAAAATCTTTGTCGGATG
CCTTCCCGCAAGAaTAACAGCTGCTTCTCTCGGCGAATATTTTGGCTGTT
TTGGCGAGGTCATCGAGGCAAAGGTCGTATTAGACGATGCCAAGAAATCG
AAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTACCGATGCCAAAACTGT
TTTATCGGCTGGAGATTTTTACATGCTGGGAAAACGCATCGTTGTTGGAC
CTGCTGTAAAAAGAGAGTTCAAGGAGCGTGTAGCAGACGAGGCCGTAAAG
ATCGTGATGGCGCAGGAAGCGGTCATCGAACACAATCCGCCAAGGCGTTT
TGTTTACCGCCCGTTGAAACAAGAAATAGATGATCTTCCAATCCCGCCAC
AACAAACACCTCAATGCCCTCTTCCAGCGAATAATGGTTCATTTTACTAT
CCATTATTTTTCGATCCAAATTTCGGATTTTTCTACcattaaaattgttt
ttttttattttttgtaatttttttgttcttttacaAGGTTTGATGTAGTA
GGTGTATTTAAAACTTGTATACGTTTTTAATGATGTTTGTATGTATATTT
TAAGAGTATTTTTATTGTCCTATGGTTCTATATTGTCCTGTAAATTGTTT
AGTCTTACCACGCCCATTTATGTAGATTTACTGACTTTGTAAGTAGGAAT
ATTTTTATCGATTGATgcaacatacacgttttttataagaacaaatcatA
AAAACACAAGGCTTCAATggttaaaatattttaatataagttaagaacat
attttaaggcttcacagaaaatttaataaaaatactcaaaaaatggtgaa
aataagaacaatttttagaCTTTAACTCAAATAggtaagaacatctgaag
gcttcaaaaatgtaggatgtccgtataaaaaaacgtgtacatttaTTGAC
ACATTGcatgtattttatttttgttgtacTTTGTAAATTGTTTAGTCTTA
CCACGCCCTCGACCACGCCCATTTATGTagatttattgattttgtaggaa
gtatattttttattgattgatGCAACGAACATT
Run BLAST on NCBI

transcript from alignment at sc0000670:151472..155144-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028223 ID=TCONS_00028223|Name=TCONS_00028223|organism=Clytia hemisphaerica|type=transcript|length=3673bp|location=Sequence derived from alignment at sc0000670:151472..155144- (Clytia hemisphaerica)
GTTAAAATTATCTTTTTCTTTGCACACCTGCATATTTGAACTATTTTTGC
ATCTTGTGGCTCCACACCTCAGTTTTGAAATCAAAAAACAAATATCACAG
CTAGTCTGGATACTAAATTGAATTTTTCTTTTGTAGGAGCCAATCAGAAA
CCAGAATGAGATTATATGGACAATACTAACAATAGCTTTAAACCAAATCC
TTTTGTTTTTTACAGTACAGAGGTTTGGAAAGGAACTTGCTCACGTATTT
AAAAACAGAAAATGACATTTTGGTTAAACACTACTCATCACCACTGCATA
CGATACGATTCAAAAGCTTTGACACTTTTCATTCTTCTCACACTGTCGAT
TCTTCATTTAATTTAATTGTGTCATCATGGAAATCGATATGGTACGTAAA
TCATTTTTATTCGGCGTTTCCCACATTTTTGCTTTCGAGGGATTTTCTGG
GTCTTTTAAAAGTCCTTCGAGGCGCTTCTTATTCTACACTCTTCTGCGTT
GATTGCATCGAAATTTTAATGTGTGAAATTAGAGATTTTATTTGTTTTTT
GGACCTACCTGGAGGTCCTATAAATTAACCTCTGTCCGTCCGTTCGTCCG
TTCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAACGCTATGTTTTCTGACTGATTT
TTTTCATTTTTCTCCTTGCATTGCTATCTAACTTTCATCATCAGGTAGGT
CCATTCAGCATCTAGCTTGTTTCTTTTACAGGGTGAACACGCATCTATTC
TTTACGGAACTCATTACCCGAACAAAATCTTTGTCGGATGCCTTCCCGCA
AGANCTTTTATAGGGTGAACACGCATCTATTCTTTACGGAACTCATTACC
CGAACAAAATCTTTGTCGGATGCCTTCCCGCAAGAGTAAGTCAAATAATG
CATATTTTTTCTAATTATCCTTTTTGGGGGAAGATAGTCGGGCCGCATCA
CAGGAATCGAGAAAAGTGATGAAAGTAATAAAATCAAACCAAGCCTTATC
TTTTTTTTCTTCCTCTCACATTCAGCACCAGACTACCTTATACTGAAGCT
TTTTTATGAAATTAAAATTTGAGATACCGTTTTTTATTAGGGAAGGATAA
ATTTTATTTCGTGTAGCAAAACACTGTTTTTTGAGCCTCTAGATGGGTTT
GTCTTGAAGGCTTCGAAAGTGTTTCAATTAGTGATGTTTGTCTGGTTTGT
AAACTTTTTATTTATTCTTTAGATAACAGCTGCTTCTCTCGGCGAATATT
TTGGCTGTTTTGGCGAGGTCATCGAGGCAAAGGTCGTATTAGACGATGCC
AAGAAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTACCGATGC
CAAAACTGTTTTATCGGCTGGAGATTTTTACATGCTGGGAAAACGCATCG
TTGTTGGACCTGCTGTAAAAAGAGAGGTTGCTATGATTTTTGCTTCGTTG
ATCTTTCAAATACACTTGAAAAGTCATAAGGGGTAAATTACTCTTTTAAA
GGCCCTTTACGCTATGTTATGTCAACTAGTTAGTTCTCCTCCGTGTTTGC
CCTTCGAGCATCTGGGTTCTAGTTTGGCTGAAACCAAAACATCAACCGAT
TTTTTTATATCTAAAATTTCTATGACTGTAATAATGATGATGACTATAAT
TTATAACTTTTTTATGTTATTCAGTTCAAGGAGCGTGTAGCAGACGAGGC
CGTAAAGATCGTGATGGCGCAGGAAGCGGTCATCGAACACAATCCGCCAA
GGCGTTTTGTTTACCGCCCGTTGAAACAAGAAATAGATGATCTTCCAATC
CCGCCACAACAAACACCTCAATGCCCTCTTCCAGCGAATAATGGTTCATT
TTACTATCCATTATTTTTCGATCCAAATTTCGGATTTTTCTACCATTAAA
ATTGTTTTTTTTTATTTTTTGTAATTTTTTTGTTCTTTTACAAGGTTTGA
TGTAGTAGGTGTATTTAAAACTTGTATACGTTTTTAATGATGTTTGTATG
TATATTTTAAGAGTATTTTTATTGTCCTATGGTTCTATATTGTCCTGTAA
ATTGTTTANTTTAATGATGTTTGTATGTATATTTTAAGAGTATTTTTATT
GTCCTATGGTTCTATATTGTCTTGTAAATTGTTTAGGTTTAGTCTTACCA
CGCCCATTTATGTAGATTTACTGACTTTGTAAGTAGGAATATTTTTATCG
ATTGATGCAACATACACGTTTTTTATAAGAACAAATCATAAAAACACAAG
GCTTCAATGGTTAAAATATTTTAATATAAGTTAAGAACATATTTTAAGGC
TTCACAGAAAATTTAATAAAAATACTCAAAAAATGGTGAAAATAAGAACA
ATTTTTAGACTTTAACTCAAATAGGTAAGAACATCTGAAGGCTTCAAAAA
TGTAGGATGTCCGTATAAAAAAACGTGTACATTTATTGACACATTGCATG
TATTTTATTTTTGTTGTACTTTGTAAATTGTTTAGTCTTACCACGCCCTC
GACCACGCCCATTTATGTAGATTTATTGATTTTGTAGGAAGTATATTTTT
TATTGATTGATGCAACGAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015977XLOC_015977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028223-exon-sc0000670-1575043694:154754..155144TCONS_00028223-exon-sc0000670-1575043694:154754..155144Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1575043694:153160..153231TCONS_00028223-exon-sc0000670-1575043694:153160..153231Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1575043694:152619..152822TCONS_00028223-exon-sc0000670-1575043694:152619..152822Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1575043694:151992..152370TCONS_00028223-exon-sc0000670-1575043694:151992..152370Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1575043694:151472..151908TCONS_00028223-exon-sc0000670-1575043694:151472..151908Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1510915933:154754..155144TCONS_00028223-exon-sc0000670-1510915933:154754..155144Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1510915933:153160..153231TCONS_00028223-exon-sc0000670-1510915933:153160..153231Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1510915933:152619..152822TCONS_00028223-exon-sc0000670-1510915933:152619..152822Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1510915933:151992..152370TCONS_00028223-exon-sc0000670-1510915933:151992..152370Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1510915933:151472..151908TCONS_00028223-exon-sc0000670-1510915933:151472..151908Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1491911889:154754..155144TCONS_00028223-exon-sc0000670-1491911889:154754..155144Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1491911889:153160..153231TCONS_00028223-exon-sc0000670-1491911889:153160..153231Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1491911889:152619..152822TCONS_00028223-exon-sc0000670-1491911889:152619..152822Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1491911889:151992..152370TCONS_00028223-exon-sc0000670-1491911889:151992..152370Clytia hemisphaericaexon
TCONS_00028223-exon-sc0000670-1491911889:151472..151908TCONS_00028223-exon-sc0000670-1491911889:151472..151908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:151472..155144 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.181771	0.163137	0.188639	0	0	0	0.135578	0	0.0869236	0	0	0	0	0	0	0.136085	0	0	0	0	0	0	0	0	0	0.0483097
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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