TCONS_00028260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028260
Unique NameTCONS_00028260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028260 ID=TCONS_00028260|Name=TCONS_00028260|organism=Clytia hemisphaerica|type=transcript|length=302bp
ATAAAGACTGGCGCAAAATGGCGCTGAATCGTTGACCTTTGAAgtaaagt
ttttctgaaagaaaagaaaacaagctttccattcatgtatgtTTATGAAA
GGTTAGAGTTCTCTATGATGTTTGACGGAACACTGAAGACAAGTTTTCGT
TGTACAGGCTAAAGTGGAAATCCCGGGGCTGGTAAACCCTAGTCTGTGTA
ATGACCTATCTATTGTGAGTCcctggtgaaaatttcagggTCTGAAGTGA
AATAGTCAGCTTGCGACAAGGTTTCAAAGTCAAGCCGACGTTCCGATTTT
GC
Run BLAST on NCBI

transcript from alignment at sc0000671:106059..106360

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028260 ID=TCONS_00028260|Name=TCONS_00028260|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at sc0000671:106059..106360 (Clytia hemisphaerica)
GCAAAATCGGAACGTCGGCTTGACTTTGAAACCTTGTCGCAAGCTGACTA
TTTCACTTCAGAccctgaaattttcaccaggGACTCACAATAGATAGGTC
ATTACACAGACTAGGGTTTACCAGCCCCGGGATTTCCACTTTAGCCTGTA
CAACGAAAACTTGTCTTCAGTGTTCCGTCAAACATCATAGAGAACTCTAA
CCTTTCATAAacatacatgaatggaaagcttgttttcttttctttcagaa
aaactttacTTCAAAGGTCAACGATTCAGCGCCATTTTGCGCCAGTCTTT
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016008XLOC_016008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028260-exon-sc0000671-1491911889:106059..106360TCONS_00028260-exon-sc0000671-1491911889:106059..106360Clytia hemisphaericaexon
TCONS_00028260-exon-sc0000671-1510915933:106059..106360TCONS_00028260-exon-sc0000671-1510915933:106059..106360Clytia hemisphaericaexon
TCONS_00028260-exon-sc0000671-1575043694:106059..106360TCONS_00028260-exon-sc0000671-1575043694:106059..106360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000671supercontigsc0000671:106059..106360 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14317	0	0	0	0	0.812147	0.48991	0	0	0.397747	0	0.253783	2.02744	0	0.216377	0	0.572118	0.293201	3.24059	1.69552	0.368429	0	0	0.397218	1.6365	0.730269	1.04501	0.557633	1.69178	1.29274
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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