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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028269 ID=TCONS_00028269|Name=TCONS_00028269|organism=Clytia hemisphaerica|type=transcript|length=2834bpRun BLAST on NCBI protein sequence of TCONS_00028269-protein >TCONS_00028269-protein ID=TCONS_00028269-protein|Name=TCONS_00028269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=663bp SGFVNIRAVPEEMELAREEKCEFLPFVTPKEVVVKGDRIAAMEFFKTEQLRun BLAST on NCBI transcript from alignment at sc0000672:29910..50149+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028269 ID=TCONS_00028269|Name=TCONS_00028269|organism=Clytia hemisphaerica|type=transcript|length=20240bp|location=Sequence derived from alignment at sc0000672:29910..50149+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000672:29910..50149+ >TCONS_00028269 ID=TCONS_00028269|Name=TCONS_00028269|organism=Clytia hemisphaerica|type=CDS|length=23904bp|location=Sequence derived from alignment at sc0000672:29910..50149+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028269 vs. Swiss-Prot (Human)
Match: DPYD (Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo sapiens GN=DPYD PE=1 SV=2) HSP 1 Score: 939.102 bits (2426), Expect = 0.000e+0 Identity = 440/661 (66.57%), Postives = 539/661 (81.54%), Query Frame = 1
Query: 4 GFVNIRAVPEEMELAREEKCEFLPFVTPKEVVVKGDRIAAMEFFKTEQLDDGTWIEDEDQTLKIKANFIISAFGSTLAQKDVIEALSPLKMNRWGLPDVNQDTMGSSEADVFCGGDIGGQANTTVESVNDGKHASWSMHRYLQQLAGVSIPPEPKLPLFCTPIDEVDLSVEMCGLKFPNPFGLASAPPTTSAPMMRRAYEAGWGFELTKTFVLDKDYIVNVSPRIVRGSTSGHLYGPGQGAFLNIELISEKSAEYWCKSITELVTDFPDKVLIASIMCTYTKEDWQELTIMAQDAGAHALELNLSCPHGMGEKGMGLACGQDSMLVRNICKWVREVATIPFFAKLTPNVTNIVDIARAAKEGGADGVTATNTVSGLMHLKGDASPWPGVGKAKRTTYGGVSGNAIRPIALRAVSAIARALPGFPILATGGIDSADAALQFLHAGASVVQICSSVQNQDFTVIQDYITGLQTLLYMDACDAFKGWNGQSEPTVRHQKGKPVPVATKVNEVIGKGLPHFGEFKKQRDAAMSEHKKNADLHSQENMPEKVRPPTEPQRNMTTIQDMIGRSLKHIGAYNDLTNKEQVVACIDDEMCINCGKCYMTCNDSGYQAITFDPDTHIPHVTEDCTGCTLCVSVCPIIDCIEMVPKQIPHVINRGIPLKIN 1986
GFVNIRAVPEEMELA+EEKCEFLPF++P++V+VKG RI AM+F +TEQ + G W EDEDQ + +KA+ +ISAFGS L+ V EALSP+K NRWGLP+V+ +TM +SEA VF GGD+ G ANTTVESVNDGK ASW +H+Y+Q G S+ +P+LPLF TPID VD+SVEM GLKF NPFGLASA P TS M+RRA+EAGWGF LTKTF LDKD + NVSPRI+RG+TSG +YGPGQ +FLNIELISEK+A YWC+S+TEL DFPD ++IASIMC+Y K DW EL ++D+GA ALELNLSCPHGMGE+GMGLACGQD LVRNIC+WVR+ IPFFAKLTPNVT+IV IARAAKEGGA+GVTATNTVSGLM LK D +PWP VG AKRTTYGGVSG AIRPIALRAV++IARALPGFPILATGGIDSA++ LQFLH+GASV+Q+CS++QNQDFTVI+DY TGL+ LLY+ + + + W+GQS TV HQKGKPVP ++ E++ K LP FG + +QR ++E+K + P K R P+R + TI+D+IG++L+++G + +L+N EQVVA ID+EMCINCGKCYMTCNDSGYQAI FDP+TH+P +T+ CTGCTLC+SVCPI+DCI+MV + P+ RG+PL +N
Sbjct: 366 GFVNIRAVPEEMELAKEEKCEFLPFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSDPKVKEALSPIKFNRWGLPEVDPETMQTSEAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYVQSQYGASVSAKPELPLFYTPIDLVDISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGANGVTATNTVSGLMGLKSDGTPWPAVGIAKRTTYGGVSGTAIRPIALRAVTSIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYLKSIEELQDWDGQSPATVSHQKGKPVP---RIAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVAFSPLK-RNCFIPKRPIPTIKDVIGKALQYLGTFGELSNVEQVVAMIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTITDTCTGCTLCLSVCPIVDCIKMVSRTTPYEPKRGVPLSVN 1022 The following BLAST results are available for this feature:
BLAST of TCONS_00028269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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