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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028277 ID=TCONS_00028277|Name=TCONS_00028277|organism=Clytia hemisphaerica|type=transcript|length=1157bpRun BLAST on NCBI protein sequence of TCONS_00028277-protein >TCONS_00028277-protein ID=TCONS_00028277-protein|Name=TCONS_00028277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp MRYLFCFYSVAQYSNENGMTIEELAKVFSYLVLRPREKDGKIFTENLDIQRun BLAST on NCBI transcript from alignment at sc0000672:116098..128058+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028277 ID=TCONS_00028277|Name=TCONS_00028277|organism=Clytia hemisphaerica|type=transcript|length=11961bp|location=Sequence derived from alignment at sc0000672:116098..128058+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000672:116098..128058+ >TCONS_00028277 ID=TCONS_00028277|Name=TCONS_00028277|organism=Clytia hemisphaerica|type=CDS|length=9450bp|location=Sequence derived from alignment at sc0000672:116098..128058+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028277 vs. Swiss-Prot (Human)
Match: P85A (Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Homo sapiens GN=PIK3R1 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 5.974e-21 Identity = 80/300 (26.67%), Postives = 148/300 (49.33%), Query Frame = 3
Query: 57 LLKSKKINKRPGRLFEVMRYLF-CFYSVAQYSNENGMTIEELAKVFSYLVLRPREKDGKIFTENLDIQILAFIRMVRACESHFGA---------TSLAED-------FDESKWLWPEATRKDVTMRLSGTPDGSFCIR-QSERCRGEWTLTVRKEGRERLIRIIQRNQNGAPCFGFREELLNFGSLEDLVLHFRDNSLEDYNSKLNIKLLHPCGKPDQLNITEGQQDMLVDQARYEELVEKLN--HIKF---------MXXXXXXXXXXXXXCKTLVESQTDVVNFLEEQMELAERIKKE 869
L++S I P + + ++YL F+ ++Q S++N + L+++FS ++ R TENL I+++ + E T++A + +++W W + +R++V +L T DG+F +R S + G++TLT+RK G +LI+I R+ +GF + L F S+ +L+ H+R+ SL YN KL++KLL+P K QQD +V + E + +KL+ + +F + + ++ +T +E+ + + EEQ + ER KE
Sbjct: 226 LIRSPSI---PHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSD-NTENL-IKVIEILISTEWNERQPAPALPPKPPKPTTVANNGMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGK----YGFSDPL-TFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK--------YQQDQVVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKE 507 The following BLAST results are available for this feature:
BLAST of TCONS_00028277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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