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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028297 ID=TCONS_00028297|Name=TCONS_00028297|organism=Clytia hemisphaerica|type=transcript|length=529bp
AGTCATTTCGCTGTCGCTCTACCAAAGCACCAGTGACGTACCGATGTGTT
GAAGCTCACAGCCAATCAGATCTTTCTACATTAAGACAAgGAACAAAACG
TGGTAATTTTTGTTATGGTCTTGACGGTAAAGTTGGTACAGTGGATGATT
ATATGACAGATGTACCAATAAACGTCGACTGTGATCCACGTGCTTCATGC
GATCAATCAGTAGATAAAGGTTCATGCAATAGACAGTTTCCATCCATGAA
AAGCATCGTGGATGCTGGAAGTAACCCAAGACAACCGTTTTGTCCTGCAT
ACAGAGTCCTACCACAGATATGAAAGTCATCAACATGGAAGAGATAGCTT
GTTGAGGAATTGATCAAATTGGAACACTTATTGTAAAATTGGAAGACTAA
AGATTTAATGATTTCAAAATTGCTATCAATGGATGTGCCTCCCGAATTGA
ATATGTCATTAATTATTTGattccaaaaattaaattttgactAATATTTT
AAAGAGTAAATTTAACAGAATTTAACCAG Run BLAST on NCBI protein sequence of TCONS_00028297-protein >TCONS_00028297-protein ID=TCONS_00028297-protein|Name=TCONS_00028297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
SFRCRSTKAPVTYRCVEAHSQSDLSTLRQGTKRGNFCYGLDGKVGTVDDY
MTDVPINVDCDPRASCDQSVDKGSCNRQFPSMKSIVDAGSNPRQPFCPAY
RVLPQI Run BLAST on NCBI transcript from alignment at sc0000673:148741..150385+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028297 ID=TCONS_00028297|Name=TCONS_00028297|organism=Clytia hemisphaerica|type=transcript|length=1645bp|location=Sequence derived from alignment at sc0000673:148741..150385+ (Clytia hemisphaerica)
AGTCATTTCGCTGTCGCTCTACCAAAGCACCAGTGACGTACCGATGTGTT
GAAGCTCACAGCCAATCAGATCTTTCTACATTAAGACAAggtaagaaaaa
agaaagaaaggagCAAAATAGAACATTATTTTGTAGTCACTTTCTAAAAG
GTATTTTACTATTTTCCTGAAACCGCAGAAATCAATATAAAATGTTTGTC
CTGGTATAATAGGTTTACACTCTTTCGGGCTTTCGTGACTTTTTTGAGAG
AGAGGAACCCTAAATTCTTACGACCAAAAAGTACTCCTTACTATAAATTT
TTGGGACAATAAGCTCTTTTCTATTCTTCCAGGAACAAAACGTGGTAATT
TTTGTTATGGTCTTGACGGTAAAGTTGGTACAGTGGATGATTATATGACA
GATGTACCAATAAACGTCGACTGTGATCCACGTGCTTCATGCGATCAATC
AGTAGATAAAGGTTCATGCAATAGACAGTTTCCATCCATGAAAAGCATCG
TGGTAAGTGTTAAGTAAGACATGATTTTCCtaaacgtcgagtaaagctct
gattggctgagacaagaaaagattacctcatactttGGACATGTTTGGTA
AAAATAAGTTTAGGTAAGcattttttagccaatcagagctttactcgacg
tGTTTTCGTGagttttttacatgaatctggCAATAGGAAATTTGTATAAT
TAATCAAACACTTTCGCAAAACCCCTGTAATCTTTTTTAAAGTGCTTAAA
AGTTTCACCAAGTTTGTTTGCTTTTAGAGAGGACATTGGATGGGGTCTCA
TTGGGCAAAAAAAGGTACGGGgagtgccgctggtcagggtacctttttta
ccTCAATGAGtccccaggtagggtcgcaaaaacaccaaaatagaaaaata
agtcCCTCATAGGGGGAATTCCAGAAGAAagtggaaaattttgagaacat
tttggaatttcagtcccattcagggtcacttttttcaaataaacgagtcc
cacgtagggtccatttttcgaatttcAGTGGCACATTCCCGTCGGGTGGC
AAGGGTAATTACTGCTTTATAGGGTAACCGATTTACTCAACTTTGTATCT
CTGTTGCACGTTCTTTGATTTAGGAATAAGTGTATAAAGAAATAAGGCTT
CGAgaataaaaaatctaaaaagattgaaagaacattttaaggctttacgg
gCTCTAGCACAAAATGTTCATTCACAAAATgccgaaaaaagaatattttg
agtACACTTTTAAGCTTAAAACCAAAGGATTAAGAACACTGGAAGGGTTT
GAAATAtatttgacgttcttataaaaaagaagttaTGTAGTTTAGTTGAT
gacttttcaattttgttttttctcagGATGCTGGAAGTAACCCAAGACAA
CCGTTTTGTCCTGCATACAGAGTCCTACCACAGATATGAAAGTCATCAAC
ATGGAAGAGATAGCTTGTTGAGGAATTGATCAAATTGGAACACTTATTGT
AAAATTGGAAGACTAAAGATTTAATGATTTCAAAATTGCTATCAATGGAT
GTGCCTCCCGAATTGAATATGTCATTAATTATTTGattccaaaaattaaa
ttttgactAATATTTTAAAGAGTAAATTTAACAGAATTTAACCAG Coding sequence (CDS) from alignment at sc0000673:148741..150385+ >TCONS_00028297 ID=TCONS_00028297|Name=TCONS_00028297|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000673:148741..150385+ (Clytia hemisphaerica)
TCATTTCGCTGTCGCTCTACCAAAGCACCAGTGACGTACCGATGTGTTGA
AGCTCACAGCCAATCAGATCTTTCTACATTAAGACAAgGAACAAAACGTG
GTAATTTTTGTTATGGTCTTGACGGTAAAGTTGGTACAGTGGATGATTAT
ATGACAGATGTACCAATAAACGTCGACTGTGATCCACGTGCTTCATGCGA
TCAATCAGTAGATAAAGGTTCATGCAATAGACAGTTTCCATCCATGAAAA
GCATCGTGGATGCTGGAAGTAACCCAAGACAACCGTTTTGTCCTGCATAC
AGAGTCCTACCACAGATATGATCATTTCGCTGTCGCTCTACCAAAGCACC
AGTGACGTACCGATGTGTTGAAGCTCACAGCCAATCAGATCTTTCTACAT
TAAGACAAgGAACAAAACGTGGTAATTTTTGTTATGGTCTTGACGGTAAA
GTTGGTACAGTGGATGATTATATGACAGATGTACCAATAAACGTCGACTG
TGATCCACGTGCTTCATGCGATCAATCAGTAGATAAAGGTTCATGCAATA
GACAGTTTCCATCCATGAAAAGCATCGTGGATGCTGGAAGTAACCCAAGA
CAACCGTTTTGTCCTGCATACAGAGTCCTACCACAGATATGATCATTTCG
CTGTCGCTCTACCAAAGCACCAGTGACGTACCGATGTGTTGAAGCTCACA
GCCAATCAGATCTTTCTACATTAAGACAAgGAACAAAACGTGGTAATTTT
TGTTATGGTCTTGACGGTAAAGTTGGTACAGTGGATGATTATATGACAGA
TGTACCAATAAACGTCGACTGTGATCCACGTGCTTCATGCGATCAATCAG
TAGATAAAGGTTCATGCAATAGACAGTTTCCATCCATGAAAAGCATCGTG
GATGCTGGAAGTAACCCAAGACAACCGTTTTGTCCTGCATACAGAGTCCT
ACCACAGATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028297-exon-sc0000673-1491911889:148741..148830 | TCONS_00028297-exon-sc0000673-1491911889:148741..148830 | Clytia hemisphaerica | exon |
| TCONS_00028297-exon-sc0000673-1510915933:148741..148830 | TCONS_00028297-exon-sc0000673-1510915933:148741..148830 | Clytia hemisphaerica | exon |
| TCONS_00028297-exon-sc0000673-1575043694:148741..148830 | TCONS_00028297-exon-sc0000673-1575043694:148741..148830 | Clytia hemisphaerica | exon |
| TCONS_00028297-exon-sc0000673-1491911889:149073..149242 | TCONS_00028297-exon-sc0000673-1491911889:149073..149242 | Clytia hemisphaerica | exon |
| TCONS_00028297-exon-sc0000673-1510915933:149073..149242 | TCONS_00028297-exon-sc0000673-1510915933:149073..149242 | Clytia hemisphaerica | exon |
| TCONS_00028297-exon-sc0000673-1575043694:149073..149242 | TCONS_00028297-exon-sc0000673-1575043694:149073..149242 | Clytia hemisphaerica | exon |
| TCONS_00028297-exon-sc0000673-1491911889:150117..150385 | TCONS_00028297-exon-sc0000673-1491911889:150117..150385 | Clytia hemisphaerica | exon |
| TCONS_00028297-exon-sc0000673-1510915933:150117..150385 | TCONS_00028297-exon-sc0000673-1510915933:150117..150385 | Clytia hemisphaerica | exon |
| TCONS_00028297-exon-sc0000673-1575043694:150117..150385 | TCONS_00028297-exon-sc0000673-1575043694:150117..150385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000673 | supercontig | sc0000673:148741..150385 + |
Blast
The following BLAST results are available for this feature:
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