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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028302 ID=TCONS_00028302|Name=TCONS_00028302|organism=Clytia hemisphaerica|type=transcript|length=619bp
GCTGttttgaaacatttgaaaaGATGAAGACATTATCAATTCTTTTGATC
GTTGGCTTTGCCACATTCGCAGTACTTGCCCGACCTGCCAAACCCGCTGT
ACCTAAAAGAATTCAAAAGGAGCTTGAGAAGGGAATCGTCAAAGAATTAT
CCAAAGAAGTTGTGAAAAaattaaaagaaaaagcTCAGCATGACGACGAA
GACGATGATGATGCAGTATTGGAAGCTGAAACAGACGACGAAGACTTTCA
TGACGAAATTCTTGATCGCCAATTGGACGCAGATGCAAAGCCTCTTTTCT
TTAGATCGATATGGCGCAGCATCAAGAGTGCTTTAGGTTGAGTTGAATCG
AATAAAATTTATTCTCTTGTATTTAATCAAATAGAAATACTCGTGCAACA
AtcgaaaatgaaataaattataGCTAAGCAGGTCAGGATATTTAATCCCA
TAGATGGGTGCATCTCACCTAAGGGATGGCAACCTGTTTCCTGGATTGGT
GACGATTTGGATATGAATATTTGTATAATGTTGAAATAATTTAACGAGAA
TAGAAACAAGAAGCTagtaaaatcttcaaatattcAACTTGTACTTCTTT
TTGAATTTAACCTTTCCCG Run BLAST on NCBI transcript from alignment at sc0000673:162457..172107+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028302 ID=TCONS_00028302|Name=TCONS_00028302|organism=Clytia hemisphaerica|type=transcript|length=9651bp|location=Sequence derived from alignment at sc0000673:162457..172107+ (Clytia hemisphaerica)
GCTGttttgaaacatttgaaaaGATGAAGACATTATCAATTCTTTTGATC
GTTGGCTTTGCCACATTCGCAGTACTTGGTAAGCTCGCAATTTTACTTTG
CATCTTCTATAatttattatgaaaaaaactgagaaaaacTTGAAGGGGCG
GACAATATAATCACGAAGAAAGTTTATTAGCCCTACCCCAGGCAAAGCTA
CTAGAAAAAGCGTCCCCAGGTACTCTCAAGACACCCCCTCTGGAATGTTC
GTGATAGAGAGTTAGCCTGAAAACCATCCGTGATTCTCAAAACATAGATG
TGCAGGATCCCAAAAACAGTTAAAGACCTTGTTCACCGGCAAGGTGGGGG
TAATTGCCCCATATTGCCTGGACTATTAAGATAATCAAAGCAGGAATGTG
GTCAAGTTTTTGTTATCAAAGTCTTCCTTGACCAATTAAAAAGATTCGCT
TAGAGATCTCAATAATGATTTAATTGACTATTATAGTACATTTTCCTTTT
TAGCCCGACCTGCCAAACCCGCTGTACCTAAAAGAATTCAAAAGGAGCTT
GAGAAGGGAATCGTCAAAGAATTATCCAAAGAAGTTGTGAAAAGTAAGTC
TTTATTAAACTGTTTCTTAATGGAAGAAAAGTTGGACTGAATTTTAACCA
TAACATGTAAGCAAACATCTCTAACACTGCCTTATCAAGAGCACTTGCTA
AAGAATTTGACGATTTCGTCGATTATATTCAGCAAACCTTAAATATACAG
TTGACGTTCTCTAATTCAAGGTTCTACTTTTCCATATGCATCATTATTCA
ATCATAATATTGAAAGTTTGacaggcgagaccaatttaatttgggcccga
ccgaccctatttttgctaaaatcaaaaaaataataatattgaatttccac
tacaatatattttacacactagttatttgtaagaaagatttgtaagaaaa
tttgaataaagctgaaaattaattcaagaaattgaaaaatttagaaaatc
cagCATTAAGATACACACATACACTAAGATTTAATCAtgatcttcatcaa
agataaaaaaagtgaattcttgaaccagatattttttggaaaacattttc
ggtactttaaCAACCCtgatgaatgaaaaatttatttttattttaccgac
cgacagacccatattttgctaacgatctgcccgtagaacaacaaattaaa
ttggtctcgccacaagaaactctcgtaaacgacgctctactattccaTAC
GCTCCctcattcgatgaaaatccctttgaaaattgaatcagagagcgtca
actgtagcttaaaatgtaaaaaatcatGTTGAAGTAACAATATAATATTC
TCTTTcagaattaaaagaaaaagcTCAGCATGACGACGAAGACGATGATG
ATGCAGTATTGGGTAAGATCTATTTTAGATNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttat
aaaaaaaacgtttagaaaccaaaatttcatgctcttgaaataatctttca
tattcaagacttcgtgagcaaaaaaaacatctatctcattaaaaaattaa
gtaatttggctaagaacattgatgtatgcttattaaatagtgattcttat
agataaacatgcgttttttgagccaacaaaatttttttgaaaaaatctgc
ttgagccatcttttacctatgatggtaccctactttcatacaaaaaatca
gaaaaaaattaatgatccaatttttcagaaagtctaaaaaaccagttttt
tagccgttttttggcccaaatttgccccaaaattttttttttcgaaaatc
gggctccgtcacattttggccaccaccattttgNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgttgtaccaaaaatcaaaagattcctatgattcaatc
ctgagaaaagttggtaacagacgaacgaacgaacgaacggacgaacggac
ggacggacgaacaaacccaggttaatttataggacctccaccggggtagg
tccaaaaagctctTTGTTCAGCTAGGGAAAACGATCCTTCCATCGTACGG
ACAAAATTGTCTGCTAATGGCTAAAATTAAAGAACTAAACGAGTCATTGT
TACttattacttttttaaattaaactttagtggcttcaaattattgatag
gcccaattgtaggtCCCTAGATATtcgcctcgttttggcgaaaaactcgt
ccctaggccccaaaaatcaaaatttttgaaaaatgaaaaatatgccCCAG
ATATTtgcccaaggaacaagtgtgccaaatttcagccaaatccgacaatt
tttgcagtttccaggctgccccaaagttttagcctggttttggcaaaaaa
atcgtccccaggccccaaaaatcaaaatttttgaaaaatgaaaaaacacc
cccagatattcacccaaggaacaaatgtgccaaatttctgccaaatctga
caatttttgaagtctccaatattttgggacatacacacacacagacattc
ttAGATTCTAGCTTAACTGAAGTTATGAGAATAGGAGAAataaactacat
aagaacatacATAGGCTTTGATGACcgaaatgctaagaacaagttaagaa
cattttaagggctTTGTTGATTCTAAAACACCTAATTCCTTGGTTAAGTT
GACATAAATACTCACAAActggttaaaataagaacatgttaagaacattt
ttcagcTTAAATCTCAGAAAGTTGGTTAAGTTAAAGTCCTTTTTTAGATG
TTTGTTAATGGAAAATAAATTAGATCGAAAAAAGAGGTTGAAATTCAATC
AAGACCTATAACGAGGAAACCGTATGAACAAAGTCGTTCCATAAACAATC
TTGTCTTCTCTTTCAGAAGCTGAAACAGACGACGAAGACTTTGATGACGA
AATTCTAGATCGCCAATTGGACGCAGATGCAAAGCCTCTCTTCTTTGGAT
CGATCCTTTCGTCTATATTTGGTTGAATTGAATCGAATTTAACATAATTT
ATTCCTCTGTATTTTAATAAAGAGGTTACATGTAGCAAAAGAggataaaa
taaattttctaagCAGGCCCCGGTAATCTATAGATACAAACATCATCTCA
CCTAAGGGATGGCAACCTGTTTCCTGGACTGACGAGGACTTGGATATGAA
TATTTATCTTATGTTGAAATAATTTAACGAACGtaaatataaacaaagaa
actagaaaaaaacttttacttgtactttttcctgtgaaaatttttaacac
gtaaaatttttttgacaattgtgaaaattttcaacagtaCCAAAGCTTGT
AACTTGAGAGTTAGACAATAGTTTTGTTAGAATAGGTATTTTTATACTCC
TTTGAAAGCATTCTCTTTAACCAACTTCGAGATAGCCCATTACCTAGGAA
AAACCTCCATATAGGAAAGAATTGGCAAATTAGCCCAGCGGTAAACTAGC
CGATAGTGAAGAAGAATTTGATTTGAGAGCAAAGTCTTAATAGTTGCATC
TTTTTTTCACCATCCATAAAGAAAATTTCTCATGTCTCAAAGAAAATAAT
CggcttaaaaaaacagttcaACTTGTTGTGACTGGCCTGAATTTTTGGTG
ACGATAAAAAGCAGTCATGTAGGTCCAACTTGCAAAAGGCAATCGGTTGC
CTACTTCACTGTCTTCTTCTTTAGTTCTCTTTCCAAGAAACGTCATTTCT
CTTCAACCAAATCCAGTGACTTGCTTTCTCGGTTGCCTCTTCATTCTTTT
ATCGACTTGTTGATCATGTGTTTAAGGAGGCCGATGTTTATGAGCCACTT
CTTCAACCTATTGCCGACAAAACTTCCGCAGCTAACTTCTACTGGGTGAT
GAGTTGCGTTTCTCCCTGCATCTTCGCACTTCTCTAGTACTAATTTTagt
acgcatgcgtgttacaatgcaggattctttagaagAACAGACTGAGTATA
ATAAAGTATAAGTTGCATCCATAGTATTTGCGTCGACGGAGAAAATCTTT
GCTTTTTAACCCACTCGTTCAGCTTAACTGGCTATCTTGGTGTAAACTAC
TGCAACCTCTTTTCCGCCTTTCCCAAAGTTTAgagtacacacttttttta
taagaacatactttataagaatattcatgatgaaaatagccaaaaagaTT
TTGAGTATTACCAACCTAAGAATGTAATTTTTAGAGCATCTTAAACTCaa
aattgccaattattcccCAGTTAAGCTAAATTCAAGTTCACAAAAATGCT
TTAAATTTGGATTAAATTTAGATTcttcctaacctaagaataccgtaaga
atattttagggtgattttcgccaaaatgttaagaatatccatgatggaat
gaaaaaaacaccattcttaaaataaaaaccgTGACAGTGCTTAATTGGAA
TTCTTGTTGACAGGAAGATTGACATAAATAATGCGATTTTTGATCATAGA
AAATTTTATTGTACTTTTAGTACGTTCTAATTGTGTAAAAATTGTGCACA
AAGGCGTGCAAGCACAACtgtagtttaggggtcaaaaatggatcTAAATC
TCAGACCTAAAAAATTGGCACccgtttgtgtattttacagaccagaatag
attCCCAGGATTAAatgaatttgacattttttctgCACTATTTGACCGAG
TTCACTCATTATCTAAGTGGGACTTAAAAGTTTTCACCAGGTTTTTCACC
GGGAGAATCTGATCGGGTGGTCACTGATAAAAAGGTGTATAGGCGTAAAA
GGGATATCATATCCTCGTTCTGCTCTAAAGCAGGCGTCTTCAAATTGAAT
TCTATGCTTCTTCAAAAACAGCAAAGATTCTTTGGACATCACCATAGAAT
TGACAGAGTGAAGGCTGAGATCTTCAANATTCATAGAGGTATCAACCAAG
ATAATATTGAACAGGGAAATTCATAGAGGTATCAACTAAGATAATATTGA
ACAGGAAAATTCATAGAGGTAATAACACTAAGATAATTGAACAGGAAATT
TCATACGCAGAAAGGACAAAAATCGCCTGCTATATTAGTATCAAAGAAGC
TTGACCAAACAAGGGCCAGGTGTTCGAGTATAGGACTCTTTCTAAAGTTT
TCGTATTGTTGGCAACCCAACAGAAAAGAAAATTACGAATATGAAACGAT
CTTATGGGCGCCTTctttgcccggggggggggCAAGATGGGTTACGGGGA
TGCTCCGCTGGTCAGGGTACCTTTTTTAACGTCcacgagtcccaggtagg
gtcgctaaaacaccaaaatagaaaaatcagtctcccgtagggtgcctatt
tttggaaattttggggtaaagtagaaaatttgacaacattttgaaatttt
agtaacattcagggtcacttttttcgcaaatttcgagtcccacgtagggt
ccatttttcgaacctccgcggagcacccccgtcggtcgacaagggtagtg
gGGGACCGCGGGCTTCTTTGGACTTTCGAAATCACATTAGGATCTGTTGC
AAAATTAAGGTACATATCTGATGGACAAATTGAGggtattgtattgtatc
gtATTGTTTCTTTATTTCACGTTGGCTTTAAGAATTAACAGCTGGGGTTA
AGAAAATTATAATGAAATAACANCTATTTCACGTTggctttaaaaaataa
tagctGGGGTTAAGAAAATTACAATGAAATAACAAATTCTAATAAACACC
AACCCCTAATAGATTTTTAATTACGGCATAACCTGCAGTTGCagggaatt
tcattttcttttgtgaattacttaagtaatttttcaaaatcttcagaAGA
AGAACTCCCACGTGAAACTTGgatttcgttttttttagaGATTTGAAGAC
CTCATGTATAGAGCAATTCTTCCTTATAAACTTTAAGCACCTTCCACCTT
TCCAAAGGCTTTTTAAATGCCTCTCGTATGCAAAACAAAATTAGACTGAA
ATATTGCTTTGCCTGGCGTCCACCTGGTTAAGTAGAATTTTCATGTCGGG
TGGGTAAAAATGCAACGATTTTTGTAACAGACCTCTTAACCCATTCCGTG
CCCATGTCAAGTTTATGTGACATtgctaaatgtttttttttaatcaattg
aGCAGCAGCACAAAAAAAAACTGGGCAAAAATCTATAAGTCATGTCCAGT
ATATTTGACATTGGGCCTGGCGGCTAACAACGGGTGAGAATAAATATACA
CGCCATCCGGCTgctcaaaatacttttttcattttctcccgCCGAAAACA
ACTGCATCGCctcgaaaatttttgtaaattttctttttgccatCCCCCCC
TGTGCAAGGAAAAGGTTAAGGGTTTCAAAATACATAAAATCTAATTCAGC
AcacatccaaaaaaaaaatccgtcTATTTTATCTCCAACATGCCTTAATT
TTAAGTAAAGTTGTCCAAATTACGGTTACAATATTGTCCTTGATTTCAGC
TATGAGCCCCCCTAAAAACCCAAATGGCTAAAGTCTGGCGGAAATACCTG
CCATCCAAAATAACTATTATACCCCTGGGGCTTCATCAACTTGCTTTATT
TCCCACTATTTTACTATCATCATAtacccaactggcacacaacgttgttt
taacgtttaataacgttatttggacgttatgaatgtcacatagACGTTCT
TTTGACGTTGCGTGCCGTCTGGGTAAACAGGGAATCTTTTTTATGAAGTG
TAAATCGACCTCTGGAGAACTTGAACTCATACCCCATACTCGGCTTCTCA
GGAAAATCTTTTAgaagaataaaatcaaataattcCTTGTTTAAACAGAT
TAATTTGAATTCAATTTTCCTTTGAGGAAGTGAAAAANTTAACCTTCTGG
AAAACTTTAACTTGTTCCTCGTGATTCGCTTCCCTGAAAAACCTTGCAGG
AATAACATATTCAAATGATTCCTTATTTAAACagattgattttgaaaaaa
tttcctttgaggaaatcaaaaataccaaagtaggaaaatttttgaaacga
tTTTCCGcaatgaaacacataaaagAGGTTCAAAAACTGTGCATTTTCAT
TCATCAGCTGTTTTCAGAGCATTTGAAAAGATGAAGACATTATCAATTCT
TTTGATCGTTGGCTTTGCCACATTCGCAGTACTTGGTAAGCTCAATTTGA
CTTTGAATCTTATATTCATAATCTATTTGGTAAGGAGAAAATCAGAGGAA
CAATCCTTTCTACAAATTCTCCTCTGACAACCACAGTAAAACTTTGACCG
AGTTTTGGTGAATGTGACAAGAGTCTTTAACTTAAGATCTTTATTTGAAC
AACTTAAAAATACCAAACATAGATTGCCAGAAATGTTTAACAAAACCTCC
AGCACGTGCACATTCTGCATAATCTATGGTGGAAAACTTGATCTTTCTGG
TTGATTGTATACATTGGGGAACGGCGACCACAACTATACCCATTCCGTTA
AATACGCCCTTGATTTAGAACAAAGATTTTCCTGTGTAGCGGAAAAAGTA
GGCCGATACTAATAAGGTTCGCTTAGAGATCTAAACAAACCAACACTAAT
gaactttttttgcttattttccttttcagctCAACCGGCCCGACCCGCTG
TACCTAAAAGAATTCAAAAGGAACTTGAGAAGGGAATCGTTAAAGAATTA
TCCAAAGAAGTTGTGAAAAGTAAGTCCTTTTTAAACTGTTTCTTAATGGA
AGAGAAGTTCGACTAAAATTTAACCATAACCTATAAACAAACATCTCTAA
CACTACCTTATCAAGAGCACTTGCTAAAGAATTTAACGATTTCGTCGATT
ATAATTCAGCAAACCTTAAATATACAGTTGACGTTCTCTAATCCGAGGTT
CTACTTTTCAATATACACCATTATTCAATCataatattgaaaatttgaca
agAAACTCTCGTAAACGACGCTCTTCTATTCGTTAAAAATCCCTTTAAAA
TCGAATCAGAGAGCGTCAAGTagtttaaaatgtaaaaatcataTTCACGT
ACCAatcaggctcggatacagagggaggctataaccaatggaggagagtg
ctctttattatcgtattaccttatatggaaactaattactctccatgaat
aagatagcctacctcctgtatccgaccctgccaatataatattctctttc
agaaatgaaagaaaaagctcAGCATGACGACGAAGACGATGATGATGCAG
TATTGGGTAAGATCTATTTTACATTGCATCTTGCATGTGCTTTGTATCGG
ATAAGCTCTTTGTTTAGCTAGGGAAAACGATCCTTCTATCCTACAGACAA
AGTTGTCTGCTAAACTTAAGAACGAGCCATTATTActtaataccttaagg
gaagaaatttttgcagaaCAAATATTCGCGGTTATTCGACGAATCGGCGA
AATtgaattccgcgaaacacgaatattttcagaattagaaaaattatcct
taaaatgtgttttcagGGCAAAAAAAGCCATATTTTAGACAAAAAATTCT
CTTataccgcgaaattaaatttcgccaaacttccgaattttgagctgtga
accggaaaattaaattctgcgaaaatttcttcccacgAAAATTTTATCCC
TTAAAGTACACTTTTTTAATAGGGAGAATAAACTATATATGAACATatag
gcttcgatgaccaaaatgctaagaacaagttaagaacattttaaggcttt
gtggactctaaaacacctgattccTTGGTTAAATTGACATAAATACTCAC
AAACTGGTTAAAAGatagaacatgttaaaaacatttttcagctTAAATCT
CAGAAAGTTGGTTAAGTTAAAGTCCTCGTTTTAAGTGTTTCTTAATGGAA
AATAAATTAGATCGAAAAAAGAGGTTGAAATTCAATCAAGACCTTATAAC
GAGGAAACCGTATGAACAAAGTCGTTCCATAAACAATCTTGTCTTCTCTT
TCAGAAGCTGAAACAGACGACGAAGACTTTCATGACGAAATTCTTGATCG
CCAATTGGACGCAGATGCAAAGCCTCTTTTCTTTAGATCGATATGGCGCA
GCATCAAGAGTGCTTTAGGTTGAGTTGAATCGAATAAAATTTATTCTCTT
GTATTTAATCAAATAGAAATACTCGTGCAACAAtcgaaaatgaaataaat
tataGCTAAGCAGGTCAGGATATTTAATCCCATAGATGGGTGCATCTCAC
CTAAGGGATGGCAACCTGTTTCCTGGATTGGTGACGATTTGGATATGAAT
ATTTGTATAATGTTGAAATAATTTAACGAGAATAGAAACAAGAAGCTagt
aaaatcttcaaatattcAACTTGTACTTCTTTTTGAATTTAACCTTTCCC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028302-exon-sc0000673-1491911889:162457..162534 | TCONS_00028302-exon-sc0000673-1491911889:162457..162534 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1510915933:162457..162534 | TCONS_00028302-exon-sc0000673-1510915933:162457..162534 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1575043694:162457..162534 | TCONS_00028302-exon-sc0000673-1575043694:162457..162534 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1491911889:162960..163049 | TCONS_00028302-exon-sc0000673-1491911889:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1510915933:162960..163049 | TCONS_00028302-exon-sc0000673-1510915933:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1575043694:162960..163049 | TCONS_00028302-exon-sc0000673-1575043694:162960..163049 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1491911889:163815..163868 | TCONS_00028302-exon-sc0000673-1491911889:163815..163868 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1510915933:163815..163868 | TCONS_00028302-exon-sc0000673-1510915933:163815..163868 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1575043694:163815..163868 | TCONS_00028302-exon-sc0000673-1575043694:163815..163868 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1491911889:171711..172107 | TCONS_00028302-exon-sc0000673-1491911889:171711..172107 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1510915933:171711..172107 | TCONS_00028302-exon-sc0000673-1510915933:171711..172107 | Clytia hemisphaerica | exon |
| TCONS_00028302-exon-sc0000673-1575043694:171711..172107 | TCONS_00028302-exon-sc0000673-1575043694:171711..172107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000673 | supercontig | sc0000673:162457..172107 + |
Blast
The following BLAST results are available for this feature:
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