XLOC_016035 (gene) - C. hemisphaerica

Overview
NameXLOC_016035
Unique NameXLOC_016035
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000673:162386..172107+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016035 ID=XLOC_016035|Name=XLOC_016035|organism=Clytia hemisphaerica|type=gene|length=9722bp|location=Sequence derived from alignment at sc0000673:162386..172107+ (Clytia hemisphaerica)
aaatttttgaaacgatTTTCCGcaatgaaacacataaaagAGGTTCAAAA
AGTGTTCATTTTCAATCATCAGCTGttttgaaacatttgaaaaGATGAAG
ACATTATCAATTCTTTTGATCGTTGGCTTTGCCACATTCGCAGTACTTGG
TAAGCTCGCAATTTTACTTTGCATCTTCTATAatttattatgaaaaaaac
tgagaaaaacTTGAAGGGGCGGACAATATAATCACGAAGAAAGTTTATTA
GCCCTACCCCAGGCAAAGCTACTAGAAAAAGCGTCCCCAGGTACTCTCAA
GACACCCCCTCTGGAATGTTCGTGATAGAGAGTTAGCCTGAAAACCATCC
GTGATTCTCAAAACATAGATGTGCAGGATCCCAAAAACAGTTAAAGACCT
TGTTCACCGGCAAGGTGGGGGTAATTGCCCCATATTGCCTGGACTATTAA
GATAATCAAAGCAGGAATGTGGTCAAGTTTTTGTTATCAAAGTCTTCCTT
GACCAATTAAAAAGATTCGCTTAGAGATCTCAATAATGATTTAATTGACT
ATTATAGTACATTTTCCTTTTTAGCCCGACCTGCCAAACCCGCTGTACCT
AAAAGAATTCAAAAGGAGCTTGAGAAGGGAATCGTCAAAGAATTATCCAA
AGAAGTTGTGAAAAGTAAGTCTTTATTAAACTGTTTCTTAATGGAAGAAA
AGTTGGACTGAATTTTAACCATAACATGTAAGCAAACATCTCTAACACTG
CCTTATCAAGAGCACTTGCTAAAGAATTTGACGATTTCGTCGATTATATT
CAGCAAACCTTAAATATACAGTTGACGTTCTCTAATTCAAGGTTCTACTT
TTCCATATGCATCATTATTCAATCATAATATTGAAAGTTTGacaggcgag
accaatttaatttgggcccgaccgaccctatttttgctaaaatcaaaaaa
ataataatattgaatttccactacaatatattttacacactagttatttg
taagaaagatttgtaagaaaatttgaataaagctgaaaattaattcaaga
aattgaaaaatttagaaaatccagCATTAAGATACACACATACACTAAGA
TTTAATCAtgatcttcatcaaagataaaaaaagtgaattcttgaaccaga
tattttttggaaaacattttcggtactttaaCAACCCtgatgaatgaaaa
atttatttttattttaccgaccgacagacccatattttgctaacgatctg
cccgtagaacaacaaattaaattggtctcgccacaagaaactctcgtaaa
cgacgctctactattccaTACGCTCCctcattcgatgaaaatccctttga
aaattgaatcagagagcgtcaactgtagcttaaaatgtaaaaaatcatGT
TGAAGTAACAATATAATATTCTCTTTcagaattaaaagaaaaagcTCAGC
ATGACGACGAAGACGATGATGATGCAGTATTGGGTAAGATCTATTTTAGA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNcttataaaaaaaacgtttagaaaccaaaatttca
tgctcttgaaataatctttcatattcaagacttcgtgagcaaaaaaaaca
tctatctcattaaaaaattaagtaatttggctaagaacattgatgtatgc
ttattaaatagtgattcttatagataaacatgcgttttttgagccaacaa
aatttttttgaaaaaatctgcttgagccatcttttacctatgatggtacc
ctactttcatacaaaaaatcagaaaaaaattaatgatccaatttttcaga
aagtctaaaaaaccagttttttagccgttttttggcccaaatttgcccca
aaattttttttttcgaaaatcgggctccgtcacattttggccaccaccat
tttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttgtaccaaaaatca
aaagattcctatgattcaatcctgagaaaagttggtaacagacgaacgaa
cgaacgaacggacgaacggacggacggacgaacaaacccaggttaattta
taggacctccaccggggtaggtccaaaaagctctTTGTTCAGCTAGGGAA
AACGATCCTTCCATCGTACGGACAAAATTGTCTGCTAATGGCTAAAATTA
AAGAACTAAACGAGTCATTGTTACttattacttttttaaattaaacttta
gtggcttcaaattattgataggcccaattgtaggtCCCTAGATATtcgcc
tcgttttggcgaaaaactcgtccctaggccccaaaaatcaaaatttttga
aaaatgaaaaatatgccCCAGATATTtgcccaaggaacaagtgtgccaaa
tttcagccaaatccgacaatttttgcagtttccaggctgccccaaagttt
tagcctggttttggcaaaaaaatcgtccccaggccccaaaaatcaaaatt
tttgaaaaatgaaaaaacacccccagatattcacccaaggaacaaatgtg
ccaaatttctgccaaatctgacaatttttgaagtctccaatattttggga
catacacacacacagacattcttAGATTCTAGCTTAACTGAAGTTATGAG
AATAGGAGAAataaactacataagaacatacATAGGCTTTGATGACcgaa
atgctaagaacaagttaagaacattttaagggctTTGTTGATTCTAAAAC
ACCTAATTCCTTGGTTAAGTTGACATAAATACTCACAAActggttaaaat
aagaacatgttaagaacatttttcagcTTAAATCTCAGAAAGTTGGTTAA
GTTAAAGTCCTTTTTTAGATGTTTGTTAATGGAAAATAAATTAGATCGAA
AAAAGAGGTTGAAATTCAATCAAGACCTATAACGAGGAAACCGTATGAAC
AAAGTCGTTCCATAAACAATCTTGTCTTCTCTTTCAGAAGCTGAAACAGA
CGACGAAGACTTTGATGACGAAATTCTAGATCGCCAATTGGACGCAGATG
CAAAGCCTCTCTTCTTTGGATCGATCCTTTCGTCTATATTTGGTTGAATT
GAATCGAATTTAACATAATTTATTCCTCTGTATTTTAATAAAGAGGTTAC
ATGTAGCAAAAGAggataaaataaattttctaagCAGGCCCCGGTAATCT
ATAGATACAAACATCATCTCACCTAAGGGATGGCAACCTGTTTCCTGGAC
TGACGAGGACTTGGATATGAATATTTATCTTATGTTGAAATAATTTAACG
AACGtaaatataaacaaagaaactagaaaaaaacttttacttgtactttt
tcctgtgaaaatttttaacacgtaaaatttttttgacaattgtgaaaatt
ttcaacagtaCCAAAGCTTGTAACTTGAGAGTTAGACAATAGTTTTGTTA
GAATAGGTATTTTTATACTCCTTTGAAAGCATTCTCTTTAACCAACTTCG
AGATAGCCCATTACCTAGGAAAAACCTCCATATAGGAAAGAATTGGCAAA
TTAGCCCAGCGGTAAACTAGCCGATAGTGAAGAAGAATTTGATTTGAGAG
CAAAGTCTTAATAGTTGCATCTTTTTTTCACCATCCATAAAGAAAATTTC
TCATGTCTCAAAGAAAATAATCggcttaaaaaaacagttcaACTTGTTGT
GACTGGCCTGAATTTTTGGTGACGATAAAAAGCAGTCATGTAGGTCCAAC
TTGCAAAAGGCAATCGGTTGCCTACTTCACTGTCTTCTTCTTTAGTTCTC
TTTCCAAGAAACGTCATTTCTCTTCAACCAAATCCAGTGACTTGCTTTCT
CGGTTGCCTCTTCATTCTTTTATCGACTTGTTGATCATGTGTTTAAGGAG
GCCGATGTTTATGAGCCACTTCTTCAACCTATTGCCGACAAAACTTCCGC
AGCTAACTTCTACTGGGTGATGAGTTGCGTTTCTCCCTGCATCTTCGCAC
TTCTCTAGTACTAATTTTagtacgcatgcgtgttacaatgcaggattctt
tagaagAACAGACTGAGTATAATAAAGTATAAGTTGCATCCATAGTATTT
GCGTCGACGGAGAAAATCTTTGCTTTTTAACCCACTCGTTCAGCTTAACT
GGCTATCTTGGTGTAAACTACTGCAACCTCTTTTCCGCCTTTCCCAAAGT
TTAgagtacacactttttttataagaacatactttataagaatattcatg
atgaaaatagccaaaaagaTTTTGAGTATTACCAACCTAAGAATGTAATT
TTTAGAGCATCTTAAACTCaaaattgccaattattcccCAGTTAAGCTAA
ATTCAAGTTCACAAAAATGCTTTAAATTTGGATTAAATTTAGATTcttcc
taacctaagaataccgtaagaatattttagggtgattttcgccaaaatgt
taagaatatccatgatggaatgaaaaaaacaccattcttaaaataaaaac
cgTGACAGTGCTTAATTGGAATTCTTGTTGACAGGAAGATTGACATAAAT
AATGCGATTTTTGATCATAGAAAATTTTATTGTACTTTTAGTACGTTCTA
ATTGTGTAAAAATTGTGCACAAAGGCGTGCAAGCACAACtgtagtttagg
ggtcaaaaatggatcTAAATCTCAGACCTAAAAAATTGGCACccgtttgt
gtattttacagaccagaatagattCCCAGGATTAAatgaatttgacattt
tttctgCACTATTTGACCGAGTTCACTCATTATCTAAGTGGGACTTAAAA
GTTTTCACCAGGTTTTTCACCGGGAGAATCTGATCGGGTGGTCACTGATA
AAAAGGTGTATAGGCGTAAAAGGGATATCATATCCTCGTTCTGCTCTAAA
GCAGGCGTCTTCAAATTGAATTCTATGCTTCTTCAAAAACAGCAAAGATT
CTTTGGACATCACCATAGAATTGACAGAGTGAAGGCTGAGATCTTCAANA
TTCATAGAGGTATCAACCAAGATAATATTGAACAGGGAAATTCATAGAGG
TATCAACTAAGATAATATTGAACAGGAAAATTCATAGAGGTAATAACACT
AAGATAATTGAACAGGAAATTTCATACGCAGAAAGGACAAAAATCGCCTG
CTATATTAGTATCAAAGAAGCTTGACCAAACAAGGGCCAGGTGTTCGAGT
ATAGGACTCTTTCTAAAGTTTTCGTATTGTTGGCAACCCAACAGAAAAGA
AAATTACGAATATGAAACGATCTTATGGGCGCCTTctttgcccggggggg
gggCAAGATGGGTTACGGGGATGCTCCGCTGGTCAGGGTACCTTTTTTAA
CGTCcacgagtcccaggtagggtcgctaaaacaccaaaatagaaaaatca
gtctcccgtagggtgcctatttttggaaattttggggtaaagtagaaaat
ttgacaacattttgaaattttagtaacattcagggtcacttttttcgcaa
atttcgagtcccacgtagggtccatttttcgaacctccgcggagcacccc
cgtcggtcgacaagggtagtggGGGACCGCGGGCTTCTTTGGACTTTCGA
AATCACATTAGGATCTGTTGCAAAATTAAGGTACATATCTGATGGACAAA
TTGAGggtattgtattgtatcgtATTGTTTCTTTATTTCACGTTGGCTTT
AAGAATTAACAGCTGGGGTTAAGAAAATTATAATGAAATAACANCTATTT
CACGTTggctttaaaaaataatagctGGGGTTAAGAAAATTACAATGAAA
TAACAAATTCTAATAAACACCAACCCCTAATAGATTTTTAATTACGGCAT
AACCTGCAGTTGCagggaatttcattttcttttgtgaattacttaagtaa
tttttcaaaatcttcagaAGAAGAACTCCCACGTGAAACTTGgatttcgt
tttttttagaGATTTGAAGACCTCATGTATAGAGCAATTCTTCCTTATAA
ACTTTAAGCACCTTCCACCTTTCCAAAGGCTTTTTAAATGCCTCTCGTAT
GCAAAACAAAATTAGACTGAAATATTGCTTTGCCTGGCGTCCACCTGGTT
AAGTAGAATTTTCATGTCGGGTGGGTAAAAATGCAACGATTTTTGTAACA
GACCTCTTAACCCATTCCGTGCCCATGTCAAGTTTATGTGACATtgctaa
atgtttttttttaatcaattgaGCAGCAGCACAAAAAAAAACTGGGCAAA
AATCTATAAGTCATGTCCAGTATATTTGACATTGGGCCTGGCGGCTAACA
ACGGGTGAGAATAAATATACACGCCATCCGGCTgctcaaaatactttttt
cattttctcccgCCGAAAACAACTGCATCGCctcgaaaatttttgtaaat
tttctttttgccatCCCCCCCTGTGCAAGGAAAAGGTTAAGGGTTTCAAA
ATACATAAAATCTAATTCAGCAcacatccaaaaaaaaaatccgtcTATTT
TATCTCCAACATGCCTTAATTTTAAGTAAAGTTGTCCAAATTACGGTTAC
AATATTGTCCTTGATTTCAGCTATGAGCCCCCCTAAAAACCCAAATGGCT
AAAGTCTGGCGGAAATACCTGCCATCCAAAATAACTATTATACCCCTGGG
GCTTCATCAACTTGCTTTATTTCCCACTATTTTACTATCATCATAtaccc
aactggcacacaacgttgttttaacgtttaataacgttatttggacgtta
tgaatgtcacatagACGTTCTTTTGACGTTGCGTGCCGTCTGGGTAAACA
GGGAATCTTTTTTATGAAGTGTAAATCGACCTCTGGAGAACTTGAACTCA
TACCCCATACTCGGCTTCTCAGGAAAATCTTTTAgaagaataaaatcaaa
taattcCTTGTTTAAACAGATTAATTTGAATTCAATTTTCCTTTGAGGAA
GTGAAAAANTTAACCTTCTGGAAAACTTTAACTTGTTCCTCGTGATTCGC
TTCCCTGAAAAACCTTGCAGGAATAACATATTCAAATGATTCCTTATTTA
AACagattgattttgaaaaaatttcctttgaggaaatcaaaaataccaaa
gtaggaaaatttttgaaacgatTTTCCGcaatgaaacacataaaagAGGT
TCAAAAACTGTGCATTTTCATTCATCAGCTGTTTTCAGAGCATTTGAAAA
GATGAAGACATTATCAATTCTTTTGATCGTTGGCTTTGCCACATTCGCAG
TACTTGGTAAGCTCAATTTGACTTTGAATCTTATATTCATAATCTATTTG
GTAAGGAGAAAATCAGAGGAACAATCCTTTCTACAAATTCTCCTCTGACA
ACCACAGTAAAACTTTGACCGAGTTTTGGTGAATGTGACAAGAGTCTTTA
ACTTAAGATCTTTATTTGAACAACTTAAAAATACCAAACATAGATTGCCA
GAAATGTTTAACAAAACCTCCAGCACGTGCACATTCTGCATAATCTATGG
TGGAAAACTTGATCTTTCTGGTTGATTGTATACATTGGGGAACGGCGACC
ACAACTATACCCATTCCGTTAAATACGCCCTTGATTTAGAACAAAGATTT
TCCTGTGTAGCGGAAAAAGTAGGCCGATACTAATAAGGTTCGCTTAGAGA
TCTAAACAAACCAACACTAATgaactttttttgcttattttccttttcag
ctCAACCGGCCCGACCCGCTGTACCTAAAAGAATTCAAAAGGAACTTGAG
AAGGGAATCGTTAAAGAATTATCCAAAGAAGTTGTGAAAAGTAAGTCCTT
TTTAAACTGTTTCTTAATGGAAGAGAAGTTCGACTAAAATTTAACCATAA
CCTATAAACAAACATCTCTAACACTACCTTATCAAGAGCACTTGCTAAAG
AATTTAACGATTTCGTCGATTATAATTCAGCAAACCTTAAATATACAGTT
GACGTTCTCTAATCCGAGGTTCTACTTTTCAATATACACCATTATTCAAT
CataatattgaaaatttgacaagAAACTCTCGTAAACGACGCTCTTCTAT
TCGTTAAAAATCCCTTTAAAATCGAATCAGAGAGCGTCAAGTagtttaaa
atgtaaaaatcataTTCACGTACCAatcaggctcggatacagagggaggc
tataaccaatggaggagagtgctctttattatcgtattaccttatatgga
aactaattactctccatgaataagatagcctacctcctgtatccgaccct
gccaatataatattctctttcagaaatgaaagaaaaagctcAGCATGACG
ACGAAGACGATGATGATGCAGTATTGGGTAAGATCTATTTTACATTGCAT
CTTGCATGTGCTTTGTATCGGATAAGCTCTTTGTTTAGCTAGGGAAAACG
ATCCTTCTATCCTACAGACAAAGTTGTCTGCTAAACTTAAGAACGAGCCA
TTATTActtaataccttaagggaagaaatttttgcagaaCAAATATTCGC
GGTTATTCGACGAATCGGCGAAATtgaattccgcgaaacacgaatatttt
cagaattagaaaaattatccttaaaatgtgttttcagGGCAAAAAAAGCC
ATATTTTAGACAAAAAATTCTCTTataccgcgaaattaaatttcgccaaa
cttccgaattttgagctgtgaaccggaaaattaaattctgcgaaaatttc
ttcccacgAAAATTTTATCCCTTAAAGTACACTTTTTTAATAGGGAGAAT
AAACTATATATGAACATataggcttcgatgaccaaaatgctaagaacaag
ttaagaacattttaaggctttgtggactctaaaacacctgattccTTGGT
TAAATTGACATAAATACTCACAAACTGGTTAAAAGatagaacatgttaaa
aacatttttcagctTAAATCTCAGAAAGTTGGTTAAGTTAAAGTCCTCGT
TTTAAGTGTTTCTTAATGGAAAATAAATTAGATCGAAAAAAGAGGTTGAA
ATTCAATCAAGACCTTATAACGAGGAAACCGTATGAACAAAGTCGTTCCA
TAAACAATCTTGTCTTCTCTTTCAGAAGCTGAAACAGACGACGAAGACTT
TCATGACGAAATTCTTGATCGCCAATTGGACGCAGATGCAAAGCCTCTTT
TCTTTAGATCGATATGGCGCAGCATCAAGAGTGCTTTAGGTTGAGTTGAA
TCGAATAAAATTTATTCTCTTGTATTTAATCAAATAGAAATACTCGTGCA
ACAAtcgaaaatgaaataaattataGCTAAGCAGGTCAGGATATTTAATC
CCATAGATGGGTGCATCTCACCTAAGGGATGGCAACCTGTTTCCTGGATT
GGTGACGATTTGGATATGAATATTTGTATAATGTTGAAATAATTTAACGA
GAATAGAAACAAGAAGCTagtaaaatcttcaaatattcAACTTGTACTTC
TTTTTGAATTTAACCTTTCCCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028299TCONS_00028299Clytia hemisphaericatranscript
TCONS_00028300TCONS_00028300Clytia hemisphaericatranscript
TCONS_00028301TCONS_00028301Clytia hemisphaericatranscript
TCONS_00028302TCONS_00028302Clytia hemisphaericatranscript
TCONS_00028303TCONS_00028303Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00028301-proteinTCONS_00028301-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000673supercontigsc0000673:162386..172107 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46	1.6	1.37	0.35	0	0	0	0	0.07	0.09	0	0.23	39.71	49.41	495.49	219.19	116.44	219.77	781.33	1322.56	189.86	172.23	355.44	321.44	136.61	177.48	52.21	128.5	25.17	28.87