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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028303 ID=TCONS_00028303|Name=TCONS_00028303|organism=Clytia hemisphaerica|type=transcript|length=610bp
GAGCATTTGAAAAGATGAAGACATTATCAATTCTTTTGATCGTTGGCTTT
GCCACATTCGCAGTACTTGctCAACCGGCCCGACCCGCTGTACCTAAAAG
AATTCAAAAGGAACTTGAGAAGGGAATCGTTAAAGAATTATCCAAAGAAG
TTGTGAAAAaaatgaaagaaaaagctcAGCATGACGACGAAGACGATGAT
GATGCAGTATTGGAAGCTGAAACAGACGACGAAGACTTTCATGACGAAAT
TCTTGATCGCCAATTGGACGCAGATGCAAAGCCTCTTTTCTTTAGATCGA
TATGGCGCAGCATCAAGAGTGCTTTAGGTTGAGTTGAATCGAATAAAATT
TATTCTCTTGTATTTAATCAAATAGAAATACTCGTGCAACAAtcgaaaat
gaaataaattataGCTAAGCAGGTCAGGATATTTAATCCCATAGATGGGT
GCATCTCACCTAAGGGATGGCAACCTGTTTCCTGGATTGGTGACGATTTG
GATATGAATATTTGTATAATGTTGAAATAATTTAACGAGAATAGAAACAA
GAAGCTagtaaaatcttcaaatattcAACTTGTACTTCTTTTTGAATTTA
ACCTTTCCCG Run BLAST on NCBI transcript from alignment at sc0000673:169823..172107+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028303 ID=TCONS_00028303|Name=TCONS_00028303|organism=Clytia hemisphaerica|type=transcript|length=2285bp|location=Sequence derived from alignment at sc0000673:169823..172107+ (Clytia hemisphaerica)
GAGCATTTGAAAAGATGAAGACATTATCAATTCTTTTGATCGTTGGCTTT
GCCACATTCGCAGTACTTGGTAAGCTCAATTTGACTTTGAATCTTATATT
CATAATCTATTTGGTAAGGAGAAAATCAGAGGAACAATCCTTTCTACAAA
TTCTCCTCTGACAACCACAGTAAAACTTTGACCGAGTTTTGGTGAATGTG
ACAAGAGTCTTTAACTTAAGATCTTTATTTGAACAACTTAAAAATACCAA
ACATAGATTGCCAGAAATGTTTAACAAAACCTCCAGCACGTGCACATTCT
GCATAATCTATGGTGGAAAACTTGATCTTTCTGGTTGATTGTATACATTG
GGGAACGGCGACCACAACTATACCCATTCCGTTAAATACGCCCTTGATTT
AGAACAAAGATTTTCCTGTGTAGCGGAAAAAGTAGGCCGATACTAATAAG
GTTCGCTTAGAGATCTAAACAAACCAACACTAATgaactttttttgctta
ttttccttttcagctCAACCGGCCCGACCCGCTGTACCTAAAAGAATTCA
AAAGGAACTTGAGAAGGGAATCGTTAAAGAATTATCCAAAGAAGTTGTGA
AAAGTAAGTCCTTTTTAAACTGTTTCTTAATGGAAGAGAAGTTCGACTAA
AATTTAACCATAACCTATAAACAAACATCTCTAACACTACCTTATCAAGA
GCACTTGCTAAAGAATTTAACGATTTCGTCGATTATAATTCAGCAAACCT
TAAATATACAGTTGACGTTCTCTAATCCGAGGTTCTACTTTTCAATATAC
ACCATTATTCAATCataatattgaaaatttgacaagAAACTCTCGTAAAC
GACGCTCTTCTATTCGTTAAAAATCCCTTTAAAATCGAATCAGAGAGCGT
CAAGTagtttaaaatgtaaaaatcataTTCACGTACCAatcaggctcgga
tacagagggaggctataaccaatggaggagagtgctctttattatcgtat
taccttatatggaaactaattactctccatgaataagatagcctacctcc
tgtatccgaccctgccaatataatattctctttcagaaatgaaagaaaaa
gctcAGCATGACGACGAAGACGATGATGATGCAGTATTGGGTAAGATCTA
TTTTACATTGCATCTTGCATGTGCTTTGTATCGGATAAGCTCTTTGTTTA
GCTAGGGAAAACGATCCTTCTATCCTACAGACAAAGTTGTCTGCTAAACT
TAAGAACGAGCCATTATTActtaataccttaagggaagaaatttttgcag
aaCAAATATTCGCGGTTATTCGACGAATCGGCGAAATtgaattccgcgaa
acacgaatattttcagaattagaaaaattatccttaaaatgtgttttcag
GGCAAAAAAAGCCATATTTTAGACAAAAAATTCTCTTataccgcgaaatt
aaatttcgccaaacttccgaattttgagctgtgaaccggaaaattaaatt
ctgcgaaaatttcttcccacgAAAATTTTATCCCTTAAAGTACACTTTTT
TAATAGGGAGAATAAACTATATATGAACATataggcttcgatgaccaaaa
tgctaagaacaagttaagaacattttaaggctttgtggactctaaaacac
ctgattccTTGGTTAAATTGACATAAATACTCACAAACTGGTTAAAAGat
agaacatgttaaaaacatttttcagctTAAATCTCAGAAAGTTGGTTAAG
TTAAAGTCCTCGTTTTAAGTGTTTCTTAATGGAAAATAAATTAGATCGAA
AAAAGAGGTTGAAATTCAATCAAGACCTTATAACGAGGAAACCGTATGAA
CAAAGTCGTTCCATAAACAATCTTGTCTTCTCTTTCAGAAGCTGAAACAG
ACGACGAAGACTTTCATGACGAAATTCTTGATCGCCAATTGGACGCAGAT
GCAAAGCCTCTTTTCTTTAGATCGATATGGCGCAGCATCAAGAGTGCTTT
AGGTTGAGTTGAATCGAATAAAATTTATTCTCTTGTATTTAATCAAATAG
AAATACTCGTGCAACAAtcgaaaatgaaataaattataGCTAAGCAGGTC
AGGATATTTAATCCCATAGATGGGTGCATCTCACCTAAGGGATGGCAACC
TGTTTCCTGGATTGGTGACGATTTGGATATGAATATTTGTATAATGTTGA
AATAATTTAACGAGAATAGAAACAAGAAGCTagtaaaatcttcaaatatt
cAACTTGTACTTCTTTTTGAATTTAACCTTTCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028303-exon-sc0000673-1491911889:169823..169891 | TCONS_00028303-exon-sc0000673-1491911889:169823..169891 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1510915933:169823..169891 | TCONS_00028303-exon-sc0000673-1510915933:169823..169891 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1575043694:169823..169891 | TCONS_00028303-exon-sc0000673-1575043694:169823..169891 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1491911889:170336..170425 | TCONS_00028303-exon-sc0000673-1491911889:170336..170425 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1510915933:170336..170425 | TCONS_00028303-exon-sc0000673-1510915933:170336..170425 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1575043694:170336..170425 | TCONS_00028303-exon-sc0000673-1575043694:170336..170425 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1491911889:170909..170962 | TCONS_00028303-exon-sc0000673-1491911889:170909..170962 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1510915933:170909..170962 | TCONS_00028303-exon-sc0000673-1510915933:170909..170962 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1575043694:170909..170962 | TCONS_00028303-exon-sc0000673-1575043694:170909..170962 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1491911889:171711..172107 | TCONS_00028303-exon-sc0000673-1491911889:171711..172107 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1510915933:171711..172107 | TCONS_00028303-exon-sc0000673-1510915933:171711..172107 | Clytia hemisphaerica | exon |
| TCONS_00028303-exon-sc0000673-1575043694:171711..172107 | TCONS_00028303-exon-sc0000673-1575043694:171711..172107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000673 | supercontig | sc0000673:169823..172107 + |
Blast
The following BLAST results are available for this feature:
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