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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028316 ID=TCONS_00028316|Name=TCONS_00028316|organism=Clytia hemisphaerica|type=transcript|length=2223bp
GGCATTCTTTTGCGCGAAGAGTATCAGACAGGAGAAAAACATACAAAACT
GAATTTAAAGGTAGGAGATAACCGCTCttataatgggcttttccagaaat
agtccgtgccccctgttgaggatatcggaggGGTTCAGGGGGTAAAcgat
ttttgctcaaaagtggatatcaagggggttaaatatctacaagggagcgg
ataccCAGGGGgtaagtaaaaagtaaaaaatacgatatccaggggtaagc
atctttataagagatcCAGGGGATTGAGCATATTtgtaagagtggatatc
cagggggtctttgctaataaagtaggatatccagggggttcgatacttcg
aaaaattaatatcCTCAACAATGGgggtaaaatctttttctggaaaagcc
caatataaTTCATTTTGGAATaagttaaaaatattgtttATATGATATAT
ACAAAGCAGGCACGCTTTTTACATGGAGAAGGCAGAATTTACAAGacgta
ttttcaaattttattctcTTGCACTTCGGGAAAACGAAAATCACGTGTAA
AAATGCTTTGGCAAGCAATACGTTAATTGTTATCTAACCAATAGTGGGGC
CAGTTGATTATTGGTACCCAGAATTTTGCTATTCGAGGAATCTATTAATC
CTTCGAAAATAGCTTTTTGACTTGTCTCGATTAGTTCGACATTCAATCTC
GTTCTATTTGTGTGTTTGTTCTCGAAATAAACTCATAGTAACAGTCCAAA
GATTAAGAAAGAGTATCGTGAGTGGAGTAGGGCTAAGAAAAGAAACACAG
TTTTTCGAATATTAAACTGACTCATAATTGGTCCAGCGTGCAGCAGAATG
Gatctttaaaaagcaactgatcgaaaagattgtgtctttgtcggggcctg
tgcgcgcaataaattaacaagtcgaGGCTAAACCAACGATCTAGAACTTT
TGCCCCGCgtacccgcgcgatgtttgacctatgttttggattgaattggt
agtagagtcaaatttcctgGTTAGATAAAAGNtatgttttggattgaatt
ggtagtagagtcaaatttcccggttagattaaagggttgtttcaggtagg
gtcaggtagggttagggctagggttggggatgggacCCCTGGTTAGGGGt
ttagcccccgggtagagtttggagtaaataccatgtttataagcaacttt
gaactccttaatgcaGTCGTGACTCGATGGCCGAATGGTTAaggtgcttt
gtatatagtgggttcgaatcccatcagcggcaaaagtttcgaaatttcgg
gaaatgcatcaaaaactttcaaaacttagcaatacaaagaaagtgtcaaa
gaatagaagctcagagtggaggatgggaaggaaatttttttgcgtcactt
aagtaacccggtacgaacgacattcggttattgccacgtcagctggacct
tcacgccgctccggcttcttgttatGATTTAAAAGTTACAAGCATTCAAT
TAATATGAAAACGTATAAACTCAAATAATTAAGTTTTATCAAAACACAAT
GCACGCAACAATTGCTGTCACTATCATCATGAGGTGTTTTAAACCGTAAT
TTGAATTAATACCATCTGCCGCGTTTTTGTATTGTGCCACGGTAACCTCG
CTATTTTTTTCCCCATCGCTTGTCATCTGACTTgtggtggttgttgttgt
tgtatcCGGTAGAATTGGGAATGGTGGGATTCCTCTGCCGGAGGCTTCAA
CAACATCTGGTGATTCCCTNATTGGGAATGGTGGGATTCCTCCGCCGGAG
GCTCCAACAACATCTGGTGATTCCCCACCGAAGCCAACATACTCAAGCGA
TCCTCCATCTGGATTTGAAGTTGTTGTAGCTGGCGATTCGGTAGGTTCTG
TTGTGGATGGTGCATTTGTAACATCTAGTGGGTTTGGATTGAATGGGAAC
CCTCCACCACCACCTTTAGTCAATCCTCCATCTGAAATTttagttgttgt
tgttgtagttggtGCATCTGTAAACAGTGGAAAACCGCCAGGGGGCATTC
CAGCAAAGGTGTATTGGTGTTTCATGGAAGAAACTAAAAGAGTCAGAGCC
AGAATCTTCATCAGTATCATCTTCAATGATGtttattttggaaaaacttC
ATCTGTCGCAAACTGAGTTATTTGTTCATGATTATGAAGGTCTTTTTGAT
GGTCACAACTCGTTCTGTCTTCC Run BLAST on NCBI transcript from alignment at sc0000673:123400..125622- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028316 ID=TCONS_00028316|Name=TCONS_00028316|organism=Clytia hemisphaerica|type=transcript|length=2223bp|location=Sequence derived from alignment at sc0000673:123400..125622- (Clytia hemisphaerica)
GGCATTCTTTTGCGCGAAGAGTATCAGACAGGAGAAAAACATACAAAACT
GAATTTAAAGGTAGGAGATAACCGCTCTTATAATGGGCTTTTCCAGAAAT
AGTCCGTGCCCCCTGTTGAGGATATCGGAGGGGTTCAGGGGGTAAACGAT
TTTTGCTCAAAAGTGGATATCAAGGGGGTTAAATATCTACAAGGGAGCGG
ATACCCAGGGGGTAAGTAAAAAGTAAAAAATACGATATCCAGGGGTAAGC
ATCTTTATAAGAGATCCAGGGGATTGAGCATATTTGTAAGAGTGGATATC
CAGGGGGTCTTTGCTAATAAAGTAGGATATCCAGGGGGTTCGATACTTCG
AAAAATTAATATCCTCAACAATGGGGGTAAAATCTTTTTCTGGAAAAGCC
CAATATAATTCATTTTGGAATAAGTTAAAAATATTGTTTATATGATATAT
ACAAAGCAGGCACGCTTTTTACATGGAGAAGGCAGAATTTACAAGACGTA
TTTTCAAATTTTATTCTCTTGCACTTCGGGAAAACGAAAATCACGTGTAA
AAATGCTTTGGCAAGCAATACGTTAATTGTTATCTAACCAATAGTGGGGC
CAGTTGATTATTGGTACCCAGAATTTTGCTATTCGAGGAATCTATTAATC
CTTCGAAAATAGCTTTTTGACTTGTCTCGATTAGTTCGACATTCAATCTC
GTTCTATTTGTGTGTTTGTTCTCGAAATAAACTCATAGTAACAGTCCAAA
GATTAAGAAAGAGTATCGTGAGTGGAGTAGGGCTAAGAAAAGAAACACAG
TTTTTCGAATATTAAACTGACTCATAATTGGTCCAGCGTGCAGCAGAATG
GATCTTTAAAAAGCAACTGATCGAAAAGATTGTGTCTTTGTCGGGGCCTG
TGCGCGCAATAAATTAACAAGTCGAGGCTAAACCAACGATCTAGAACTTT
TGCCCCGCGTACCCGCGCGATGTTTGACCTATGTTTTGGATTGAATTGGT
AGTAGAGTCAAATTTCCTGGTTAGATAAAAGNTATGTTTTGGATTGAATT
GGTAGTAGAGTCAAATTTCCCGGTTAGATTAAAGGGTTGTTTCAGGTAGG
GTCAGGTAGGGTTAGGGCTAGGGTTGGGGATGGGACCCCTGGTTAGGGGT
TTAGCCCCCGGGTAGAGTTTGGAGTAAATACCATGTTTATAAGCAACTTT
GAACTCCTTAATGCAGTCGTGACTCGATGGCCGAATGGTTAAGGTGCTTT
GTATATAGTGGGTTCGAATCCCATCAGCGGCAAAAGTTTCGAAATTTCGG
GAAATGCATCAAAAACTTTCAAAACTTAGCAATACAAAGAAAGTGTCAAA
GAATAGAAGCTCAGAGTGGAGGATGGGAAGGAAATTTTTTTGCGTCACTT
AAGTAACCCGGTACGAACGACATTCGGTTATTGCCACGTCAGCTGGACCT
TCACGCCGCTCCGGCTTCTTGTTATGATTTAAAAGTTACAAGCATTCAAT
TAATATGAAAACGTATAAACTCAAATAATTAAGTTTTATCAAAACACAAT
GCACGCAACAATTGCTGTCACTATCATCATGAGGTGTTTTAAACCGTAAT
TTGAATTAATACCATCTGCCGCGTTTTTGTATTGTGCCACGGTAACCTCG
CTATTTTTTTCCCCATCGCTTGTCATCTGACTTGTGGTGGTTGTTGTTGT
TGTATCCGGTAGAATTGGGAATGGTGGGATTCCTCTGCCGGAGGCTTCAA
CAACATCTGGTGATTCCCTNATTGGGAATGGTGGGATTCCTCCGCCGGAG
GCTCCAACAACATCTGGTGATTCCCCACCGAAGCCAACATACTCAAGCGA
TCCTCCATCTGGATTTGAAGTTGTTGTAGCTGGCGATTCGGTAGGTTCTG
TTGTGGATGGTGCATTTGTAACATCTAGTGGGTTTGGATTGAATGGGAAC
CCTCCACCACCACCTTTAGTCAATCCTCCATCTGAAATTTTAGTTGTTGT
TGTTGTAGTTGGTGCATCTGTAAACAGTGGAAAACCGCCAGGGGGCATTC
CAGCAAAGGTGTATTGGTGTTTCATGGAAGAAACTAAAAGAGTCAGAGCC
AGAATCTTCATCAGTATCATCTTCAATGATGTTTATTTTGGAAAAACTTC
ATCTGTCGCAAACTGAGTTATTTGTTCATGATTATGAAGGTCTTTTTGAT
GGTCACAACTCGTTCTGTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028316-exon-sc0000673-1575043694:123400..125622 | TCONS_00028316-exon-sc0000673-1575043694:123400..125622 | Clytia hemisphaerica | exon |
| TCONS_00028316-exon-sc0000673-1510915933:123400..125622 | TCONS_00028316-exon-sc0000673-1510915933:123400..125622 | Clytia hemisphaerica | exon |
| TCONS_00028316-exon-sc0000673-1491911889:123400..125622 | TCONS_00028316-exon-sc0000673-1491911889:123400..125622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000673 | supercontig | sc0000673:123400..125622 - |
Blast
The following BLAST results are available for this feature:
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