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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028390 ID=TCONS_00028390|Name=TCONS_00028390|organism=Clytia hemisphaerica|type=transcript|length=950bp
ATTTAAGTACGGTTTTAATGAATCAAGATAAATACACAAAGGCtaattac
ccagctggcacacaacgttgtttgaacgtttttctaacattcacaacgtt
catataacgttagataaacgttgaaacaacgttgtgtgccagcaggGTAG
GAGGGCCTTTCCTCAACAGACACGATGATCATACGAGCCCAACTATGCAA
TATGCATTTTTCAATGAAAGGCATCTTTAGTGTGTGTGACCTTACATTCA
TCGAGTTTTCGAGTATAAAAGAGGCAACACCTTAATATTTATCCATTACT
GAAAAGAAACAGAGATATACAGAGaaaCTGCAAAGATGGGTGTGTTCACA
TTCTCAGCTTTTGTACTTTTCCTGGCTACTATTCCATTTGTTACTGCTCA
AAATGTCTTCAATGATTTCGCCCATTGTGGTATGAGTGCAAAATTGAATA
GAGATTTTTCACGTATCGTGGGTGGAACAGAGGCTGAACGAAAAGAACTT
CCATGGCAAGCAGCTTTATGGGGTGGCTCTGGAAAGCCATATTGCGGTGG
AACGTTGATCAGTAGCCAATATGTGGTCACTGCTGCACACTGCGTTGATG
GTAGTAGCCCACAGTATGTTGTACTTGGTGCACATGTCTTCGGCGGTGGC
ACTGAAAATAACAGGCAAGTCCGACAAGTCGCTAGTGTAATTTCCCATGA
GAATTACAATTCTCAAACACTGGCAAACGATATTGCTTTGATAAAGTTGA
AGAGCCCAGTAGAATATAACGACTATGTCAAACCAGCTTGTGTACCAGAA
AGTGGCGATGCACCAGATCCAAATACAGAAGTTGTCATTTCTGGCTGGGG
AACAACTCAGTCTGGAGGAAGTCAGCCCAACACCCTTCGAGAAACTAAGG
TGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAGAGTTACGGACAAAATGCA Run BLAST on NCBI protein sequence of TCONS_00028390-protein >TCONS_00028390-protein ID=TCONS_00028390-protein|Name=TCONS_00028390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MGVFTFSAFVLFLATIPFVTAQNVFNDFAHCGMSAKLNRDFSRIVGGTEA
ERKELPWQAALWGGSGKPYCGGTLISSQYVVTAAHCVDGSSPQYVVLGAH
VFGGGTENNRQVRQVASVISHENYNSQTLANDIALIKLKSPVEYNDYVKP
ACVPESGDAPDPNTEVVISGWGTTQSGGSQPNTLRETKVSVVSRSSCRQS
YGQNA Run BLAST on NCBI transcript from alignment at sc0000676:54909..56958+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028390 ID=TCONS_00028390|Name=TCONS_00028390|organism=Clytia hemisphaerica|type=transcript|length=2050bp|location=Sequence derived from alignment at sc0000676:54909..56958+ (Clytia hemisphaerica)
ATTTAAGTACGGTTTTAATGAATCAAGATAAATACACAAAGGCtaattac
ccagctggcacacaacgttgtttgaacgtttttctaacattcacaacgtt
catataacgttagataaacgttgaaacaacgttgtgtgccagcaggGTAG
GAGGGCCTTTCCTCAACAGACACGATGATCATACGAGCCCAACTATGCAA
TATGCATTTTTCAATGAAAGGCATCTTTAGTGTGTGTGACCTTACATTCA
TCGAGTTTTCGAGTATAAAAGAGGCAACACCTTAATATTTATCCATTACT
GAAAAGAAACAGAGATATACAGAGGTAAGTCCAAGCACacgcacaacgtt
gtttcaacgttcacctaacgttaaatggatgtcagatagacgttgaaaca
acactGTGTACCAAGAATCATTATTGCTAACATCTACCCATGGTTTTTTA
TAACATTTGCTAACAACATTTTTACCTTCATCTGAAAAgtaagctgtttc
accagtaTTGAGCCtgaattaaaataaatataaaatttcttctattttta
gaaaCTGCAAAGATGGGTGTGTTCACATTCTCAGCTTTTGTACTTTTCCT
GGCTACTATTCCATTTGTTACTGCTCAAAATGTCTTCAATGATTTCGCCC
ATTGTGGTATGAGTGCAAAATTGAATAGAGATTTTTCACGTATCGTGGGT
GGAACAGAGGCTGAACGAAAAGAACTTCCATGGCAAGCAGCTTTATGGGG
TGGCTCTGGAAAGCCATATTGCGGTGGAACGTTGATCAGTAGCCAATATG
TGGTCACTGCTGCACACTGCGTTGATGGTAGTAGCCCACAGTATGTTGTA
CTTGGTGCACATGTCTTCGGCGGTGGCACTGAAAGTAAGGAACGACCCAT
CGGggaatatatcttttatagtcaactctcactaattcgaacgtctactt
ttcgaatctttctgtaattcctacagctgaaaaaatatatacaaatacTT
TCCATAATTCAAATCTTAatataattcgaagaaaattgtTGAGAcagaat
cttttttatttgcatTACGAGACTGACTATCTATGTTTAAAGATTGGATA
AAGCTATATAATATTATAATGAAAAGTCTTTCATCAGCATATTTGCGAGT
TCTAGTTATAACGCTAATGTGTTTTTCTTCAACCAGATAACAGGCAAGTC
CGACAAGTCGCTAGTGTAATTTCCCATGAGAATTACAATTCTCAAACACT
GGCAAACGATATTGCTTTGATAAAGTTGAAGAGCCCAGTAGAATATAACG
ACTATGTCAAACCAGCTTGTGTACCAGAAAGTGGCGATGCACCAGATCCA
AATACAGAAGTTGTCATTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAG
TCAGCCCAACACCCTTCGAGAAACTAAGGTTATTATAATAAAACttatta
accctttcagtcccggagttttcacagctactttcccagagccgtaaaat
gagtttttgaatgcatttacttatgcttcaatatctctggaatcacaccc
tttttcacttatagtatgaggatcattttgatagaaagaaatttgcaaaa
tgacgtcatcagcgtgtcacgtgaccggagaaaggcaaaaaaagatttga
aaacagcaatttttttccattcatcaatgatatttttttatgaaaaaatg
gtTTAAACCCATTCATTCTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTTTC
GCCGGCCCTGCTGTATAGCACCAATTGTTATGGATCCTTGTTTTGTTTGC
TTAATTAACAATGTGCATTCACGCTATATAATCTAGAGCGTGATATTCTT
TAACAATATTTATTTGGTACTGCAAAATTCACGATGCGGCTATTGTACTG
TATGGagtttttgacaaatttcttatttttttttcttctttctacaTAGG
TGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAGAGTTACGGACAAAATGCA
Coding sequence (CDS) from alignment at sc0000676:54909..56958+ >TCONS_00028390 ID=TCONS_00028390|Name=TCONS_00028390|organism=Clytia hemisphaerica|type=CDS|length=1845bp|location=Sequence derived from alignment at sc0000676:54909..56958+ (Clytia hemisphaerica)
ATGGGTGTGTTCACATTCTCAGCTTTTGTACTTTTCCTGGCTACTATTCC
ATTTGTTACTGCTCAAAATGTCTTCAATGATTTCGCCCATTGTGGTATGA
GTGCAAAATTGAATAGAGATTTTTCACGTATCGTGGGTGGAACAGAGGCT
GAACGAAAAGAACTTCCATGGCAAGCAGCTTTATGGGGTGGCTCTGGAAA
GCCATATTGCGGTGGAACGTTGATCAGTAGCCAATATGTGGTCACTGCTG
CACACTGCGTTGATGGTAGTAGCCCACAGTATGTTGTACTTGGTGCACAT
GTCTTCGGCGGTGGCACTGAAAATAACAGGCAAGTCCGACAAGTCGCTAG
TGTAATTTCCCATGAGAATTACAATTCTCAAACACTGGCAAACGATATTG
CTTTGATAAAGTTGAAGAGCCCAGTAGAATATAACGACTATGTCAAACCA
GCTTGTGTACCAGAAAGTGGCGATGCACCAGATCCAAATACAGAAGTTGT
CATTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAGTCAGCCCAACACCC
TTCGAGAAACTAAGGTGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAGAGT
TACGGACAAAATGCAATGGGTGTGTTCACATTCTCAGCTTTTGTACTTTT
CCTGGCTACTATTCCATTTGTTACTGCTCAAAATGTCTTCAATGATTTCG
CCCATTGTGGTATGAGTGCAAAATTGAATAGAGATTTTTCACGTATCGTG
GGTGGAACAGAGGCTGAACGAAAAGAACTTCCATGGCAAGCAGCTTTATG
GGGTGGCTCTGGAAAGCCATATTGCGGTGGAACGTTGATCAGTAGCCAAT
ATGTGGTCACTGCTGCACACTGCGTTGATGGTAGTAGCCCACAGTATGTT
GTACTTGGTGCACATGTCTTCGGCGGTGGCACTGAAAATAACAGGCAAGT
CCGACAAGTCGCTAGTGTAATTTCCCATGAGAATTACAATTCTCAAACAC
TGGCAAACGATATTGCTTTGATAAAGTTGAAGAGCCCAGTAGAATATAAC
GACTATGTCAAACCAGCTTGTGTACCAGAAAGTGGCGATGCACCAGATCC
AAATACAGAAGTTGTCATTTCTGGCTGGGGAACAACTCAGTCTGGAGGAA
GTCAGCCCAACACCCTTCGAGAAACTAAGGTGTCTGTTGTAAGCAGAAGC
AGTTGCCGGCAGAGTTACGGACAAAATGCAATGGGTGTGTTCACATTCTC
AGCTTTTGTACTTTTCCTGGCTACTATTCCATTTGTTACTGCTCAAAATG
TCTTCAATGATTTCGCCCATTGTGGTATGAGTGCAAAATTGAATAGAGAT
TTTTCACGTATCGTGGGTGGAACAGAGGCTGAACGAAAAGAACTTCCATG
GCAAGCAGCTTTATGGGGTGGCTCTGGAAAGCCATATTGCGGTGGAACGT
TGATCAGTAGCCAATATGTGGTCACTGCTGCACACTGCGTTGATGGTAGT
AGCCCACAGTATGTTGTACTTGGTGCACATGTCTTCGGCGGTGGCACTGA
AAATAACAGGCAAGTCCGACAAGTCGCTAGTGTAATTTCCCATGAGAATT
ACAATTCTCAAACACTGGCAAACGATATTGCTTTGATAAAGTTGAAGAGC
CCAGTAGAATATAACGACTATGTCAAACCAGCTTGTGTACCAGAAAGTGG
CGATGCACCAGATCCAAATACAGAAGTTGTCATTTCTGGCTGGGGAACAA
CTCAGTCTGGAGGAAGTCAGCCCAACACCCTTCGAGAAACTAAGGTGTCT
GTTGTAAGCAGAAGCAGTTGCCGGCAGAGTTACGGACAAAATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028390-exon-sc0000676-1491911889:54909..55232 | TCONS_00028390-exon-sc0000676-1491911889:54909..55232 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1510915933:54909..55232 | TCONS_00028390-exon-sc0000676-1510915933:54909..55232 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1575043694:54909..55232 | TCONS_00028390-exon-sc0000676-1575043694:54909..55232 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1491911889:55460..55792 | TCONS_00028390-exon-sc0000676-1491911889:55460..55792 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1510915933:55460..55792 | TCONS_00028390-exon-sc0000676-1510915933:55460..55792 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1575043694:55460..55792 | TCONS_00028390-exon-sc0000676-1575043694:55460..55792 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1491911889:56095..56336 | TCONS_00028390-exon-sc0000676-1491911889:56095..56336 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1510915933:56095..56336 | TCONS_00028390-exon-sc0000676-1510915933:56095..56336 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1575043694:56095..56336 | TCONS_00028390-exon-sc0000676-1575043694:56095..56336 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1491911889:56908..56958 | TCONS_00028390-exon-sc0000676-1491911889:56908..56958 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1510915933:56908..56958 | TCONS_00028390-exon-sc0000676-1510915933:56908..56958 | Clytia hemisphaerica | exon |
| TCONS_00028390-exon-sc0000676-1575043694:56908..56958 | TCONS_00028390-exon-sc0000676-1575043694:56908..56958 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000676 | supercontig | sc0000676:54909..56958 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00028390 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.445e-22 Identity = 65/177 (36.72%), Postives = 93/177 (52.54%), Query Frame = 3
Query: 426 CGMSA-KLNRDFS-RIVGGTEAERKELPWQAALWGGSGKPYCGGTLISSQYVVTAAHCVDGSSPQYVVLGAHVFGGGTENNRQVRQVASVISHENYNSQTLANDIALIKLKSPVEYNDYVKPACVPESGDA-PDPNTEVVIXXXXXXXXXXXXPNTLRETKXXXXXXXXCRQSYGQN 947
CG+ A K FS RIV G A PWQ +L SG +CGG+LIS +VVTAAHC +VVLG + E QV V+ I+H ++NS T+ ND+ L+KL SP +Y + P C+ S +A + T V + G P L++ + +V+ + CRQ +G +
Sbjct: 19 CGIPAIKPALSFSQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHCNVSPGRHFVVLGEYDRSSNAE-PLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYWGSS 194
The following BLAST results are available for this feature:
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