|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028391 ID=TCONS_00028391|Name=TCONS_00028391|organism=Clytia hemisphaerica|type=transcript|length=1123bp
ATTTAAGTACGGTTTTAATGAATCAAGATAAATACACAAAGGCtaattac
ccagctggcacacaacgttgtttgaacgtttttctaacattcacaacgtt
catataacgttagataaacgttgaaacaacgttgtgtgccagcaggGTAG
GAGGGCCTTTCCTCAACAGACACGATGATCATACGAGCCCAACTATGCAA
TATGCATTTTTCAATGAAAGGCATCTTTAGTGTGTGTGACCTTACATTCA
TCGAGTTTTCGAGTATAAAAGAGGCAACACCTTAATATTTATCCATTACT
GAAAAGAAACAGAGATATACAGAGaaaCTGCAAAGATGGGTGTGTTCACA
TTCTCAGCTTTTGTACTTTTCCTGGCTACTATTCCATTTGTTACTGCTCA
AAATGTCTTCAATGATTTCGCCCATTGTGGTATGAGTGCAAAATTGAATA
GAGATTTTTCACGTATCGTGGGTGGAACAGAGGCTGAACGAAAAGAACTT
CCATGGCAAGCAGCTTTATGGGGTGGCTCTGGAAAGCCATATTGCGGTGG
AACGTTGATCAGTAGCCAATATGTGGTCACTGCTGCACACTGCGTTGATG
GTAGTAGCCCACAGTATGTTGTACTTGGTGCACATGTCTTCGGCGGTGGC
ACTGAAAATAACAGGCAAGTCCGACAAGTCGCTAGTGTAATTTCCCATGA
GAATTACAATTCTCAAACACTGGCAAACGATATTGCTTTGATAAAGTTGA
AGAGCCCAGTAGAATATAACGACTATGTCAAACCAGCTTGTGTACCAGAA
AGTGGCGATGCACCAGATCCAAATACAGAAGTTGTCATTTCTGGCTGGGG
AACAACTCAGTCTGGAGGAAGTCAGCCCAACACCCTTCGAGAAACTAAGG
TTATTATAATAAAACttattaaccctttcagtcccggagttttcacagct
actttcccagagccgtaaaatgagtttttgaatgcatttacttatgcttc
aatatctctggaatcacaccctttttcacttatagtatgaggatcatttt
gatagaaagaaatttgcaaaatgacgtcatcagcgtgtcacgtgaccgga
gaaaggcaaaaaaagatttgaaa Run BLAST on NCBI transcript from alignment at sc0000676:54909..59045+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028391 ID=TCONS_00028391|Name=TCONS_00028391|organism=Clytia hemisphaerica|type=transcript|length=4137bp|location=Sequence derived from alignment at sc0000676:54909..59045+ (Clytia hemisphaerica)
ATTTAAGTACGGTTTTAATGAATCAAGATAAATACACAAAGGCtaattac
ccagctggcacacaacgttgtttgaacgtttttctaacattcacaacgtt
catataacgttagataaacgttgaaacaacgttgtgtgccagcaggGTAG
GAGGGCCTTTCCTCAACAGACACGATGATCATACGAGCCCAACTATGCAA
TATGCATTTTTCAATGAAAGGCATCTTTAGTGTGTGTGACCTTACATTCA
TCGAGTTTTCGAGTATAAAAGAGGCAACACCTTAATATTTATCCATTACT
GAAAAGAAACAGAGATATACAGAGGTAAGTCCAAGCACacgcacaacgtt
gtttcaacgttcacctaacgttaaatggatgtcagatagacgttgaaaca
acactGTGTACCAAGAATCATTATTGCTAACATCTACCCATGGTTTTTTA
TAACATTTGCTAACAACATTTTTACCTTCATCTGAAAAgtaagctgtttc
accagtaTTGAGCCtgaattaaaataaatataaaatttcttctattttta
gaaaCTGCAAAGATGGGTGTGTTCACATTCTCAGCTTTTGTACTTTTCCT
GGCTACTATTCCATTTGTTACTGCTCAAAATGTCTTCAATGATTTCGCCC
ATTGTGGTATGAGTGCAAAATTGAATAGAGATTTTTCACGTATCGTGGGT
GGAACAGAGGCTGAACGAAAAGAACTTCCATGGCAAGCAGCTTTATGGGG
TGGCTCTGGAAAGCCATATTGCGGTGGAACGTTGATCAGTAGCCAATATG
TGGTCACTGCTGCACACTGCGTTGATGGTAGTAGCCCACAGTATGTTGTA
CTTGGTGCACATGTCTTCGGCGGTGGCACTGAAAGTAAGGAACGACCCAT
CGGggaatatatcttttatagtcaactctcactaattcgaacgtctactt
ttcgaatctttctgtaattcctacagctgaaaaaatatatacaaatacTT
TCCATAATTCAAATCTTAatataattcgaagaaaattgtTGAGAcagaat
cttttttatttgcatTACGAGACTGACTATCTATGTTTAAAGATTGGATA
AAGCTATATAATATTATAATGAAAAGTCTTTCATCAGCATATTTGCGAGT
TCTAGTTATAACGCTAATGTGTTTTTCTTCAACCAGATAACAGGCAAGTC
CGACAAGTCGCTAGTGTAATTTCCCATGAGAATTACAATTCTCAAACACT
GGCAAACGATATTGCTTTGATAAAGTTGAAGAGCCCAGTAGAATATAACG
ACTATGTCAAACCAGCTTGTGTACCAGAAAGTGGCGATGCACCAGATCCA
AATACAGAAGTTGTCATTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAG
TCAGCCCAACACCCTTCGAGAAACTAAGGTTATTATAATAAAACttatta
accctttcagtcccggagttttcacagctactttcccagagccgtaaaat
gagtttttgaatgcatttacttatgcttcaatatctctggaatcacaccc
tttttcacttatagtatgaggatcattttgatagaaagaaatttgcaaaa
tgacgtcatcagcgtgtcacgtgaccggagaaaggcaaaaaaagatttga
aaacagcaatttttttccattcatcaatgatatttttttatgaaaaaatg
gtTTAAACCCATTCATTCTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTTTC
GCCGGCCCTGCTGTATAGCACCAATTGTTATGGATCCTTGTTTTGTTTGC
TTAATTAACAATGTGCATTCACGCTATATAATCTAGAGCGTGATATTCTT
TAACAATATTTATTTGGTACTGCAAAATTCACGATGCGGCTATTGTACTG
TATGGagtttttgacaaatttcttatttttttttcttctttctacaTAGG
TGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAGAGTTACGGACAAAATGCA
ATAGATGGAACCATGTTATGCGCTTCTTCTGCTGGAAAAGATTCTTGTCA
AGTGAGTTTTTACAAAGCCCATAACCATTCCCAGATAGATATTTCTACAC
AGCCGAATTTcttaattttggctgaaaaggAAAGTACCCCACGTTTGGGT
TTTGATCGCTAGTTTCAGGCAATTTAAGTGAAGGGTTCTATTTTCGAATA
TACATTGATTCCTTATAAAATTCTCCATAGAAAAGAAACTTGGACATTTA
TTGAATTTGTTAAACTGTGTTCGCCATTGCTTGATATGTTTGAAATACAA
TTAATTCTTTTCTCTATGTGAATACTACTGAATTGCAAAATTTATATAAC
ATTTCAGAAACAAAAGTTTATGAATAAATTGTTTTACctattctttaatt
ttttctaaattacaGGGGGACAGCGGTGGCCCACTTGTCGAAAGAAAAGC
AAGTCCCAGTAATGGAGAACGTTTTTATTTGGCTGGTGTTGTTAGCTGGG
GATATGGTTGCGCAAGCCCTGGCTATCCAGGAGTTTATGCAGATGTTAGT
GCTTTGAGAAGCTGGATTGAAGGCAAAGGACGTAAggagaatattttttt
attttcatcttaaaaatgcaaaaaaagtaaaaaaccaAAACTTAATCTTt
acccagttggcacacaacgttgcttcaacgttcatctaacgttatactga
cgttgtgaacgttaaataaacgttaaaacaacgttgtgtgccagctgggt
aagtaAGTGATTATATTCATCTGGTGCCGTGGCTGTCGCCCAAGAAAACT
TCCGGAGAGAGCTTATGGAGGTATTAATGCTACGTACAATTTCCAAATAT
TGTGAGAAATGGATGATGAATCAGTTATTAAAAACCCTTTCAAATATTAC
TGGtttgactttttcgaatttGTATGTTTTTGATGAGTAGGTTAACTTGT
GTCTGCTTATTCTTTTTCACGTAGTTGTAGCAAAACCAGTGACACCGGTC
ACTCCTGGACCAGTCACTCCAGAACCAGTCACTCCCGAACCAGTCAATCC
AGGACCAGTGAACGATTACTTCAATGATTTCTCCCATTGTGGTATGAGTG
CAAAATTGAGTAGAGATTTTTCACGTATCGTGGGTGGAACAGAGGCTGAA
CGAAAAGAACTTCCATGGCAAGCAGCTTTATGGAGTGGCTCTGGAAAGCC
ATATTGCGGTGGAACGTTGATCAGTAGCCAATATGTGGTCACTGCTGCAC
ACTGCGTTGCTGGTAGTAACCCACCGAATGTTGTACTTGGTGCACATGTC
TTCGACAGTGGCACTGAAAGTAAGGAACGACCCATCGGggaatatatctt
ttatagtcaactctcactaattcgaaTGTCtacttttcgaatctttctgt
aattcttacagctgaaaaaatatatacaaatacTTTCCATAATTCAAATC
TTAatataattcgaagaaaattgtTGAGAcagaatcttttttatttgcat
TACGAGACTGACTATCTATGTTTAAAGATTGGATAAAGCTATATAATATT
ATAATGAAAAGTCTTTCATCAGCATATTTGCGAGTTCTAGTTATAACGCT
AATGTGTTTTTCTTCAACCAGATAACAGGCAAGTCCGACAAGTCGCTAGT
GTAATTTCCCATGAGAATTACAATTCTCAAACACTGGCAAACGATATTGC
TTTGATAAAGTTGAAGAGCCCAGTAGAATATAACGACTATGTCAAACCAG
CTTGTGTACCAGAAAGTGGCGATGCACCAGATCCAAATACAGAAGTTGTC
ATTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAGTCAGCCCAACACCCT
TCGAGAAACTAAGGTTATTATAATAAAACttattaaccctttcagtcccg
gagttttcacagctactttcccagagccgtaaaatgagtttttgaatgca
tttacttatgcttcaatatctctggaatcacaccctttttcacttatagt
atgaggatcattttgatagaaagaaatttgcaaaatgacgtcatcagcgt
gtcacgtgaccggagaaaggcaaaaaaagatttgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028391-exon-sc0000676-1491911889:54909..55232 | TCONS_00028391-exon-sc0000676-1491911889:54909..55232 | Clytia hemisphaerica | exon |
| TCONS_00028391-exon-sc0000676-1510915933:54909..55232 | TCONS_00028391-exon-sc0000676-1510915933:54909..55232 | Clytia hemisphaerica | exon |
| TCONS_00028391-exon-sc0000676-1575043694:54909..55232 | TCONS_00028391-exon-sc0000676-1575043694:54909..55232 | Clytia hemisphaerica | exon |
| TCONS_00028391-exon-sc0000676-1491911889:55460..55792 | TCONS_00028391-exon-sc0000676-1491911889:55460..55792 | Clytia hemisphaerica | exon |
| TCONS_00028391-exon-sc0000676-1510915933:55460..55792 | TCONS_00028391-exon-sc0000676-1510915933:55460..55792 | Clytia hemisphaerica | exon |
| TCONS_00028391-exon-sc0000676-1575043694:55460..55792 | TCONS_00028391-exon-sc0000676-1575043694:55460..55792 | Clytia hemisphaerica | exon |
| TCONS_00028391-exon-sc0000676-1491911889:58580..59045 | TCONS_00028391-exon-sc0000676-1491911889:58580..59045 | Clytia hemisphaerica | exon |
| TCONS_00028391-exon-sc0000676-1510915933:58580..59045 | TCONS_00028391-exon-sc0000676-1510915933:58580..59045 | Clytia hemisphaerica | exon |
| TCONS_00028391-exon-sc0000676-1575043694:58580..59045 | TCONS_00028391-exon-sc0000676-1575043694:58580..59045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000676 | supercontig | sc0000676:54909..59045 + |
Blast
BLAST of TCONS_00028391 vs. Swiss-Prot (Human)
Match: CEL2B (Chymotrypsin-like elastase family member 2B OS=Homo sapiens GN=CELA2B PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 6.656e-22 Identity = 62/181 (34.25%), Postives = 105/181 (58.01%), Query Frame = 3
Query: 426 CGMSAKLNRDFSRIVGGTEAERKELPWQAAL-WGGSGKPY--CGGTLISSQYVVTAAHCVDGSSPQYVVLGAHVFGGGTENNRQVRQVASVISHENYNSQTLA--NDIALIKLKSPVEYNDYVKPACVPESGDAPDPNTEVVIXXXXXXXXXXXXPNTLRETKVIIIKLINPFSPGVFTAT 953
CG+S D SR++GG EA PWQ +L + +G+ Y CGG+LI++ +V+TAAHC+ S V+LG H E+ V+ ++ H+++NS ++ NDIAL+KL +PV D ++ AC+P +G N ++GWG Q+ G+ P+ L++ +++++ S G + +T
Sbjct: 17 CGVSTYA-PDMSRMLGGEEARPNSWPWQVSLQYSSNGQWYHTCGGSLIANSWVLTAAHCISSSGIYRVMLGQHNL-YVAESGSLAVSVSKIVVHKDWNSDQVSKGNDIALLKLANPVSLTDKIQLACLPPAGTILPNNYPCYVTGWGRLQTNGALPDDLKQGQLLVVDYATCSSSGWWGST 195
The following BLAST results are available for this feature:
|
