|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028392 ID=TCONS_00028392|Name=TCONS_00028392|organism=Clytia hemisphaerica|type=transcript|length=968bp
GGTGGCCCACTTGTCGAAAGAAAAGCAAGTCCCAGTAATGGAGAACGTTT
TTATTTGGCTGGTGTTGTTAGCTGGGGATATGGTTGCGCAAGCCCTGGCT
ATCCAGGAGTTTATGCAGATGTTAGTGCTTTGAGAAGCTGGATTGAAGGC
AAAGGACTTGTAGCAAAACCAGTGACACCGGTCACTCCTGGACCAGTCAC
TCCAGAACCAGTCACTCCCGAACCAGTCAATCCAGGACCAGTGAACGATT
ACTTCAATGATTTCTCCCATTGTGGTATGAGTGCAAAATTGAGTAGAGAT
TTTTCACGTATCGTGGGTGGAACAGAGGCTGAACGAAAAGAACTTCCATG
GCAAGCAGCTTTATGGAGTGGCTCTGGAAAGCCATATTGCGGTGGAACGT
TGATCAGTAGCCAATATGTGGTCACTGCTGCACACTGCGTTGCTGGTAGT
AACCCACCGAATGTTGTACTTGGTGCACATGTCTTCGACAGTGGCACTGA
AAATAACAGGCAAGTCCGACAAGTCGCTAGTGTAATTTCCCATGAGAATT
ACAATTCTCAAACACTGGCAAACGATATTGCTTTGATAAAGTTGAAGAGC
CCAGTAGAATATAACGACTATGTCAAACCAGCTTGTGTACCAGAAAGTGG
CGATGCACCAGATCCAAATACAGAAGTTGTCATTTCTGGCTGGGGAACAA
CTCAGTCTGGAGGAAGTCAGCCCAACACCCTTCGAGAAACTAAGGTTATT
ATAATAAAACttattaaccctttcagtcccggagttttcacagctacttt
cccagagccgtaaaatgagtttttgaatgcatttacttatgcttcaatat
ctctggaatcacaccctttttcacttatagtatgaggatcattttgatag
aaagaaatttgcaaaatgacgtcatcagcgtgtcacgtgaccggagaaag
gcaaaaaaagatttgaaa Run BLAST on NCBI transcript from alignment at sc0000676:57383..59045+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028392 ID=TCONS_00028392|Name=TCONS_00028392|organism=Clytia hemisphaerica|type=transcript|length=1663bp|location=Sequence derived from alignment at sc0000676:57383..59045+ (Clytia hemisphaerica)
GGTGGCCCACTTGTCGAAAGAAAAGCAAGTCCCAGTAATGGAGAACGTTT
TTATTTGGCTGGTGTTGTTAGCTGGGGATATGGTTGCGCAAGCCCTGGCT
ATCCAGGAGTTTATGCAGATGTTAGTGCTTTGAGAAGCTGGATTGAAGGC
AAAGGACGTAAggagaatatttttttattttcatcttaaaaatgcaaaaa
aagtaaaaaaccaAAACTTAATCTTtacccagttggcacacaacgttgct
tcaacgttcatctaacgttatactgacgttgtgaacgttaaataaacgtt
aaaacaacgttgtgtgccagctgggtaagtaAGTGATTATATTCATCTGG
TGCCGTGGCTGTCGCCCAAGAAAACTTCCGGAGAGAGCTTATGGAGGTAT
TAATGCTACGTACAATTTCCAAATATTGTGAGAAATGGATGATGAATCAG
TTATTAAAAACCCTTTCAAATATTACTGGtttgactttttcgaatttGTA
TGTTTTTGATGAGTAGGTTAACTTGTGTCTGCTTATTCTTTTTCACGTAG
TTGTAGCAAAACCAGTGACACCGGTCACTCCTGGACCAGTCACTCCAGAA
CCAGTCACTCCCGAACCAGTCAATCCAGGACCAGTGAACGATTACTTCAA
TGATTTCTCCCATTGTGGTATGAGTGCAAAATTGAGTAGAGATTTTTCAC
GTATCGTGGGTGGAACAGAGGCTGAACGAAAAGAACTTCCATGGCAAGCA
GCTTTATGGAGTGGCTCTGGAAAGCCATATTGCGGTGGAACGTTGATCAG
TAGCCAATATGTGGTCACTGCTGCACACTGCGTTGCTGGTAGTAACCCAC
CGAATGTTGTACTTGGTGCACATGTCTTCGACAGTGGCACTGAAAGTAAG
GAACGACCCATCGGggaatatatcttttatagtcaactctcactaattcg
aaTGTCtacttttcgaatctttctgtaattcttacagctgaaaaaatata
tacaaatacTTTCCATAATTCAAATCTTAatataattcgaagaaaattgt
TGAGAcagaatcttttttatttgcatTACGAGACTGACTATCTATGTTTA
AAGATTGGATAAAGCTATATAATATTATAATGAAAAGTCTTTCATCAGCA
TATTTGCGAGTTCTAGTTATAACGCTAATGTGTTTTTCTTCAACCAGATA
ACAGGCAAGTCCGACAAGTCGCTAGTGTAATTTCCCATGAGAATTACAAT
TCTCAAACACTGGCAAACGATATTGCTTTGATAAAGTTGAAGAGCCCAGT
AGAATATAACGACTATGTCAAACCAGCTTGTGTACCAGAAAGTGGCGATG
CACCAGATCCAAATACAGAAGTTGTCATTTCTGGCTGGGGAACAACTCAG
TCTGGAGGAAGTCAGCCCAACACCCTTCGAGAAACTAAGGTTATTATAAT
AAAACttattaaccctttcagtcccggagttttcacagctactttcccag
agccgtaaaatgagtttttgaatgcatttacttatgcttcaatatctctg
gaatcacaccctttttcacttatagtatgaggatcattttgatagaaaga
aatttgcaaaatgacgtcatcagcgtgtcacgtgaccggagaaaggcaaa
aaaagatttgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028392-exon-sc0000676-1491911889:57383..57539 | TCONS_00028392-exon-sc0000676-1491911889:57383..57539 | Clytia hemisphaerica | exon |
| TCONS_00028392-exon-sc0000676-1510915933:57383..57539 | TCONS_00028392-exon-sc0000676-1510915933:57383..57539 | Clytia hemisphaerica | exon |
| TCONS_00028392-exon-sc0000676-1575043694:57383..57539 | TCONS_00028392-exon-sc0000676-1575043694:57383..57539 | Clytia hemisphaerica | exon |
| TCONS_00028392-exon-sc0000676-1491911889:57933..58277 | TCONS_00028392-exon-sc0000676-1491911889:57933..58277 | Clytia hemisphaerica | exon |
| TCONS_00028392-exon-sc0000676-1510915933:57933..58277 | TCONS_00028392-exon-sc0000676-1510915933:57933..58277 | Clytia hemisphaerica | exon |
| TCONS_00028392-exon-sc0000676-1575043694:57933..58277 | TCONS_00028392-exon-sc0000676-1575043694:57933..58277 | Clytia hemisphaerica | exon |
| TCONS_00028392-exon-sc0000676-1491911889:58580..59045 | TCONS_00028392-exon-sc0000676-1491911889:58580..59045 | Clytia hemisphaerica | exon |
| TCONS_00028392-exon-sc0000676-1510915933:58580..59045 | TCONS_00028392-exon-sc0000676-1510915933:58580..59045 | Clytia hemisphaerica | exon |
| TCONS_00028392-exon-sc0000676-1575043694:58580..59045 | TCONS_00028392-exon-sc0000676-1575043694:58580..59045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000676 | supercontig | sc0000676:57383..59045 + |
Blast
BLAST of TCONS_00028392 vs. Swiss-Prot (Human)
Match: CEL2B (Chymotrypsin-like elastase family member 2B OS=Homo sapiens GN=CELA2B PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 5.039e-23 Identity = 63/181 (34.81%), Postives = 108/181 (59.67%), Query Frame = 1
Query: 271 CGMSAKLSRDFSRIVGGTEAERKELPWQAAL-WSGSGKPY--CGGTLISSQYVVTAAHCVAGSNPPNVVLGAHVFDSGTENNRQVRQVASVISHENYNSQTLA--NDIALIKLKSPVEYNDYVKPACVPESGDAPDPNTEVVIXXXXXXXXXXXXPNTLRETKVIIIKLINPFSPGVFTAT 798
CG+S + D SR++GG EA PWQ +L +S +G+ Y CGG+LI++ +V+TAAHC++ S V+LG H E+ V+ ++ H+++NS ++ NDIAL+KL +PV D ++ AC+P +G N ++GWG Q+ G+ P+ L++ +++++ S G + +T
Sbjct: 17 CGVST-YAPDMSRMLGGEEARPNSWPWQVSLQYSSNGQWYHTCGGSLIANSWVLTAAHCISSSGIYRVMLGQHNLYVA-ESGSLAVSVSKIVVHKDWNSDQVSKGNDIALLKLANPVSLTDKIQLACLPPAGTILPNNYPCYVTGWGRLQTNGALPDDLKQGQLLVVDYATCSSSGWWGST 195
The following BLAST results are available for this feature:
|
