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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028396 ID=TCONS_00028396|Name=TCONS_00028396|organism=Clytia hemisphaerica|type=transcript|length=837bp
CTTTTTCCCCGACGAATaaaaaccccgactaaataaaactctggCATTTT
TCACCGATAAGGTATGTTCTTTTGACATTTCTGTACCTTTTTTCGTTAGG
TCTAATATAAAACAACCAAAAAGAAACGAAGATGGCACATCGTTtgcttg
ttttgatgtttttgactGCAGTTTATCATAACTGCAATGCATTTCGCTGT
TATAACAAAGTTACGACCAATGGGCAGACCGAATCATCTGGAACAATTGA
CTGCATGAaTATGCCGAACTTCGCAACCAGTTCACCTCAATGTGTGTATT
ATATGGAAGCATCGGTTGATGGCTTGCCCTCTACTCAAGTACAAACATGT
CTCACTGAAGAGGTTAAAGGGCAATGTGGTTTAACCTTTTCTAGGGGCAA
CGAAAAAGTTAAGGTCTGTTGCTGTGATAAACCATTATGTAACGATTATG
ACTTCGTAACTACTTGTGGTTCATGTGTTATTCAAACAAGTCTGCTTTTT
GTATCCTTCGCTTTTATCATTGGCAAACTAATGGCTTGAAGCTGAAATGA
CACTGCACTCGCTGAAATTAAAACATTTAAGCAGAAGAAAAACCAGGATT
AgttttacaccttttttatGTTTCTCGCACCCTGTTATATATCTAAGGTA
TTGCAataatttaagatttttgtacTTAATTAAAGGACGTAGAGTTTAAC
TGATTTCTCAGTAGAAATACACGCTTTACTCAACGTTACTCTTGTCGTTG
AAGTGGTTCAATATCTACAAAACGGAGATCTCTAGTCTATTTAACTCTTA
TTATCGGGGGAGCTTGGCTTAATTTTGCTAATAATTC Run BLAST on NCBI protein sequence of TCONS_00028396-protein >TCONS_00028396-protein ID=TCONS_00028396-protein|Name=TCONS_00028396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MAHRLLVLMFLTAVYHNCNAFRCYNKVTTNGQTESSGTIDCMNMPNFATS
SPQCVYYMEASVDGLPSTQVQTCLTEEVKGQCGLTFSRGNEKVKVCCCDK
PLCNDYDFVTTCGSCVIQTSLLFVSFAFIIGKLMA Run BLAST on NCBI transcript from alignment at sc0000676:124881..126225+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028396 ID=TCONS_00028396|Name=TCONS_00028396|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at sc0000676:124881..126225+ (Clytia hemisphaerica)
CTTTTTCCCCGACGAATaaaaaccccgactaaataaaactctggCATTTT
TCACCGATAAGGTATGTTCTTTTGACATTTCTGTACCTTTTTTCGTTAGG
TCTAATATAAAACAACCAAAAAGAAACGAAGATGGCACATCGTTtgcttg
ttttgatgtttttgactGCAGTTTATCATAACTGCAATGCATTTCGCTGT
TATAACAAAGTTACGACCAATGGGCAGACCGAATCATCTGGAACAATTGA
CTGCATGAGTAAGACCCCCCTTGTATATCCCATGTtaatcgcttcgtagt
acactctgtgcgcattgtgtGTTTGTTAAAATAGTTCCCTTCATCGCAGA
GATCTCCGTCTGCGATGAAGTCTGATTTGTAAATAGTAACACTTATCTCA
TCGTTTCCCCTCTCACCAAagctccatcgcagcggtcggtttgaaaaatc
tcaacgagaaaagacaatgacaggagaccctctacggcaattaATCTTGA
AATTAGCCGTATATAATGGGTCTGTGTACCAGAAATTGTATACAGTGTGT
CTGGAAAAACAGCGGAACAGTTTTTGTCAGTTTATTTCTTTTTCCAAGCT
CAGCACAACCTTTCCATACCTAAGAATGGCTATGTTTGTATAACTAACTC
CCTTATTACAAGCCAAAAAAATCCTATATGTTATTTTACTGAGCACAGCT
CTTTGAAGTGCGACAGATTCCACGTTAAATTCATTGTTGTtctgttattt
atttttattttctcagaTATGCCGAACTTCGCAACCAGTTCACCTCAATG
TGTGTATTATATGGAAGCATCGGTTGATGGCTTGCCCTCTACTCAAGTAC
AAACATGTCTCACTGAAGAGGTTAAAGGGCAATGTGGTTTAACCTTTTCT
AGGGGCAACGAAAAAGTTAAGGTCTGTTGCTGTGATAAACCATTATGTAA
CGATTATGACTTCGTAACTACTTGTGGTTCATGTGTTATTCAAACAAGTC
TGCTTTTTGTATCCTTCGCTTTTATCATTGGCAAACTAATGGCTTGAAGC
TGAAATGACACTGCACTCGCTGAAATTAAAACATTTAAGCAGAAGAAAAA
CCAGGATTAgttttacaccttttttatGTTTCTCGCACCCTGTTATATAT
CTAAGGTATTGCAataatttaagatttttgtacTTAATTAAAGGACGTAG
AGTTTAACTGATTTCTCAGTAGAAATACACGCTTTACTCAACGTTACTCT
TGTCGTTGAAGTGGTTCAATATCTACAAAACGGAGATCTCTAGTCTATTT
AACTCTTATTATCGGGGGAGCTTGGCTTAATTTTGCTAATAATTC Coding sequence (CDS) from alignment at sc0000676:124881..126225+ >TCONS_00028396 ID=TCONS_00028396|Name=TCONS_00028396|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000676:124881..126225+ (Clytia hemisphaerica)
ATGGCACATCGTTtgcttgttttgatgtttttgactGCAGTTTATCATAA
CTGCAATGCATTTCGCTGTTATAACAAAGTTACGACCAATGGGCAGACCG
AATCATCTGGAACAATTGACTGCATGAaTATGCCGAACTTCGCAACCAGT
TCACCTCAATGTGTGTATTATATGGAAGCATCGGTTGATGGCTTGCCCTC
TACTCAAGTACAAACATGTCTCACTGAAGAGGTTAAAGGGCAATGTGGTT
TAACCTTTTCTAGGGGCAACGAAAAAGTTAAGGTCTGTTGCTGTGATAAA
CCATTATGTAACGATTATGACTTCGTAACTACTTGTGGTTCATGTGTTAT
TCAAACAAGTCTGCTTTTTGTATCCTTCGCTTTTATCATTGGCAAACTAA
TGGCTTGAATGGCACATCGTTtgcttgttttgatgtttttgactGCAGTT
TATCATAACTGCAATGCATTTCGCTGTTATAACAAAGTTACGACCAATGG
GCAGACCGAATCATCTGGAACAATTGACTGCATGAaTATGCCGAACTTCG
CAACCAGTTCACCTCAATGTGTGTATTATATGGAAGCATCGGTTGATGGC
TTGCCCTCTACTCAAGTACAAACATGTCTCACTGAAGAGGTTAAAGGGCA
ATGTGGTTTAACCTTTTCTAGGGGCAACGAAAAAGTTAAGGTCTGTTGCT
GTGATAAACCATTATGTAACGATTATGACTTCGTAACTACTTGTGGTTCA
TGTGTTATTCAAACAAGTCTGCTTTTTGTATCCTTCGCTTTTATCATTGG
CAAACTAATGGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028396-exon-sc0000676-1491911889:124881..125138 | TCONS_00028396-exon-sc0000676-1491911889:124881..125138 | Clytia hemisphaerica | exon |
| TCONS_00028396-exon-sc0000676-1510915933:124881..125138 | TCONS_00028396-exon-sc0000676-1510915933:124881..125138 | Clytia hemisphaerica | exon |
| TCONS_00028396-exon-sc0000676-1575043694:124881..125138 | TCONS_00028396-exon-sc0000676-1575043694:124881..125138 | Clytia hemisphaerica | exon |
| TCONS_00028396-exon-sc0000676-1491911889:125647..126225 | TCONS_00028396-exon-sc0000676-1491911889:125647..126225 | Clytia hemisphaerica | exon |
| TCONS_00028396-exon-sc0000676-1510915933:125647..126225 | TCONS_00028396-exon-sc0000676-1510915933:125647..126225 | Clytia hemisphaerica | exon |
| TCONS_00028396-exon-sc0000676-1575043694:125647..126225 | TCONS_00028396-exon-sc0000676-1575043694:125647..126225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000676 | supercontig | sc0000676:124881..126225 + |
Blast
The following BLAST results are available for this feature:
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