TCONS_00028413 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00028413
Unique Name	TCONS_00028413
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1222

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000676:174527..180561-
coding sequence from alignment at sc0000676:174527..180561-

transcript sequence

>TCONS_00028413 ID=TCONS_00028413|Name=TCONS_00028413|organism=Clytia hemisphaerica|type=transcript|length=1222bp
ctagacaatGTAGCAAACATGgataaaaaattaatagaaaTCAAACAATG
GCTAACAATTACTCAGGGAAACAACCCCATGGCAATGTTCAATTAGCTTA
CAACCCTGGACAAGCACAACATTATGCTCAACCTTCATCATCCTCGGGTA
GACCACAAGTTGAATCAAaACCAAGACAGGCTGTAGCAGCGCCACAGCCG
CCACCACAGCAAACACATCAACACCAACACGGTGGCCATGCAAGTTATCA
GAGTAAATACGGTGAGATGTTGAATTTTATTGAAGAAATTGGAAAGGAGG
TACGACCCACGTATGCTGGAAGTAAAATGGCTCAAGAGCGCCTGAAGAAA
AATATCATGCATGCACGAGCTTTGGTTAGAGAATGTTTGGCAGAAGTGGA
AAAGAGTGCACGACAATGAGGTTGTAGTCGGTGAAGACTGGTTGTTTCCA
GATGTCAGTGAAAAAAGTGCACACTTAAAGTAAATGGAATTTTAGGTGct
aaacttttttagtttttttttcaagtattttttcattaattttgtaCATA
AAGTAGGCTTAAACAAGAAAATGCATTCATTGCATCTTAAAAGGATTTCA
TAAGAGAATCAATTTCAATTGTTGTTTTTAGTCCATTTATCAAAGTTCAA
CGTGAAATTCTGACTTTATCAGTCGAAAAGTTttctcgaaaatatttttt
taattcgtgCTAATCGCTCCTCATATTATTATCAGTTTAAGCAActtttt
ttgtgttgttttttatcctctttttctaaaaattttcctCTATTCTCTTT
TGTTATTGCATTTTGATGAATAATTCAAGAGAATAACTTTTGAAAAGTCC
ATCACAGGTTTAAAAAACTGCATAAAAAACCTTTGATATATAGATACTCT
TTTTAGATTTGGTTTTGTCTCTTTTTGATGGGGAATGATGGACGGGCTTc
ggaaatttaaagatttttacatCACACTCATTAACGGAAATTCTGTTATT
TATATTGATATTATCTAGGAACCACTTTAATATAATTTAGGTAAGTAttt
aaaaagaatatttcaatattAAATTGATCAACTGACGTATTTTAAATATA
AAGACAAAGGTTAAAGTACAACCATCAGTGTTTCAACTTCACAAAATTGT
CTTCTTATTATTTTTCCTGTCATAAATTCTCGACTCGTGCAATTGACTTA
TGGATAAATTTACTTCTTGCGT

Run BLAST on NCBI

protein sequence of TCONS_00028413-protein

>TCONS_00028413-protein ID=TCONS_00028413-protein|Name=TCONS_00028413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MANNYSGKQPHGNVQLAYNPGQAQHYAQPSSSSGRPQVESKPRQAVAAPQ
PPPQQTHQHQHGGHASYQSKYGEMLNFIEEIGKEVRPTYAGSKMAQERLK
KNIMHARALVRECLAEVEKSARQ

Run BLAST on NCBI

transcript from alignment at sc0000676:174527..180561-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00028413 ID=TCONS_00028413|Name=TCONS_00028413|organism=Clytia hemisphaerica|type=transcript|length=6035bp|location=Sequence derived from alignment at sc0000676:174527..180561- (Clytia hemisphaerica)
CTAGACAATGTAGCAAACATGGTAAGTATAAGCATACTGTGCTTTTATTC
GGCTAAAAAAAATTTTGCGTCGGGAAAACTTTTTCAAACTTTCAGCAATG
ATTGACTGTGACAATGAAAATTAATATCCAACACATTTTTTATCTTCTTA
CCTTCTTCATCTTCAATGAAGCACTCAAAGTTTACTGAATTTAAGCAGGA
TCCTGGACAGTTCCCTAACTGTCCTTATCTTTAATAAACCCTAGCAGCCA
GTATAAACGGAATAGATGTTTTGGCGAATGCGACAGTCTTTTAAATAACT
AATTACTCCACAGCAGTTACCTAGAGACAAGATAATTTATCATGTTTTTA
TTGGCTGAGGCCGTGAGGGAAAGTAATACATATGGAGTAATTAGTTATTC
AAAAGACTGTCGTATTTGCCAAAACATCTAAGATTATCTTGTCCTTAAGT
AACAGCTGTGTTGTAGAAGACAAATCAGTAATCTGACATTATTATATACT
TTCATGTCTACAACAGGATTTCTCTGAAGTAGTTAAAAACTAAACAAAAG
AAAAAACAACTGGAGTAAACATAATGCGGTCTCCTTATGATTAAGGAAGA
ACTATTGAGCCTAGCTAGAGTATCAGCCTTGATGTATAGCTAACTACCTT
ATTGGTATTATATTTCATGTGTATAGTCATCCGGGGTAATTACGGGACGA
AATTCACTAACCTTTCAAAATCTCAGAATATACAACAGCTCTTGCTGCCA
TATTTTGTCAAAATATTAAGAAGTTGTTTATCTTGCCTAATCCCAAATGG
TTTGGAGCTATGACCTATCATTCTCGCAAAATTTTTGTGAATAGGTGTGA
AATCTTTTGTGAATAGGTGTCAGGTAGGAACATTTGACGAGTTCCTGTGT
ACGCCGTGTAAAAAACAGTAAAAAAAATCATAACAACACTCATTTAAAAA
AAATACATACACGGCGTACAGGAACTCGTCAAATGTTCCTACCTGACACC
TATTCACAAAAGATTTTATATTGGACTGGCTGAACCCAAATTTAAGAAAC
GCTTCGCAAACCACAAGTCTTCATTCGCAAATGAGAAGTACGAAAAGGAG
ACAGAACTTTCTAAGGAAATTTGGAGGTTGAAACGTAAAAACCGACACCC
AAAGATTACTTGGAAAACAGTCTGTCGTTGTCCGCCCTTCAACCGTGCCT
CGGTAAAATGTTCACTTTGTCTCAGTGAAAAATTTGAAATTGCAACATTC
AACCAGCCCGACAAGCTGTTGAACTCCAGAAATGAACTGATTTCGAAATG
CCGCCACGTGAACAAGTTCAGGCTAAAACAACACGATTCGAAAGACTGAC
GTCAATTGTTGTCGAAAGAAGCCAGTACATTGTTCTTCGTAAGCATTCAA
AACGAACTTTAGTTTTTTTAAAATTTTATTTTCAACTGATGATCGTCTCC
ACGGCGTGAAACTATTAGTTTTGAAATAAAACTCATTAACTTCATTCGAC
AATAGTGAATAGGTGTCCCATAATCACCCCATGATTTGGGGTAAATACGG
GACACCCCTGGGTAATTATGGGACGCGTCTCGTAATTACCCCTCACTGCT
TTTGCTTGAATGGGATAAGAACGGTACATATTTTAAACTTTAAATAATGT
TCAAAATAAGTGAAATTTAAGGAAAGGCAAGACGTTTTTTGGGCAAGAAC
TAAGATTTTCAGCAACATTTTTTTCTTTTTTAAAGTACTAGAAATGCTAT
ACAACAACACAAAGAAAATGATTAATGAAAGAACAACGAAGTAAAGAATG
TATATATAATGTCTGTTGTTTTCTATTTATCCTTTTATACTAAATTTCGC
GATTGCCAGTTTCTGGAAATTTTGGCCTGTATTAAATTTCGCGATTCACT
AAATTGGGCATTTTCAAAAAGTGGGAATAAAGAAAGAAAATGACTGATTT
CGCTTGAAACACAAAGTATTGGGTGTAAACATACCAAAAATAGTAACGAA
ACTAGTGACAAAAATNATGATTTCACTTGAAACACAAAGTATTGGGTGTA
AACATACCAAAAATAGTAACGAAACTAGTGACAAAAATAGTAACAGTGTA
ACAAATAAGTGTTTTCAATTTTCGACCTATTTTGAAAATTTTTCGCAGGT
ATTTAATTTAGCGATTTTGTATTTTTGAAAAATTTATACGGTATTAAATT
TCGCGAAATTTGACCTAAAAAATTGCAAAATTTTAAGTACCCGCGAAATT
TTGAAACACGCAAAATATAATATAATACCAATAAGTTCACTTCACATATA
TAAAGCTACGTTTTATTGCAAACAAATCATGTCATTTTCACTACCCCTCA
GTACTGTGACAAAAATTTTGTAACAATCTTAAAAACTAACCTTACCTTTC
TTTATTGTATTAAATTTTTTTCCCAAATTCACTCATTCACGCAATTTTTG
TTCACGCAAAGACAGTGTAGTTTTCAGATCTTTGGTTTAGAGGCTTGAAT
ATGAAAAGAAATAAAACTGATTCAGTATCAGCCCTTACTGTATTGGCATT
ATATTTTGGCCTTTTGGTAGAAATTAGGCGCCAGCCTAAAAAAAGGCCAA
AGTAAAATAAGGCAGAATGAGGACCAGCAAAAATCAAATGATTTGATACT
TGAAAAGCACTTATGAAGTCTCAAATATTTAATAAAATAACTTTAACCCA
GTTTATCTTTAATTTTGAAGGATAAAAAATTAATAGAAATCAAACAATGG
CTAACAATTACTCAGGGAAACAACCCCATGGCAATGTTCAATTAGCTTAC
AACCCTGGACAAGCACAACATTATGCTCAACCTTCATCATCCTCGGGTAG
ACCACAAGTTGAATCAAGTAAGTAGTATGATCTCTTTGATATTTTTTTCA
ATATAATAAAGGTGAGACCAATTTAATTTGTTGTTCTACGGGCAGATCGT
TAGCAAAATATGAGTCGGTCCCAAGTAATATAAAAATAAGATTTTCATTA
ATAAAGGAAGGTAATTAGGCTTTATAAGTAATATTTTCAAAAATTCATCA
TTCATCTTTGATGGAGTTTGTAATAAAATCTTTTGTGCATAGAATTCATG
ATTCTAGATTCGTTTCAACTTTTTTTTAAGTGTAAATTTTTTAAATGACT
TATTGTTAGAAAATTGAGGCATAGGAAATTCAATATTGTTATTTTTTCGT
TTGCGGCAAATGCTAGGTCGGTCGCGCCCGTAGAACAACAAATTGAATTA
GTCTCGCCTAAACAAAACGTTTTAGTGAGTTAAACCAGAGCTTGTTTTTT
CCTCTACTGCTTTAAAAGTGCATTATGTAAGACTTAATCTCTTTTGTTGG
GGAGAATACATCCTTTTTATTTATTTTAGAATATTCTTTTTTATGTTCTT
TATACAAAAATCAATTTTTCAGAACCAAGACAGGCTGTAGCAGCGCCACA
GCCGCCACCACAGCAAACACATCAACACCAACACGGTGGCCATGCAAGTT
ATCAGAGTAAATACGGTGAGATGTTGAATTTTATTGAAGAAATTGGAAAG
GAGGTACGACCCACGTATGCTGGAAGTAAAATGGCTCAAGAGCGCCTGAA
GAAAAGTAAGTACTTTGTTTGTTATGGAAGCTTGCTTTTGTTCATTTTCA
CAGGAAAAATTGTTGCTTTTGTACTAAATTATTTCAATTTTTCACCACTA
ATTTATTTACTTTATCAGATCACCTTTTTTTACTGTCTTTATCAAAAATC
ACGATTCGGTTAGAACATCATCAAAACACTGTAATTGCCTACAAGATTTA
AATTTGGCTTAAAATCGTAAAAGGGGAGTTTTATCCCTAAAACACGAGAA
TATAAAGTATATAAATTTTAGCATTTGTTCTAAGATTATGTTATGATCTG
TACAGTTTGCAAATTTATGACCGGACCATAAAAGGCTAGTTCAGTACATT
AAAGTTACCGTTTTCTCTGATCAGACTAACAAGTTTTTCTAGTAAATAAC
AGCATTAAAAGCCAGCAACTTAAGTCACAAGTATTTTTCCTAGGGTAAAT
TAGTGTTTAGATATATGTCGAGGTTTTTTTGATAGATAAGTTCTGTACAT
GAAGTCTCCATAACTCAAATACGCATGGTAACACAAATCTGTTCCAATTC
TTAGGTATATTTCGAGTTTTAACTTAGGAAGAGACAATAAAACTTGTTCG
AGTTAATGAGATATTCGAGTTATAGAGGTTCGAGTTAAAGAGACGCTGTA
TAAAGAGAAAAGTTGAATGATCACTAAAGAGCTTGGAAGATGAAAACAAT
AAGTGTTCTCTTTAAATTTATTTATTTCTTTTTCATTTTTACTGATGATG
GTGATCGGATGACACCGAAACGTCTAAATATATATGTTTAAATTTTATTC
AAATAAAATGAAAACGTTTAGTGAAAAATCTACAATACATTGTATTCCTT
GAAGATTGCTTCAGCATGAAACAACGTCTAGCAAAATGTTGTAAATTCTT
TATTTCTCGATATTTCTCTCGAATTTTTTCGGATTTTCTTTAGCACTTTG
TGATTCTATTTATTTTACTGTTGCTTTTCAGATATCATGCATGCACGAGC
TTTGGTTAGAGAATGTTTGGCAGAAGTGGAAAAGAGTGCACGACAATGAG
GTTGTAGTCGGTGAAGACTGGGTAATGTAAAGGATATTTTTATGTCATTT
TTTTCGAAGATGTTTATTTATAAAAGTCTTTATTCATTATTACTGCACTG
GTCCACAAACTATAATACTCTTTTTAAGGTCAATTTTTATCAAGAAGTTA
TGTTCAAGACAAATTTTAGTAAAACATTCACATTCTGAAATTTCTTTAAA
TTCAACCTTAACAAATTTTTAACGAAATGGGGCACAGTTTATTAATAACG
GTGCACTGACTGTATATGACAGTTCTGTATGCCAAGTAAAATGTGAAACT
CATTGTATCAAACTCCATTTGCTTTAAGTGTTCATCTTTTTCACTTTACC
ATATGTGTTTTGTATAAGAATATCCAATATTTTTATGCCTTCGGATGTTC
TTAACTTTTTAAGTATTGAGCCTAAAATGTTCTTAACATTTTCTTATTTT
CACCATTTTGTGGGTCTTTCTGTCCATAGAAATTGGATGTTTAAGAAACT
GAAAAGCCTTAAAATGTTCTTAACTTGTTCTTAATAATTTGACCATCGAG
GCCTTATGTTCTTATATAATTTGTTCTTATAAAAAGGTATTATTCCCTTG
AGAGTTGTTTCCAGATGTCAGTGAAAAAAGTGCACACTTAAAGTAAATGG
AATTTTAGGTGCTAAACTTTTTTAGTTTTTTTTTCAAGTATTTTTTCATT
AATTTTGTACATAAAGTAGGCTTAAACAAGAAAATGCATTCATTGCATCT
TAAAAGGATTTCATAAGAGAATCAATTTCAATTGTTGTTTTTAGTCCATT
TATCAAAGTTCAACGTGAAATTCTGACTTTATCAGTCGAAAAGTTTTCTC
GAAAATATTTTTTTAATTCGTGCTAATCGCTCCTCATATTATTATCAGTT
TAAGCAACTTTTTTTGTGTTGTTTTTTATCCTCTTTTTCTAAAAATTTTC
CTCTATTCTCTTTTGTTATTGCATTTTGATGAATAATTCAAGAGAATAAC
TTTTGAAAAGTCCATCACAGGTTTAAAAAACTGCATAAAAAACCTTTGAT
ATATAGATACTCTTTTTAGATTTGGTTTTGTCTCTTTTTGATGGGGAATG
ATGGACGGGCTTCGGAAATTTAAAGATTTTTACATCACACTCATTAACGG
AAATTCTGTTATTTATATTGATATTATCTAGGAACCACTTTAATATAATT
TAGGTAAGTATTTAAAAAGAATATTTCAATATTAAATTGATCAACTGACG
TATTTTAAATATAAAGACAAAGGTTAAAGTACAACCATCAGTGTTTCAAC
TTCACAAAATTGTCTTCTTATTATTTTTCCTGTCATAAATTCTCGACTCG
TGCAATTGACTTATGGATAAATTTACTTCTTGCGT

Coding sequence (CDS) from alignment at sc0000676:174527..180561-

>TCONS_00028413 ID=TCONS_00028413|Name=TCONS_00028413|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000676:174527..180561- (Clytia hemisphaerica)
ATATCATGCATGCACGAGCTTTGGTTAGAGAATGTTTGGCAGAAGTGGAA
AAGAGTGCACGACAATGAAACCAAGACAGGCTGTAGCAGCGCCACAGCCG
CCACCACAGCAAACACATCAACACCAACACGGTGGCCATGCAAGTTATCA
GAGTAAATACGGTGAGATGTTGAATTTTATTGAAGAAATTGGAAAGGAGG
TACGACCCACGTATGCTGGAAGTAAAATGGCTCAAGAGCGCCTGAAGAAA
AATGGCTAACAATTACTCAGGGAAACAACCCCATGGCAATGTTCAATTAG
CTTACAACCCTGGACAAGCACAACATTATGCTCAACCTTCATCATCCTCG
GGTAGACCACAAGTTGAATCAAATATCATGCATGCACGAGCTTTGGTTAG
AGAATGTTTGGCAGAAGTGGAAAAGAGTGCACGACAATGAAACCAAGACA
GGCTGTAGCAGCGCCACAGCCGCCACCACAGCAAACACATCAACACCAAC
ACGGTGGCCATGCAAGTTATCAGAGTAAATACGGTGAGATGTTGAATTTT
ATTGAAGAAATTGGAAAGGAGGTACGACCCACGTATGCTGGAAGTAAAAT
GGCTCAAGAGCGCCTGAAGAAAAATGGCTAACAATTACTCAGGGAAACAA
CCCCATGGCAATGTTCAATTAGCTTACAACCCTGGACAAGCACAACATTA
TGCTCAACCTTCATCATCCTCGGGTAGACCACAAGTTGAATCAAATATCA
TGCATGCACGAGCTTTGGTTAGAGAATGTTTGGCAGAAGTGGAAAAGAGT
GCACGACAATGAAACCAAGACAGGCTGTAGCAGCGCCACAGCCGCCACCA
CAGCAAACACATCAACACCAACACGGTGGCCATGCAAGTTATCAGAGTAA
ATACGGTGAGATGTTGAATTTTATTGAAGAAATTGGAAAGGAGGTACGAC
CCACGTATGCTGGAAGTAAAATGGCTCAAGAGCGCCTGAAGAAAAATGGC
TAACAATTACTCAGGGAAACAACCCCATGGCAATGTTCAATTAGCTTACA
ACCCTGGACAAGCACAACATTATGCTCAACCTTCATCATCCTCGGGTAGA
CCACAAGTTGAATCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016095	XLOC_016095	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00028413-protein	TCONS_00028413-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000676	supercontig	sc0000676:174527..180561 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.73851	2.38083	2.23914	1.85935	5.0416	3.98394	4.70836	5.60172	3.8576	4.52649	2.24165	2.03251	1.06559	1.4228	1.12641	1.11583	2.11919	2.1721	0.405523	0.594091	3.54084	3.77803	3.14927	2.86314	0.573411	0.36554	7.00936	4.35436	2.28644	2.58835

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR017266	DOC_1/2

Blast

[Close]

BLAST of TCONS_00028413 vs. Swiss-Prot (Human)
Match: CDKA1 (Cyclin-dependent kinase 2-associated protein 1 OS=Homo sapiens GN=CDK2AP1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.300e-21
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 3

Query:  249 QSKYGEMLNFIEEIGKEVRPTYAGSKMAQERLKKNIMHARALVRECLAEVEKSAR 413
            QSKY E+L  IEE+GKE+RPTYAGSK A ERLK+ I+HAR LVRECLAE E++AR
Sbjct:   60 QSKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNAR 114

The following BLAST results are available for this feature:

BLAST of TCONS_00028413 vs. Swiss-Prot (Human)

BLAST of TCONS_00028413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDKA1	4.300e-21	72.73	Cyclin-dependent kinase 2-associated protein 1 OS=...	[more]

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TCONS_00028413 (transcript) - C. hemisphaerica