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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028443 ID=TCONS_00028443|Name=TCONS_00028443|organism=Clytia hemisphaerica|type=transcript|length=1121bp
TCATCAATCTCAAACAGTTTTGTGGATTTTTTCCTGCATGTACAGTTACA
ACAATACATGCCAATGTTATAGATTTTATTACGCAATGTGTAGACAAGAG
GGTCTGAAATAGAACGCATTAAGAGGAAAACAAACATTAAAACATCCATG
GTGGTATGAAGGTTATTAATTCCAGACTTTGTGTGTAATAATTTAATGAC
CGGAAGAATGGTACATAAGATATATGATATCACAATACTGCAACAACTAA
AAGTGCTTCTCCGTTCTCGCTCTTTCTGGCGTCTATGATCAGAATCGTCT
GTAATACTATTAGTATTGGTTCGAAAAGCTATTCCCATCATGTGGAAAAT
AAAAGTGTATGTGACAATAAGAATAATGTACGATGTGATCATCAGTACTG
AGACAAGTAAAGAAAACGAAGGATTCTTGTTTAAGATAGGTGGTAAAATA
CTTAGTAACCAAACAACCATTAGCATATAGCCTGTTTGTTTGTTGCGTAA
GTCCTGGTGAATAAACGGTGATCGAACAGCTAAGAATCTCTCCATAGATA
ACATCAAAACATGAATTAAAGAGacaaacattgaaaatgttACAAAGTAA
CTGATAATTTCATGAAACCATGGATCATTAGCTTCTGTGATAAACGCCAT
TATCTTGATAGCTGCAGCAAGACCAACAACCAGATTTGAAACGCATAAAC
TTAAAACTATAATCTCATCCGGTTTGTAAACACTTGAATCAATTCTGGAG
TAAACTGAAAATCGATATCGGTCTCTTTTATACCGTCGTTTCTGGTGCGT
TATAATCCGATGTTTCTTGGTTCCAATATATACAATAGCTGAGCAATTCA
GTACAACCACAAAGAAGGACATCATCCAGGCAATaacaataccaaattta
tatCCATCACCATATTGGGAATAAAGCTTATGGCTCGGTGACATTTCGAG
TAGAAGTATGTAGTATTTTTGAATCAACAAGTATATAACTAAGGTCTATT
TTTCTTTGTCTTATTTTGCATTACAAGTCTAGCCAACAAGCTAGTCCCGA
AAGTACTAGGAATACGTTGTTTTGATCAAAAGTATAACCACTCCAAGTTT
CCAATCACTTTTGAATAGAGT Run BLAST on NCBI protein sequence of TCONS_00028443-protein >TCONS_00028443-protein ID=TCONS_00028443-protein|Name=TCONS_00028443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MSPSHKLYSQYGDGYKFGIVIAWMMSFFVVVLNCSAIVYIGTKKHRIITH
QKRRYKRDRYRFSVYSRIDSSVYKPDEIIVLSLCVSNLVVGLAAAIKIMA
FITEANDPWFHEIISYFVTFSMFVSLIHVLMLSMERFLAVRSPFIHQDLR
NKQTGYMLMVVWLLSILPPILNKNPSFSLLVSVLMITSYIILIVTYTFIF
HMMGIAFRTNTNSITDDSDHRRQKERERRSTFSCCSIVISYILCTILPVI
KLLHTKSGINNLHTTMDVLMFVFLLMRSISDPLVYTLRNKIYNIGMYCCN
CTCRKKSTKLFEID Run BLAST on NCBI transcript from alignment at sc0000678:123317..124437 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028443 ID=TCONS_00028443|Name=TCONS_00028443|organism=Clytia hemisphaerica|type=transcript|length=1121bp|location=Sequence derived from alignment at sc0000678:123317..124437 (Clytia hemisphaerica)
ACTCTATTCAAAAGTGATTGGAAACTTGGAGTGGTTATACTTTTGATCAA
AACAACGTATTCCTAGTACTTTCGGGACTAGCTTGTTGGCTAGACTTGTA
ATGCAAAATAAGACAAAGAAAAATAGACCTTAGTTATATACTTGTTGATT
CAAAAATACTACATACTTCTACTCGAAATGTCACCGAGCCATAAGCTTTA
TTCCCAATATGGTGATGGatataaatttggtattgttATTGCCTGGATGA
TGTCCTTCTTTGTGGTTGTACTGAATTGCTCAGCTATTGTATATATTGGA
ACCAAGAAACATCGGATTATAACGCACCAGAAACGACGGTATAAAAGAGA
CCGATATCGATTTTCAGTTTACTCCAGAATTGATTCAAGTGTTTACAAAC
CGGATGAGATTATAGTTTTAAGTTTATGCGTTTCAAATCTGGTTGTTGGT
CTTGCTGCAGCTATCAAGATAATGGCGTTTATCACAGAAGCTAATGATCC
ATGGTTTCATGAAATTATCAGTTACTTTGTaacattttcaatgtttgtCT
CTTTAATTCATGTTTTGATGTTATCTATGGAGAGATTCTTAGCTGTTCGA
TCACCGTTTATTCACCAGGACTTACGCAACAAACAAACAGGCTATATGCT
AATGGTTGTTTGGTTACTAAGTATTTTACCACCTATCTTAAACAAGAATC
CTTCGTTTTCTTTACTTGTCTCAGTACTGATGATCACATCGTACATTATT
CTTATTGTCACATACACTTTTATTTTCCACATGATGGGAATAGCTTTTCG
AACCAATACTAATAGTATTACAGACGATTCTGATCATAGACGCCAGAAAG
AGCGAGAACGGAGAAGCACTTTTAGTTGTTGCAGTATTGTGATATCATAT
ATCTTATGTACCATTCTTCCGGTCATTAAATTATTACACACAAAGTCTGG
AATTAATAACCTTCATACCACCATGGATGTTTTAATGTTTGTTTTCCTCT
TAATGCGTTCTATTTCAGACCCTCTTGTCTACACATTGCGTAATAAAATC
TATAACATTGGCATGTATTGTTGTAACTGTACATGCAGGAAAAAATCCAC
AAAACTGTTTGAGATTGATGA Coding sequence (CDS) from alignment at sc0000678:123317..124437 >TCONS_00028443 ID=TCONS_00028443|Name=TCONS_00028443|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000678:123317..124437 (Clytia hemisphaerica)
ATGTCACCGAGCCATAAGCTTTATTCCCAATATGGTGATGGatataaatt
tggtattgttATTGCCTGGATGATGTCCTTCTTTGTGGTTGTACTGAATT
GCTCAGCTATTGTATATATTGGAACCAAGAAACATCGGATTATAACGCAC
CAGAAACGACGGTATAAAAGAGACCGATATCGATTTTCAGTTTACTCCAG
AATTGATTCAAGTGTTTACAAACCGGATGAGATTATAGTTTTAAGTTTAT
GCGTTTCAAATCTGGTTGTTGGTCTTGCTGCAGCTATCAAGATAATGGCG
TTTATCACAGAAGCTAATGATCCATGGTTTCATGAAATTATCAGTTACTT
TGTaacattttcaatgtttgtCTCTTTAATTCATGTTTTGATGTTATCTA
TGGAGAGATTCTTAGCTGTTCGATCACCGTTTATTCACCAGGACTTACGC
AACAAACAAACAGGCTATATGCTAATGGTTGTTTGGTTACTAAGTATTTT
ACCACCTATCTTAAACAAGAATCCTTCGTTTTCTTTACTTGTCTCAGTAC
TGATGATCACATCGTACATTATTCTTATTGTCACATACACTTTTATTTTC
CACATGATGGGAATAGCTTTTCGAACCAATACTAATAGTATTACAGACGA
TTCTGATCATAGACGCCAGAAAGAGCGAGAACGGAGAAGCACTTTTAGTT
GTTGCAGTATTGTGATATCATATATCTTATGTACCATTCTTCCGGTCATT
AAATTATTACACACAAAGTCTGGAATTAATAACCTTCATACCACCATGGA
TGTTTTAATGTTTGTTTTCCTCTTAATGCGTTCTATTTCAGACCCTCTTG
TCTACACATTGCGTAATAAAATCTATAACATTGGCATGTATTGTTGTAAC
TGTACATGCAGGAAAAAATCCACAAAACTGTTTGAGATTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028443-exon-sc0000678-1491911889:123317..124437 | TCONS_00028443-exon-sc0000678-1491911889:123317..124437 | Clytia hemisphaerica | exon |
| TCONS_00028443-exon-sc0000678-1510915933:123317..124437 | TCONS_00028443-exon-sc0000678-1510915933:123317..124437 | Clytia hemisphaerica | exon |
| TCONS_00028443-exon-sc0000678-1575043694:123317..124437 | TCONS_00028443-exon-sc0000678-1575043694:123317..124437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000678 | supercontig | sc0000678:123317..124437 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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