TCONS_00028484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028484
Unique NameTCONS_00028484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028484 ID=TCONS_00028484|Name=TCONS_00028484|organism=Clytia hemisphaerica|type=transcript|length=1269bp
GGTGCAGAACCCTAAGTTCTATTACTCACTTTCAATGGGTGCAATGTACA
TCTCTATTTTCATATCCGTCATTACGTGCGCGAGATACATGGATAAAACA
CGGAATCTCCGACGAATCGCCTTAACAACCATCGTTTTTTCTATCGTTGG
AAATTTGACGTATACTATTACATTTTCGCCGTATTTACCGATTATTGGAC
GGTTTTTATGCGGTATTAATGATGGAGTACGTATTTGTGCCGCAGGTGAA
TTATCAAGAGTTTACGGTAAACACGAGCTTGGCAAAATCTTCTCCACCAA
TGAGATTGTTGGACTGATTGTAACCTCATTGGCACCTTGTACACCCGTTT
TATTTACCGGTATTAATTTCCACATCGGATACTTGCATATCACGACAAAC
AACTTTATTGGATTATTTCTGGCAGTGGTAGCAGCTATTATATGGGTTGC
AACCTATTTGCTTTTACCTAACTTAACATTAGAACCTATATACAAGACGA
tgaaaaatgatgttttttcaACAGAAGTCGCAGATTCTGTAGggaataat
aacaataataacaataatacaaAGAACGCAACAACTTCGGAGATATTTGA
AGAGACCAACGAATCATCGAATCAACGCAAAAAGACACCTTCAACTTCTA
CTGAAGAACTTGAAACAATTTCAGATTTATGGACCACTAAAGATATCGTT
CAAAGAATTGACgtcttttttatcattttgacgCAAGCATTCTTAAGTGG
TCAATACTATCAGATGGAATTACTAATAAATATGACTGCATTACTTATTT
TTCAGTTTAATATGACTGAAATCAGCATTGCTACTACGATTGGAGTTGTG
TTTGCATCATTAGTAATGTTGGCAATAAGAATTCGTTTACTAGGCTCGTC
TGTTAACATTGTTTTTCTGTTCGCCTTATCATTCGTGTTGGCAACAATAC
TAGAGAGCTATTTAAACATTATCATCTTATCAGGATTTCGCATCAAAATT
ATTCTTCAAGCCACTATATCGATTGTGGTGTTTTTGAATACGCTCCAAGC
TTTCGGTGCAGGAAGCTACACCAAAATTATACTTTTCTCAATGGCTCCAC
AGCACTCGGCAGCCATTATTGAAAGTCATCGTAAAGCGAGTGCAAGCTTT
TTCATCTGTGTGGCATTTTTTACTGCCAGTGCAGTTTTCTCTGTTCAGTA
CTTTGTGACACCTGTATATAATTTGATTTCTTTGGTCGTTGCAGGGGCAT
TATTATACAAAAGACATTG
Run BLAST on NCBI

protein sequence of TCONS_00028484-protein

>TCONS_00028484-protein ID=TCONS_00028484-protein|Name=TCONS_00028484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
VQNPKFYYSLSMGAMYISIFISVITCARYMDKTRNLRRIALTTIVFSIVG
NLTYTITFSPYLPIIGRFLCGINDGVRICAAGELSRVYGKHELGKIFSTN
EIVGLIVTSLAPCTPVLFTGINFHIGYLHITTNNFIGLFLAVVAAIIWVA
TYLLLPNLTLEPIYKTMKNDVFSTEVADSVGNNNNNNNNTKNATTSEIFE
ETNESSNQRKKTPSTSTEELETISDLWTTKDIVQRIDVFFIILTQAFLSG
QYYQMELLINMTALLIFQFNMTEISIATTIGVVFASLVMLAIRIRLLGSS
VNIVFLFALSFVLATILESYLNIIILSGFRIKIILQATISIVVFLNTLQA
FGAGSYTKIILFSMAPQHSAAIIESHRKASASFFICVAFFTASAVFSVQY
FVTPVYNLISLVVAGALLYKRH
Run BLAST on NCBI

transcript from alignment at sc0000682:72713..74885-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028484 ID=TCONS_00028484|Name=TCONS_00028484|organism=Clytia hemisphaerica|type=transcript|length=2173bp|location=Sequence derived from alignment at sc0000682:72713..74885- (Clytia hemisphaerica)
GGTGCAGAACCCTAAGTTCTATTACTCACTTTCAATGGGTGCAATGTACA
TCTCTATTTTCATATCCGTCATTACGTGCGCGAGATACATGGATAAAACA
CGGAATCTCCGACGAATCGCCTTAACAACCATCGTTTTTTCTATCGTTGG
AAATTTGACGTATACTATTACATTTTCGCCGTATTTACCGATTATTGGAC
GGTTTTTATGCGGTATTAATGATGGAGTACGTATTTGTGCCGCAGGTAAT
ATTTAGTTCATGGTTTCTGGGAGCTACTGATAAATCATCGGTCACGTCTA
TTTTAAAGACAATACTTTGTCAGGTTATCTGATATATCGATGGCGGATTG
GCAGCCACCCACGCTAAAGTTCTAAAGGAGTGGGCCAATTTCACAATGGT
AGTTGTATGACAGTCGGCTTTTGATGTGCCTGATCCAGCTCGGGTTTAAC
TACCCTTTCGGGTAAACTTAAAAATATTTCAGTTTGACCCGCCATCCTCC
GAAAATGAAGGCTGGGTTACCAGACCTCCCGCTGCAAAATCCTTAGCGTG
GTTTTGCAAAATTCCGTAATGTAAACCTTCAGGATTCTGAAAACTTTCTC
GAACTTCAGAGCTTTAAAGTTTCCTATCGGAGAAAATTTATGCACTTTGC
AGATATTTCGTCAGAGGATCAATTTTTTCAGAAAGACAAAAACCTATCCG
AGTTTTTTTTTAATTAATCCTTTTTCGGAAATTTCGTCATTTAATTAATC
ATTTTAAGTGCAACGACGTCTTGTTTTGAGACCATTACCAAAGTGATTAA
ATCCGTTGAATCTTCAAGTGTTTTGAATAGAGTTACAGGTGGCAGCTGGC
ACACAACGTTGTTTCAACGTTTATCTAACGTTCACAACGTCCATATAACG
TTAGATGAACGTTGAAACAACGTTGTGTGCCAGCCGGAAAACTTCTTCTG
AGCTCCTTTCGTAATCTATTACTATAGCAATATTTTGAAAACGAGCTAAT
TGGCTAACTAATATATTGGTCCCCTCGGCTCTGTAATCTAATCTCTCTCT
TTGTAATTCGAAGAAAATTTTTTGTCCTATGAAGATCGAATTAGAGAGAG
ACTTTACTTAAAATTTTCAACTTGAATTTCTCCTGTATCATTTTTACAGG
TGAATTATCAAGAGTTTACGGTAAACACGAGCTTGGCAAAATCTTCTCCA
CCAATGAGATTGTTGGACTGATTGTAACCTCATTGGCACCTTGTACACCC
GTTTTATTTACCGGTATTAATTTCCACATCGGATACTTGCATATCACGAC
AAACAACTTTATTGGATTATTTCTGGCAGTGGTAGCAGCTATTATATGGG
TTGCAACCTATTTGCTTTTACCTAACTTAACATTAGAACCTATATACAAG
ACGATGAAAAATGATGTTTTTTCAACAGAAGTCGCAGATTCTGTAGGGAA
TAATAACAATAATAACAATAATACAAAGAACGCAACAACTTCGGAGATAT
TTGAAGAGACCAACGAATCATCGAATCAACGCAAAAAGACACCTTCAACT
TCTACTGAAGAACTTGAAACAATTTCAGATTTATGGACCACTAAAGATAT
CGTTCAAAGAATTGACGTCTTTTTTATCATTTTGACGCAAGCATTCTTAA
GTGGTCAATACTATCAGATGGAATTACTAATAAATATGACTGCATTACTT
ATTTTTCAGTTTAATATGACTGAAATCAGCATTGCTACTACGATTGGAGT
TGTGTTTGCATCATTAGTAATGTTGGCAATAAGAATTCGTTTACTAGGCT
CGTCTGTTAACATTGTTTTTCTGTTCGCCTTATCATTCGTGTTGGCAACA
ATACTAGAGAGCTATTTAAACATTATCATCTTATCAGGATTTCGCATCAA
AATTATTCTTCAAGCCACTATATCGATTGTGGTGTTTTTGAATACGCTCC
AAGCTTTCGGTGCAGGAAGCTACACCAAAATTATACTTTTCTCAATGGCT
CCACAGCACTCGGCAGCCATTATTGAAAGTCATCGTAAAGCGAGTGCAAG
CTTTTTCATCTGTGTGGCATTTTTTACTGCCAGTGCAGTTTTCTCTGTTC
AGTACTTTGTGACACCTGTATATAATTTGATTTCTTTGGTCGTTGCAGGG
GCATTATTATACAAAAGACATTG

Coding sequence (CDS) from alignment at sc0000682:72713..74885-

>TCONS_00028484 ID=TCONS_00028484|Name=TCONS_00028484|organism=Clytia hemisphaerica|type=CDS|length=2532bp|location=Sequence derived from alignment at sc0000682:72713..74885- (Clytia hemisphaerica)
GTGAATTATCAAGAGTTTACGGTAAACACGAGCTTGGCAAAATCTTCTCC
ACCAATGAGATTGTTGGACTGATTGTAACCTCATTGGCACCTTGTACACC
CGTTTTATTTACCGGTATTAATTTCCACATCGGATACTTGCATATCACGA
CAAACAACTTTATTGGATTATTTCTGGCAGTGGTAGCAGCTATTATATGG
GTTGCAACCTATTTGCTTTTACCTAACTTAACATTAGAACCTATATACAA
GACGATGAAAAATGATGTTTTTTCAACAGAAGTCGCAGATTCTGTAGGGA
ATAATAACAATAATAACAATAATACAAAGAACGCAACAACTTCGGAGATA
TTTGAAGAGACCAACGAATCATCGAATCAACGCAAAAAGACACCTTCAAC
TTCTACTGAAGAACTTGAAACAATTTCAGATTTATGGACCACTAAAGATA
TCGTTCAAAGAATTGACGTCTTTTTTATCATTTTGACGCAAGCATTCTTA
AGTGGTCAATACTATCAGATGGAATTACTAATAAATATGACTGCATTACT
TATTTTTCAGTTTAATATGACTGAAATCAGCATTGCTACTACGATTGGAG
TTGTGTTTGCATCATTAGTAATGTTGGCAATAAGAATTCGTTTACTAGGC
TCGTCTGTTAACATTGTTTTTCTGTTCGCCTTATCATTCGTGTTGGCAAC
AATACTAGAGAGCTATTTAAACATTATCATCTTATCAGGATTTCGCATCA
AAATTATTCTTCAAGCCACTATATCGATTGTGGTGTTTTTGAATACGCTC
CAAGCTTTCGGTGCAGGAAGCTACACCAAAATTATACTTTTCTCAATGGC
TCCACAGCACTCGGCAGCCATTATTGAAAGTCATCGTAAAGCGAGTGCAA
GCTTTTTCATCTGTGTGGCATTTTTTACTGCCAGTGCAGTTTTCTCTGTT
CAGTACTTTGTGACACCTGTATATAATTTGATTTCTTTGGTCGTTGCAGG
GGCATTATTATACAAAAGACATGTGCAGAACCCTAAGTTCTATTACTCAC
TTTCAATGGGTGCAATGTACATCTCTATTTTCATATCCGTCATTACGTGC
GCGAGATACATGGATAAAACACGGAATCTCCGACGAATCGCCTTAACAAC
CATCGTTTTTTCTATCGTTGGAAATTTGACGTATACTATTACATTTTCGC
CGTATTTACCGATTATTGGACGGTTTTTATGCGGTATTAATGATGGAGTA
CGTATTTGTGCCGCAGGTGAATTATCAAGAGTTTACGGTAAACACGAGCT
TGGCAAAATCTTCTCCACCAATGAGATTGTTGGACTGATTGTAACCTCAT
TGGCACCTTGTACACCCGTTTTATTTACCGGTATTAATTTCCACATCGGA
TACTTGCATATCACGACAAACAACTTTATTGGATTATTTCTGGCAGTGGT
AGCAGCTATTATATGGGTTGCAACCTATTTGCTTTTACCTAACTTAACAT
TAGAACCTATATACAAGACGATGAAAAATGATGTTTTTTCAACAGAAGTC
GCAGATTCTGTAGGGAATAATAACAATAATAACAATAATACAAAGAACGC
AACAACTTCGGAGATATTTGAAGAGACCAACGAATCATCGAATCAACGCA
AAAAGACACCTTCAACTTCTACTGAAGAACTTGAAACAATTTCAGATTTA
TGGACCACTAAAGATATCGTTCAAAGAATTGACGTCTTTTTTATCATTTT
GACGCAAGCATTCTTAAGTGGTCAATACTATCAGATGGAATTACTAATAA
ATATGACTGCATTACTTATTTTTCAGTTTAATATGACTGAAATCAGCATT
GCTACTACGATTGGAGTTGTGTTTGCATCATTAGTAATGTTGGCAATAAG
AATTCGTTTACTAGGCTCGTCTGTTAACATTGTTTTTCTGTTCGCCTTAT
CATTCGTGTTGGCAACAATACTAGAGAGCTATTTAAACATTATCATCTTA
TCAGGATTTCGCATCAAAATTATTCTTCAAGCCACTATATCGATTGTGGT
GTTTTTGAATACGCTCCAAGCTTTCGGTGCAGGAAGCTACACCAAAATTA
TACTTTTCTCAATGGCTCCACAGCACTCGGCAGCCATTATTGAAAGTCAT
CGTAAAGCGAGTGCAAGCTTTTTCATCTGTGTGGCATTTTTTACTGCCAG
TGCAGTTTTCTCTGTTCAGTACTTTGTGACACCTGTATATAATTTGATTT
CTTTGGTCGTTGCAGGGGCATTATTATACAAAAGACATGTGCAGAACCCT
AAGTTCTATTACTCACTTTCAATGGGTGCAATGTACATCTCTATTTTCAT
ATCCGTCATTACGTGCGCGAGATACATGGATAAAACACGGAATCTCCGAC
GAATCGCCTTAACAACCATCGTTTTTTCTATCGTTGGAAATTTGACGTAT
ACTATTACATTTTCGCCGTATTTACCGATTATTGGACGGTTTTTATGCGG
TATTAATGATGGAGTACGTATTTGTGCCGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016134XLOC_016134Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028484-proteinTCONS_00028484-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028484-exon-sc0000682-1575043694:74641..74885TCONS_00028484-exon-sc0000682-1575043694:74641..74885Clytia hemisphaericaexon
TCONS_00028484-exon-sc0000682-1575043694:72713..73736TCONS_00028484-exon-sc0000682-1575043694:72713..73736Clytia hemisphaericaexon
TCONS_00028484-exon-sc0000682-1510915933:74641..74885TCONS_00028484-exon-sc0000682-1510915933:74641..74885Clytia hemisphaericaexon
TCONS_00028484-exon-sc0000682-1510915933:72713..73736TCONS_00028484-exon-sc0000682-1510915933:72713..73736Clytia hemisphaericaexon
TCONS_00028484-exon-sc0000682-1491911889:74641..74885TCONS_00028484-exon-sc0000682-1491911889:74641..74885Clytia hemisphaericaexon
TCONS_00028484-exon-sc0000682-1491911889:72713..73736TCONS_00028484-exon-sc0000682-1491911889:72713..73736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000682supercontigsc0000682:72713..74885 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0652762	0	0.0370753	0	0.0356667	0.0430304	0.141254	0.141021	0.0349354	0.101727	0.121888	0.392872	0.241923	0.0904632	0.0407908	0.757083	0.958905	1.10578	0.735313	2.27671	1.60172	2.20152	2.94358	1.28949	1.57917	0.118455	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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