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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028544 ID=TCONS_00028544|Name=TCONS_00028544|organism=Clytia hemisphaerica|type=transcript|length=1179bp
GTGTTATAAGCATTTTCAAGCTTCCGAAAACgcactttttttatttgaac
ctTAAAGCTAAGTAAAGTTAAAATATAGTTATAAATGTGTCACACTAAAA
TAGTAGCTTTATTTTCCAATAAAGGTTTCTAATAGGTTATTACGgaaatt
aaacaaaataaaattaatacAAAATGTTTGACTTGATCGATGATTTGAAC
CCAGACAAATGGGAAGACAAAGGTTCGCCACCAGACGATTTAGAATCGAT
TCCGGAATTTAATCAATACGTAAATTGTCATATCGTTACCCGCAAGCCAG
CGCCGTCACCCATCACCGAGATAACGTACGTAGCAGCGGACGAAGCCGGA
AAAAACACAAAACAGGTCATTTTAAAAGACACCAAGGTCAAGGATCCCCT
AAAGAATGTACGACATTTTAGAGCTGTATTGGTCCCAGTTACTGGAGgag
aagaaaatgtttttgaagctACTGCCGTTTTATTAGATATGGACTGGGTT
GTTAAGAAATagatattttcatcaattttgtaATTAGTGTGAAAAAATTA
TGAATGATAAATTTGTTCCAATTTTTATTGCAGGCTCTGTATATTTCGGT
GCTGGTATCTGGCTTTTTTATCTGGctattttttaaagtaaaagcTCTGT
TGGGGAAAGAACCATTCAACGGGGGCTGCTAAGAAAAATAAGAAGGGttt
gaataaatatttgaaatctgATATTTGAAAAGGTTCAATAGTTTTGATCA
TCTTTACTTTTCTTCTTTACGTATGACATTTTggtttttagaatcttcct
gATCAAAATCTTTCCAACGAGGTACTACTTTTTAGCTATTTAGAATCAAC
ATAGATTTCTAGAATTTTTTATTGGATAAGATGTCGAAAACAGAGAATAC
AAACAGAAAAACTTAAATGCCAAAATGAGTCAGTGCAAGGCCAATGAGTG
GACCTAATAAGAGCCATATTAATCGTTATAACCAAGTACTTAACTAAGGA
TTGAGTTAGAAAGACTGAATAacgatttttaaatatttcttattcACATA
TATATTTATCaatagaaaatcaaagaaatatttctgtAGTTTTAAAAACG
AATATTCcattgaaaatgtttatgtAATAAAGATAGCTGTCATAAATATA
ATTCCTGATTATCGGGTGACAAACTTTAN Run BLAST on NCBI protein sequence of TCONS_00028544-protein >TCONS_00028544-protein ID=TCONS_00028544-protein|Name=TCONS_00028544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MFDLIDDLNPDKWEDKGSPPDDLESIPEFNQYVNCHIVTRKPAPSPITEI
TYVAADEAGKNTKQVILKDTKVKDPLKNVRHFRAVLVPVTGGEENVFEAT
AVLLDMDWVVKK Run BLAST on NCBI transcript from alignment at sc0000691:1119..3647+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028544 ID=TCONS_00028544|Name=TCONS_00028544|organism=Clytia hemisphaerica|type=transcript|length=2529bp|location=Sequence derived from alignment at sc0000691:1119..3647+ (Clytia hemisphaerica)
GTGTTATAAGCATTTTCAAGCTTCCGAAAACgcactttttttatttgaac
ctTAAAGCTAAGTAAAGTTAAAATATAGTTATAAATGTGTCACACTAAAA
TAGTAGCTTTATTTTCCAATAAAGGTTTCTAATAGGTTATTACGgaaatt
aaacaaaataaaatcNAATAGCTTTATTTtccaataaaaatttctaatag
GTTATTACGgaaattaaacaaaataaaattaatacAAAATGTTTGACTTG
ATCGATGATTTGAACCCAGACAAATGGGAAGACAAAGGTTCGCCACCAGA
CGATTTAGAATCGATTCGTAAGTATTTTGAGAGATCTTTGTACAAACTTT
GGGGGGATACATGGGCAAAAACGGGTACGGGGAtctgccgctggtcaggg
tatcATTTTTTTACCTCCActagtcccacgtagggtcacaaaaacaccaa
aaaggaaaaaagtagaaaatttggagaaaattttCCAGTCTCTATCCcct
tcagggtcacttttttcagCAAAGTGAGTctcacgtagggtccattttta
gaatttcagcGGCACACCCTGTCAGTCGGCAAAGGTAGCACCCCACCTAG
GGGACCTTTAATTTGGCGcatctttaaaaatattatttatatGGTGTAGC
AAAGAGGCGTGCCTTTTTACTGACAAAACAgaataaataaaagaatttct
caGAATTTGTGCTGCGTGCAGCGCTGCAAGGATAAAAAGTTGTTCTTTAg
cctgaatcgcagacctctccAAAATTGGCCGTTAGTAAAAATAATAGTAT
CAGTATCATTTCATTTTCAccatatttttaaaggaaagacTTTTTTGCCT
TCTCGCCGCACCGACCTTCAATTTTCTCGAAAGCCtgagtttttgaaact
tttgactgTCGTTGATCTTTCCGACTATCaaataaaaatacttttgaCCG
TTTAAGATACTTCTGTCCGTTTAATTCTTTTGTCAGTTCAGCTATATCAG
CCAACTGACAAAAGAATCATTGGAAACGGCTgcaattcaagaaaaaaatg
aagaaaaactcGCACAGACAGTGATTTTGCAGTGTGGAGCTCGGGGTCTC
GAATTTTACTTTCcgtcaaaattttctttgatttctgtCACACTTGACTA
ACAAAGTTCAGGATACCAAAACTTTCTTTGCAGTGCAACAAGTTTTCGTG
AcagttttgtaaattttgatgatttattAGAATGCGATAAACTTTCGCTG
GGATTAAATTAacaaatggaaatttggaagggcctcatctgcgaaatatt
tctaaacaaaactcaaactAAGTCAAATAAATACTGTTTGAATGgctact
tgcatcaaagaagcacaaataatgtttatttcaacaaccaacatgcatga
tttgacagtaaaagtcacaaaatcgtgaaatactgccacccaatagtgcc
acctgCGAAATTTAATCACCGCGAAAGTGTATCCCATATTAAAGTATTTT
GACTGGTATATGACGGACTTTTTATAAAACGTGGCTAGTCCTGATCGTTA
AGTTAATGCGTTATATTTAGCTTTATGATCACAATCTTTTTTACATCCAT
AGCGGAATTTAATCAATACGTAAATTGTCATATCGTTACCCGCAAGCCAG
CGCCGTCACCCATCACCGAGATAACGTACGTAGCAGCGGACGAAGCCGGA
AAAAACACAAAACAGGTCATTTTAAAAGACACCAAGGTCAAGGATCCCCT
AAAGAATGTACGACATTTTAGAGCTGTATTGGTCCCAGTTACTGGAGgag
aagaaaatgtttttgaagctACTGCCGTTTTATTAGATATGGACTGGGTT
GTTAAGAAATagatattttcatcaattttgtaATTAGTGTGAAAAAATTA
TGAATGATAAATTTGTTCCAATTTTTATTGCAGGCTCTGTATATTTCGGT
GCTGGTATCTGGCTTTTTTATCTGGctattttttaaagtaaaagcTCTGT
TGGGGAAAGAACCATTCAACGGGGGCTGCTAAGAAAAATAAGAAGGGttt
gaataaatatttgaaatctgATATTTGAAAAGGTTCAATAGTTTTGATCA
TCTTTACTTTTCTTCTTTACGTATGACATTTTggtttttagaatcttcct
gATCAAAATCTTTCCAACGAGGTACTACTTTTTAGCTATTTAGAATCAAC
ATAGATTTCTAGAATTTTTTATTGGATAAGATGTCGAAAACAGAGAATAC
AAACAGAAAAACTTAAATGCCAAAATGAGTCAGTGCAAGGCCAATGAGTG
GACCTAATAAGAGCCATATTAATCGTTATAACCAAGTACTTAACTAAGGA
TTGAGTTAGAAAGACTGAATAacgatttttaaatatttcttattcACATA
TATATTTATCaatagaaaatcaaagaaatatttctgtAGTTTTAAAAACG
AATATTCcattgaaaatgtttatgtAATAAAGATAGCTGTCATAAATATA
ATTCCTGATTATCGGGTGACAAACTTTAN Coding sequence (CDS) from alignment at sc0000691:1119..3647+ >TCONS_00028544 ID=TCONS_00028544|Name=TCONS_00028544|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000691:1119..3647+ (Clytia hemisphaerica)
ATGTTTGACTTGATCGATGATTTGAACCCAGACAAATGGGAAGACAAAGG
TTCGCCACCAGACGATTTAGAATCGATTCCGGAATTTAATCAATACGTAA
ATTGTCATATCGTTACCCGCAAGCCAGCGCCGTCACCCATCACCGAGATA
ACGTACGTAGCAGCGGACGAAGCCGGAAAAAACACAAAACAGGTCATTTT
AAAAGACACCAAGGTCAAGGATCCCCTAAAGAATGTACGACATTTTAGAG
CTGTATTGGTCCCAGTTACTGGAGgagaagaaaatgtttttgaagctACT
GCCGTTTTATTAGATATGGACTGGGTTGTTAAGAAATagATGTTTGACTT
GATCGATGATTTGAACCCAGACAAATGGGAAGACAAAGGTTCGCCACCAG
ACGATTTAGAATCGATTCCGGAATTTAATCAATACGTAAATTGTCATATC
GTTACCCGCAAGCCAGCGCCGTCACCCATCACCGAGATAACGTACGTAGC
AGCGGACGAAGCCGGAAAAAACACAAAACAGGTCATTTTAAAAGACACCA
AGGTCAAGGATCCCCTAAAGAATGTACGACATTTTAGAGCTGTATTGGTC
CCAGTTACTGGAGgagaagaaaatgtttttgaagctACTGCCGTTTTATT
AGATATGGACTGGGTTGTTAAGAAATag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028544-exon-sc0000691-1491911889:1119..1253 | TCONS_00028544-exon-sc0000691-1491911889:1119..1253 | Clytia hemisphaerica | exon |
| TCONS_00028544-exon-sc0000691-1510915933:1119..1253 | TCONS_00028544-exon-sc0000691-1510915933:1119..1253 | Clytia hemisphaerica | exon |
| TCONS_00028544-exon-sc0000691-1575043694:1119..1253 | TCONS_00028544-exon-sc0000691-1575043694:1119..1253 | Clytia hemisphaerica | exon |
| TCONS_00028544-exon-sc0000691-1491911889:1319..1435 | TCONS_00028544-exon-sc0000691-1491911889:1319..1435 | Clytia hemisphaerica | exon |
| TCONS_00028544-exon-sc0000691-1510915933:1319..1435 | TCONS_00028544-exon-sc0000691-1510915933:1319..1435 | Clytia hemisphaerica | exon |
| TCONS_00028544-exon-sc0000691-1575043694:1319..1435 | TCONS_00028544-exon-sc0000691-1575043694:1319..1435 | Clytia hemisphaerica | exon |
| TCONS_00028544-exon-sc0000691-1491911889:2721..3647 | TCONS_00028544-exon-sc0000691-1491911889:2721..3647 | Clytia hemisphaerica | exon |
| TCONS_00028544-exon-sc0000691-1510915933:2721..3647 | TCONS_00028544-exon-sc0000691-1510915933:2721..3647 | Clytia hemisphaerica | exon |
| TCONS_00028544-exon-sc0000691-1575043694:2721..3647 | TCONS_00028544-exon-sc0000691-1575043694:2721..3647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:1119..3647 + |
Blast
The following BLAST results are available for this feature:
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