TCONS_00028551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028551
Unique NameTCONS_00028551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028551 ID=TCONS_00028551|Name=TCONS_00028551|organism=Clytia hemisphaerica|type=transcript|length=1558bp
GTTATGGGTAAACCAAAAGTTCTTCCTTCGAAGGATATAATAAAAGATTC
CAAATCAAAAACAAGTAGAGAaattaaaacaagcaaaaaacaAGAACGTA
AAAAACCGATAGCCAAAAACACTCGCAAGATCAACCCTGTTCCAACAACA
ATGAAGGTCGAGGATCTTTTGTCTTGTAAAGTTGCTGGTTTGGAAACATT
GGATGACCTAGCACGCAAATACAGAGGCAAATTGAATTTACAATTGAAAT
GTACATCAAAAGAACATACTACATTGAATGTAACCCTCAATCATAAAATG
ATAGTTTGGGAATTAGAATTAAATCGTGTTTGTAGTGCAGACCCTGTCAT
AGCTGTTGAGAACTTTGTCGACGATGAAAGTCCTCCTGATTATTTCACCT
ACGTTCGTGAGAATATTGTTTCTACAAAGTGTGGGCGAGAACTTCTAGAT
CCCAGCTTCCTGGTTGGTTGTGAATGTTTTCCAAGATGTTCACCTGCCAA
TTGTCCGTGCCCAAGTAATAGTATGAGTAAATTTGCTTATGACCGATCAA
AAAGGGTACTACTTCCACCAAGATCGCCAATATACGAATGCAACAAGAGC
TGCAAATGTTCTATGGACTGCCCAAATCGCGTTATACAAAAAGGACTAAC
AACTAGGGTTTGTATTTTTCGAACGGACAACGGACGTGGTTGGGGGTTGA
AAACTCGGGAATTTATCCCCAAAAACAAGTTCGTGGTTGAATACGTTGGT
GAAATAATCACAAGTGAAGAAGCTGAACGACGTGGAAAGTTATATGACTC
AAAGCAACAAACaTATTTGTTTGATCTTGATTTTCACGATGAAGATGCAA
CTTTCACCGTTGACGCGTACCGATACGGAAATGTTTCTCATTTCATTAAT
CATTCTtgTGATCCAAACTTGCAAGTTTACAGTGTTTGGGTCGATACACT
TGATCCACGTCTTCCGAGAATCGGTTTATTCGCGACTCGCGACATCAACG
CAGGTGAGGAACTTTCATTTGATTACATGATGACAGGTAGTAATGAAGGC
CAGAAATCAGCTTCTCCGGGTATGcgcaaaaagaagaaaagcaaAGACAA
GTCGGAACTGCCAAATATAGATCGTCATTTTTGTGCATGTGGTGCAAGTA
ACTGTCGAAAATATTtattctagtttttttttttatttcgtcaGGATTTT
TACCCGctattttatatatattttactgTTATTCatagtttttcaatttt
taggtagctacaattttgttttcaatttttcatagattTATTGGATTAAG
GAGCTTAGAACATATACTTTTTGCAGCCTTTTTTCATTGCGTGCAGCTGA
ATTCCTCAACAGTCTTCAGTACTCGAAATGCGTAAAAACATTGCAAACTC
GCTTTTTAAATATTGTTTGAAAGATACTTCAACATCGAATTACAAAAGTT
TCAGGAGCGTGATGGATTTTTAAatgttattttatttaattgtttcatTA
AACACCACACACGCAATAATTCTGAATTTTTCGTTTGTAAGAATATTGCT
TACAGGGT
Run BLAST on NCBI

protein sequence of TCONS_00028551-protein

>TCONS_00028551-protein ID=TCONS_00028551-protein|Name=TCONS_00028551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
VMGKPKVLPSKDIIKDSKSKTSREIKTSKKQERKKPIAKNTRKINPVPTT
MKVEDLLSCKVAGLETLDDLARKYRGKLNLQLKCTSKEHTTLNVTLNHKM
IVWELELNRVCSADPVIAVENFVDDESPPDYFTYVRENIVSTKCGRELLD
PSFLVGCECFPRCSPANCPCPSNSMSKFAYDRSKRVLLPPRSPIYECNKS
CKCSMDCPNRVIQKGLTTRVCIFRTDNGRGWGLKTREFIPKNKFVVEYVG
EIITSEEAERRGKLYDSKQQTYLFDLDFHDEDATFTVDAYRYGNVSHFIN
HSCDPNLQVYSVWVDTLDPRLPRIGLFATRDINAGEELSFDYMMTGSNEG
QKSASPGMRKKKKSKDKSELPNIDRHFCACGASNCRKYLF
Run BLAST on NCBI

transcript from alignment at sc0000691:4617..12187-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028551 ID=TCONS_00028551|Name=TCONS_00028551|organism=Clytia hemisphaerica|type=transcript|length=7571bp|location=Sequence derived from alignment at sc0000691:4617..12187- (Clytia hemisphaerica)
GTTATGGGTAAACCAAAAGTTCTTCCTTCGAAGGATATAATAAAAGATTC
CAAATCAAAAACAAGTAGAGAAATTAAAACAAGCAAAAAACAAGAACGTA
AAAAACCGATAGCCAAAAACACTCGCAAGATCAACCCTGTTCCAACAACA
ATGAAGGTCGAGGATCTTTTGTCTTGTAAAGTTGCTGGTTTGGAAACATT
GGATGACCTAGCACGCAAATACAGAGGCAAATTGAATTTACAATTGAAAT
GTACATCAAAAGAACATACTACATTGAATGTAACCCTCAATCATAAAATG
ATAGTTTGGGAATTAGAATTAAATCGTGTTTGTAGTGCAGACCCTGTCAT
AGCTGTTGAGAACTTTGTCGACGATGAAAGTCCTCCTGATTATTTCACCT
ACGTTCGTGAGAATATTGTTTCTACAAAGTGTGGGCGAGAACTTCTAGAT
CCCAGCTTCCTGGTTGGTTGTGAATGTTTTCCAAGATGTTCACCTGCCAA
TTGTCCGTGCCCAAGTAATAGTATGAGTAAATTTGCTTATGACCGATCAA
AAAGGTAAGATGATAGAGAATGGATCCTTTAAATTTGATGTGATTTAATT
GGTTTTGTTTTTGTGAGCGGAGCTGAAAAAGCGGACTTGTTTGTGCATTT
ACCAAGTTTGAACAGCTCGGTCTTTTGTTTTTAATATAATCTTATTTTGT
TGGGTAATCGACGATCAAAAATTATCTTTTCTTGTTTTGTGTTATCAGCA
ATTAAACTGTTTTTAATTGAAATAACTGGTTGTATTATAAAATATATAGA
TTTACAATTAGATCTAATTCCATTAGAGCCCTTTATAGTCGCACTGTTTT
TCCTAAGTCATAAATTTTGTCTCTTTTTTTCTCAATGATAGCTATGCAGT
TTTTGAATGACATTTTTGGTTTCTCATCTTGCTCACCACTTCATATTTAA
ATAATGTGATGATAAAAGTGATGATAAAACATTCGAAAATCAACAAGATA
TGTACAATTGTTTTTAAAAACCAGGGTACTACTTCCACCAAGATCGCCAA
TATACGAATGCAACAAGAGCTGCAAATGTTCTATGGACTGCCCAAATCGC
GTTATACAAAAAGGACTAACAACTAGGGTAAGATAAACTAAAAGTAATAA
AAGGTAAGTTTATGATCTTATAATAACGTTTACAATGTCCTATATAAGAT
TTATAAGTTATGAAATGTTACTAACTTTCAAGATCTTTATCCATTATCGC
TTTAAACTACAGTCGAGTTTCAATAACTCAACCTCCTCAACTTGATTATC
TCCATAAACTCAACGATTTTTCCGATGTCTTGAGGAGATTCTTAGGCTAT
TCTTCCTCTCTATAACTCAAAATCCCGTAACTCGAACGATTACTGATCAT
CCTCTTAGCTTAAATAGAAAAACTTAATACGCAGGGGGGGGGGTTGGAAT
ATGAATGTCCTGGGTAAAAAAATTTTTGAAAAATTAATTAGCGAGGTGGG
GAGACAGCTATTAGGTACTCGAGAGTAGGTCCAATCAGCGCTCATTTTTC
GGGAAAACATATAAGACTGCATTGTGACAATTCCGTCAGGTGTACCATCT
CGTTTGATTCTCATTAAAAATTGATTTTTATAGGTTTGTATTTTTCGAAC
GGACAACGGACGTGGTTGGGGGTTGAAAACTCGGGAATTTATCCCCAAAA
ACAAGTTCGTGGTTGAATACGTTGGTGAAATAATCACAAGTGAAGAAGCT
GAACGACGTGGAAAGTTATATGACTCAAAGCAACAAACGTAAGTAATTTA
GAATGCTGTCTTGTCTGGATAATTTTCTTTTTAGACCTGCCTCGGAGGTC
CTTTATATTAACCTATGTTTATCCGTCCGTTCGTCTGTTACTAACTTTTC
TCGAGATTGGCTCAATATTTCTCTCTGAATTTTTGCATAGTGATCCAAAA
TGACATTACCCAAAAAGTGACGGAGCCAAATTTTCGCCGTAAAAATCGTA
TTTTTTTATTTTGGAAAATTGTTTTTTTTTCTGATTTTTTGCACAATGAC
ATAAAATGATACTGTAATGTTTAAAATCTGATGGAGCCCGATTTTCGAAC
AAATAATTTTTTGGACAAATTTGGGCCAAAAAGTCCCCAAAATGGGGCTT
TTTTTGACTTTTTTATACCTTAAGGGTATAAATTTTCGCGGGGATTATAT
TTCGCGAATTTTTGTGAATTTTGTTTTTTTTCGCGAAATATAATCGCTTG
CGAAAATTTTCAAACTTTCATCTCTCGCTAAATTCGCGAAATCTAATCCT
CGCGAAAATTAAATTTTTTACACTAAAAATTCTTTCAGCTAAGAAACTCT
CTTAAACGAGTCTCTATTACTCGAATGTCTCTGTAATTCGAATGAATTTT
CATTCCTCGTAGCCGTTCGAGTTATGGAGATTCTACTTTACACATAAAAT
CTCGTAATTGTTAACGTAAACGTTAATCGAACCATGAACATATAAACGAC
TGGACATCTATCTTTTATTGTCTCTTTGAAGGGAGCTTCGTTGCCGCCTG
TATTTCAAAATTTGTATGAAAAATCCGACAATATTCCGTTATAATTCTAT
TTCTTTGAATTATTTAGGTAAAAGGATTGACAGAGCTTGAATATTACTCG
TAACGCACAAAAAAATTATTCTTGAATTTTTTCACAAGTTTGCAATAAAT
TTATCAACGTTTTCAACTCTGAAATGCCGAGTTTCAACTGCGTGTATACT
TTTGAATCACTTTTGTCACTCCAATAATTTTTTTGTTGAGAGCCTATGTT
ATAAGCATATCAAAATTAGAATGCGACACTCTCTATAATTATTCCACACT
TTTAAGTCAAAATTTAGAAATATTAGCCGGATTTTTGACAAGCTGACGAT
GATTTTGCCTCTGTTATCTTTGTTGTGATATAGATGAATTGTTTCATTTT
ATGCTTTTAACGAGGCGGCAACGAAGCTAGCAGCCCTTTCTACAAAAAAA
CAAATGAGATAGATGTCCAGTCGTTTATATGTTCATGATCAAACCAACAA
AAAATGTTAAATCTGAAAAAATTCGCCAATTCGCGAAATTAAATCCCCGT
GAAAATTTACAGTCGAAGTTAGTCGCGATATAAGTCCGCGAAAATTAAAT
TGTTTCGCGAGGGAAGCTGTCTCGCGAAAATTAATTCCCTTAAAGTATAA
AGACAGAGGGAAAGGTTCTCTTAAAAGTGGATGAAACCGTTCTTCCAGGA
AAAATTCTTTAGGTCCTAAAAATCAGATTTTCTCATTTGGGAAATTCCTT
TTTGTGTGTTTTAGGGGAGGTGCATTTCTTGCGATTGGCTTGGTATTTTT
TAGACTTTTGGACCTACCTCTGGGGTCCTTTGATTTAACCATTACTCGTT
CGTTCATCCGTTCGTTCGTCTGTTACCAGCTTTTCTCGGGATTGGCACAT
TATAATTTTTTTTGACTTTTTGCATAGTAATGCAAAATGACAGTACCCAA
AAAGTGACGGAGCCTGATTTTCGAGGAAAATAAATTGGGCAAATTTGGGC
CAAAAACCTTTTTTTTTTGCATAAAGATAAAGGAAAGGTACTTTAAACAT
TGGCTGAAGCTGTTTTTTTTTGGAAAATCTTTTTTCACCGTAAAAATCGG
ATTTTCTTTTTGAGGAAATTCCCTTTTGTCGTTTTTAAGGGAAATGAGCA
TTTCTCTTGATTCACTTAAATTTTTCTTCTGATTTTTCGCACACTGATGT
AAAATGGTATTGTTAAAAATCTGATAGAGCACAATTTTCAAAAAATAAAT
ATTCGGGAAATTTGGGCCAAAAAGTGCCTAAAAATGGAGCGTTTTTTACG
TTTTTTGCTTAGAAAGGCCTTAAAAACGCCTTAATAGAGCTTTTTAAGCG
TTTTTAAGCTATTTTAATGCACATTCGTCGGTTCTGCCCCCTTCACTGGA
CTTCAATGGGTCTAATCCATTGCAATAGAGTGTCCCACGAGGTTTAGGAC
CATTGGGAACCAACTCAGCCCTGTATGAAGCTCGGAATAAGTTTAACTAA
GGCTTTTTTGTGAAATTTCTTCTTTAGTTTTTCGTGATTTATGACACAGT
GATGCAAAATTGTAATCCTTAAAATGTAAGACTTTTTAAAAGAAAAAGTT
TTAGCCAAATTTGAGCCAAATTTTTGATTTGTGGAAGTTGCTTCATTAGA
TTTTATCATAAGGAGCTAGAGTTATCTTTACATGTAAGAAAGAATTGTTT
TTGTTTGTGCCCGCCCAAAACTTAGCTTCTAAAAAATCAGAAAGCCAGCG
TGAAACAAGCTTCATCGTGTTTTTCAAGCTTAAGTATCTCTATGCTATGC
TTATCTTTTCTTTTTCATTCGAACATTTTCATCTTCATTCAGCATGTTTT
TCTCAGGTAGGTAGAGAGACTAAATTTCAGTCAAATCGAAGTCAGTTAGT
CAATGCATGATTTTGGTCAAGTTTGCATTCTGGTCTGTAAAATACCAGCC
AGACAGGTCCGAACCAAAGTCTTGCAAATCATCTTCGATTATATTATGTT
AAAATTTCAAGGTCATAGCACTTGTCAATCTTGAGATTTTAGCCCTCCCC
ACAAGATGCTTCCCTCAGTGCCAAAAATAGTAAGATGCTCAAAGGGAAAT
GATCAAGCGATTGATGACATAGAAGTATACATTTCCTTAATAAATCCTTA
CAAAGACTTAAGGTACCTCCTAAACTCTGACCTACTTCGAAGAATGGAAA
AGGAGTTCTGGGGACCAACCAACCATCCCTGAAACTAGGATGGTTGAGGA
TTAAAATTCACTTTGAGGCTCATAAATTTTTGCTGTGCTGCCCAAATGTA
GCTAACAGCATTCTTTACCTTGAAAGCTGGTACAGGGTACCTTGAAGGAA
GGTATTTCGGTGGCAATTAAATTTGGGGATGAGTCTAAAAAGGTTTTTTA
GAGGGAATTAATAGCACAAATTCGGAAAGACTTTGAATTATATTCGATTT
AGCAGAAATTTATTTTGGGGTGTTATGGTTTTAGGTAAATCTTTCCATCA
ATTTTTTTCCTCTAAGGTAAATATTTTTTAATACTCTGAATTTGTTATAT
TGGCAGCATAAAGGGTGAAAAATTTGAATTCAGCTATCGGCCTATACCCT
GAAAAATTGACCATGTGATATAGATACTTTCACAGAAATCTTTTTGCGCA
ACCATGTTCCAAATGAGAAAGCGAGCCACTGCTCAAAATTTCAAGTCATT
TTGAGCATTGATTCAGATTTTATGGTCATGCATTGATTTAAAGATTTTAG
TGGATAGAGCAGTTACTGCTGCTTAAACAGCTGCTGCTGTGGGTGACATT
GAAGAAATTTTTTATTTCTTCAAATTTATCTTTTACAGTGAATTTGTACA
TAAGTTGAACGGTTTCAAAAGTATAGTTATACAAGTTATATGAAGAATTC
CAGCTAAAGCAGACTTAAAAATAGTTTTTTTTTTTCATTCTTAGATATTT
GTTTGATCTTGATTTTCACGATGAAGATGCAACTTTCACCGTTGACGCGT
ACCGATACGGAAATGTTTCTCATTTCATTAATCATTCTGTAAGTCTCTTT
TGCTTTGAAATATATTGTTTTTGAACGTGTGTACTTCTGAAAAGGATACC
CAGACATTTTTCGTATTCAGGTAATGCTAAAGAGTATCTAAAACCTTATT
AAGTCGATTTTGTGCTTTGATTCGAATATCAATAGAAAGTAGTTAATTCA
ACCCCTATGATTGAAAGATACTGAAAAGGATCAATGCCTTAACCTTAGAG
AGACTACTTTCTACCGATTTTTGTCAGAAAATAAGATGAAGGAGCCATGG
CATAAAGTCAACTGTCTTAACTAGAGCTAGTTATTGAGCTAGTCGTTTAA
TTGAAAAAGTCACCGTCAAGTCACCAGTACGTTCAAGCCAATGGGCTATG
CCAGAAAAGATTTGTACCTACCGGACGTGCGGCCCTTAAGGGTTGGTTTT
TTAGACTTTGGAAAGTGCACTGTAAGGGTTGATTTGTGAGCAAGTGGGAA
AAAGTGCACTGTAAGGGTGTAAAATTTGAGAAAATACCAAATTTTGCGGT
AAAATTTGAGAAATTTCAAAAAACTTTGCCCTGAAAAAATTTCGAAAATT
TTTTTCCTGCATTGTAAGGGTCCGATTTTTGAGACCTAATTTTTGGCCGA
ACGTATGGTCGTTTTCAAAATCGAGTGCCCCCCCCCCGCGGGACGTCACA
CCTCCTAAACATAAGTGGTACAAACTATTTTTGGAATAGCCCAATAAAGC
TTTAGAACTTTGGGTCGCAAACTATATAATCCCCCAGGATGTATGGTCTC
TTATTCTCTATTTTTTATCTGCTATTCTGAGTTTATGACTTTCTCAAGTG
ATTCCAAATGTCTTCCATTTATTTTTCTTAAATTTGCCCATACTGTGAAA
AAAGATCTCTCGCGCCAGCTTGAACCACCCAATACAAACAACCTTGGTTT
ACAAACCCAACGTCTAACCGCTTGTGCAAACGAGGCACGATAGAACTGGA
TTCGGCCATTCTCAAATACTTATATCTTGAAATTTACAGACCTTAATTAA
GATAGCTCCCAACCCTACCGGTGCCCCTAAAAGGTTCCCAATGGATCCTA
AGTTAAGACACATGGTACAACGCAAGGCTTTCGGCCTTCTATTTTGGCTC
TTGAGCTCCAACCCTAAGCCTAACTGATAATAACCGAAACCCCGTCTAGG
TCCGCTGGTTGAAAAATTCCGAGTTTTATCCTAGAGGATGATATCGTCTG
CCAAGGGTCGGCAATTGTCTTGAAAAATATTGAACTTAATTTAGTTTTGC
AGTTGACACGAAAATCTTTTATAGCCGGCCCAAGGTGGTAATACTAAAAT
TTTCTTCAAAATAATTTAGTGTGATCCAAACTTGCAAGTTTACAGTGTTT
GGGTCGATACACTTGATCCACGTCTTCCGAGAATCGGTTTATTCGCGACT
CGCGACATCAACGCAGGTGAGGAACTTTCATTTGATTACATGATGACAGG
TAGTAATGAAGGCCAGAAATCAGCTTCTCCGGGTATGCGCAAAAAGAAGA
AAAGCAAAGACAAGTCGGAACTGCCAAATATAGATCGTCATTTTTGTGCA
TGTGGTGCAAGTAACTGTCGAAAATATTTATTCTAGTTTTTTTTTTTATT
TCGTCAGGATTTTTACCCGCTATTTTATATATATTTTACTGTTATTCATA
GTTTTTCAATTTTTAGGTAGCTACAATTTTGTTTTCAATTTTTCATAGAT
TTATTGGATTAAGGAGCTTAGAACATATACTTTTTGCAGCCTTTTTTCAT
TGCGTGCAGCTGAATTCCTCAACAGTCTTCAGTACTCGAAATGCGTAAAA
ACATTGCAAACTCGCTTTTTAAATATTGTTTGAAAGATACTTCAACATCG
AATTACAAAAGTTTCAGGAGCGTGATGGATTTTTAAATGTTATTTTATTT
AATTGTTTCATTAAACACCACACACGCAATAATTCTGAATTTTTCGTTTG
TAAGAATATTGCTTACAGGGT

Coding sequence (CDS) from alignment at sc0000691:4617..12187-

>TCONS_00028551 ID=TCONS_00028551|Name=TCONS_00028551|organism=Clytia hemisphaerica|type=CDS|length=5865bp|location=Sequence derived from alignment at sc0000691:4617..12187- (Clytia hemisphaerica)
TGTGATCCAAACTTGCAAGTTTACAGTGTTTGGGTCGATACACTTGATCC
ACGTCTTCCGAGAATCGGTTTATTCGCGACTCGCGACATCAACGCAGGTG
AGGAACTTTCATTTGATTACATGATGACAGGTAGTAATGAAGGCCAGAAA
TCAGCTTCTCCGGGTATGCGCAAAAAGAAGAAAAGCAAAGACAAGTCGGA
ACTGCCAAATATAGATCGTCATTTTTGTGCATGTGGTGCAAGTAACTGTC
GAAAATATTTATTCTAGATATTTGTTTGATCTTGATTTTCACGATGAAGA
TGCAACTTTCACCGTTGACGCGTACCGATACGGAAATGTTTCTCATTTCA
TTAATCATTCTGTTTGTATTTTTCGAACGGACAACGGACGTGGTTGGGGG
TTGAAAACTCGGGAATTTATCCCCAAAAACAAGTTCGTGGTTGAATACGT
TGGTGAAATAATCACAAGTGAAGAAGCTGAACGACGTGGAAAGTTATATG
ACTCAAAGCAACAAACGGTACTACTTCCACCAAGATCGCCAATATACGAA
TGCAACAAGAGCTGCAAATGTTCTATGGACTGCCCAAATCGCGTTATACA
AAAAGGACTAACAACTAGGGTTATGGGTAAACCAAAAGTTCTTCCTTCGA
AGGATATAATAAAAGATTCCAAATCAAAAACAAGTAGAGAAATTAAAACA
AGCAAAAAACAAGAACGTAAAAAACCGATAGCCAAAAACACTCGCAAGAT
CAACCCTGTTCCAACAACAATGAAGGTCGAGGATCTTTTGTCTTGTAAAG
TTGCTGGTTTGGAAACATTGGATGACCTAGCACGCAAATACAGAGGCAAA
TTGAATTTACAATTGAAATGTACATCAAAAGAACATACTACATTGAATGT
AACCCTCAATCATAAAATGATAGTTTGGGAATTAGAATTAAATCGTGTTT
GTAGTGCAGACCCTGTCATAGCTGTTGAGAACTTTGTCGACGATGAAAGT
CCTCCTGATTATTTCACCTACGTTCGTGAGAATATTGTTTCTACAAAGTG
TGGGCGAGAACTTCTAGATCCCAGCTTCCTGGTTGGTTGTGAATGTTTTC
CAAGATGTTCACCTGCCAATTGTCCGTGCCCAAGTAATAGTATGAGTAAA
TTTGCTTATGACCGATCAAAAAGTGTGATCCAAACTTGCAAGTTTACAGT
GTTTGGGTCGATACACTTGATCCACGTCTTCCGAGAATCGGTTTATTCGC
GACTCGCGACATCAACGCAGGTGAGGAACTTTCATTTGATTACATGATGA
CAGGTAGTAATGAAGGCCAGAAATCAGCTTCTCCGGGTATGCGCAAAAAG
AAGAAAAGCAAAGACAAGTCGGAACTGCCAAATATAGATCGTCATTTTTG
TGCATGTGGTGCAAGTAACTGTCGAAAATATTTATTCTAGATATTTGTTT
GATCTTGATTTTCACGATGAAGATGCAACTTTCACCGTTGACGCGTACCG
ATACGGAAATGTTTCTCATTTCATTAATCATTCTGTTTGTATTTTTCGAA
CGGACAACGGACGTGGTTGGGGGTTGAAAACTCGGGAATTTATCCCCAAA
AACAAGTTCGTGGTTGAATACGTTGGTGAAATAATCACAAGTGAAGAAGC
TGAACGACGTGGAAAGTTATATGACTCAAAGCAACAAACGGTACTACTTC
CACCAAGATCGCCAATATACGAATGCAACAAGAGCTGCAAATGTTCTATG
GACTGCCCAAATCGCGTTATACAAAAAGGACTAACAACTAGGGTTATGGG
TAAACCAAAAGTTCTTCCTTCGAAGGATATAATAAAAGATTCCAAATCAA
AAACAAGTAGAGAAATTAAAACAAGCAAAAAACAAGAACGTAAAAAACCG
ATAGCCAAAAACACTCGCAAGATCAACCCTGTTCCAACAACAATGAAGGT
CGAGGATCTTTTGTCTTGTAAAGTTGCTGGTTTGGAAACATTGGATGACC
TAGCACGCAAATACAGAGGCAAATTGAATTTACAATTGAAATGTACATCA
AAAGAACATACTACATTGAATGTAACCCTCAATCATAAAATGATAGTTTG
GGAATTAGAATTAAATCGTGTTTGTAGTGCAGACCCTGTCATAGCTGTTG
AGAACTTTGTCGACGATGAAAGTCCTCCTGATTATTTCACCTACGTTCGT
GAGAATATTGTTTCTACAAAGTGTGGGCGAGAACTTCTAGATCCCAGCTT
CCTGGTTGGTTGTGAATGTTTTCCAAGATGTTCACCTGCCAATTGTCCGT
GCCCAAGTAATAGTATGAGTAAATTTGCTTATGACCGATCAAAAAGTGTG
ATCCAAACTTGCAAGTTTACAGTGTTTGGGTCGATACACTTGATCCACGT
CTTCCGAGAATCGGTTTATTCGCGACTCGCGACATCAACGCAGGTGAGGA
ACTTTCATTTGATTACATGATGACAGGTAGTAATGAAGGCCAGAAATCAG
CTTCTCCGGGTATGCGCAAAAAGAAGAAAAGCAAAGACAAGTCGGAACTG
CCAAATATAGATCGTCATTTTTGTGCATGTGGTGCAAGTAACTGTCGAAA
ATATTTATTCTAGATATTTGTTTGATCTTGATTTTCACGATGAAGATGCA
ACTTTCACCGTTGACGCGTACCGATACGGAAATGTTTCTCATTTCATTAA
TCATTCTGTTTGTATTTTTCGAACGGACAACGGACGTGGTTGGGGGTTGA
AAACTCGGGAATTTATCCCCAAAAACAAGTTCGTGGTTGAATACGTTGGT
GAAATAATCACAAGTGAAGAAGCTGAACGACGTGGAAAGTTATATGACTC
AAAGCAACAAACGGTACTACTTCCACCAAGATCGCCAATATACGAATGCA
ACAAGAGCTGCAAATGTTCTATGGACTGCCCAAATCGCGTTATACAAAAA
GGACTAACAACTAGGGTTATGGGTAAACCAAAAGTTCTTCCTTCGAAGGA
TATAATAAAAGATTCCAAATCAAAAACAAGTAGAGAAATTAAAACAAGCA
AAAAACAAGAACGTAAAAAACCGATAGCCAAAAACACTCGCAAGATCAAC
CCTGTTCCAACAACAATGAAGGTCGAGGATCTTTTGTCTTGTAAAGTTGC
TGGTTTGGAAACATTGGATGACCTAGCACGCAAATACAGAGGCAAATTGA
ATTTACAATTGAAATGTACATCAAAAGAACATACTACATTGAATGTAACC
CTCAATCATAAAATGATAGTTTGGGAATTAGAATTAAATCGTGTTTGTAG
TGCAGACCCTGTCATAGCTGTTGAGAACTTTGTCGACGATGAAAGTCCTC
CTGATTATTTCACCTACGTTCGTGAGAATATTGTTTCTACAAAGTGTGGG
CGAGAACTTCTAGATCCCAGCTTCCTGGTTGGTTGTGAATGTTTTCCAAG
ATGTTCACCTGCCAATTGTCCGTGCCCAAGTAATAGTATGAGTAAATTTG
CTTATGACCGATCAAAAAGTGTGATCCAAACTTGCAAGTTTACAGTGTTT
GGGTCGATACACTTGATCCACGTCTTCCGAGAATCGGTTTATTCGCGACT
CGCGACATCAACGCAGGTGAGGAACTTTCATTTGATTACATGATGACAGG
TAGTAATGAAGGCCAGAAATCAGCTTCTCCGGGTATGCGCAAAAAGAAGA
AAAGCAAAGACAAGTCGGAACTGCCAAATATAGATCGTCATTTTTGTGCA
TGTGGTGCAAGTAACTGTCGAAAATATTTATTCTAGATATTTGTTTGATC
TTGATTTTCACGATGAAGATGCAACTTTCACCGTTGACGCGTACCGATAC
GGAAATGTTTCTCATTTCATTAATCATTCTGTTTGTATTTTTCGAACGGA
CAACGGACGTGGTTGGGGGTTGAAAACTCGGGAATTTATCCCCAAAAACA
AGTTCGTGGTTGAATACGTTGGTGAAATAATCACAAGTGAAGAAGCTGAA
CGACGTGGAAAGTTATATGACTCAAAGCAACAAACGGTACTACTTCCACC
AAGATCGCCAATATACGAATGCAACAAGAGCTGCAAATGTTCTATGGACT
GCCCAAATCGCGTTATACAAAAAGGACTAACAACTAGGGTTATGGGTAAA
CCAAAAGTTCTTCCTTCGAAGGATATAATAAAAGATTCCAAATCAAAAAC
AAGTAGAGAAATTAAAACAAGCAAAAAACAAGAACGTAAAAAACCGATAG
CCAAAAACACTCGCAAGATCAACCCTGTTCCAACAACAATGAAGGTCGAG
GATCTTTTGTCTTGTAAAGTTGCTGGTTTGGAAACATTGGATGACCTAGC
ACGCAAATACAGAGGCAAATTGAATTTACAATTGAAATGTACATCAAAAG
AACATACTACATTGAATGTAACCCTCAATCATAAAATGATAGTTTGGGAA
TTAGAATTAAATCGTGTTTGTAGTGCAGACCCTGTCATAGCTGTTGAGAA
CTTTGTCGACGATGAAAGTCCTCCTGATTATTTCACCTACGTTCGTGAGA
ATATTGTTTCTACAAAGTGTGGGCGAGAACTTCTAGATCCCAGCTTCCTG
GTTGGTTGTGAATGTTTTCCAAGATGTTCACCTGCCAATTGTCCGTGCCC
AAGTAATAGTATGAGTAAATTTGCTTATGACCGATCAAAAAGTGTGATCC
AAACTTGCAAGTTTACAGTGTTTGGGTCGATACACTTGATCCACGTCTTC
CGAGAATCGGTTTATTCGCGACTCGCGACATCAACGCAGGTGAGGAACTT
TCATTTGATTACATGATGACAGGTAGTAATGAAGGCCAGAAATCAGCTTC
TCCGGGTATGCGCAAAAAGAAGAAAAGCAAAGACAAGTCGGAACTGCCAA
ATATAGATCGTCATTTTTGTGCATGTGGTGCAAGTAACTGTCGAAAATAT
TTATTCTAGATATTTGTTTGATCTTGATTTTCACGATGAAGATGCAACTT
TCACCGTTGACGCGTACCGATACGGAAATGTTTCTCATTTCATTAATCAT
TCTGTTTGTATTTTTCGAACGGACAACGGACGTGGTTGGGGGTTGAAAAC
TCGGGAATTTATCCCCAAAAACAAGTTCGTGGTTGAATACGTTGGTGAAA
TAATCACAAGTGAAGAAGCTGAACGACGTGGAAAGTTATATGACTCAAAG
CAACAAACGGTACTACTTCCACCAAGATCGCCAATATACGAATGCAACAA
GAGCTGCAAATGTTCTATGGACTGCCCAAATCGCGTTATACAAAAAGGAC
TAACAACTAGGGTTATGGGTAAACCAAAAGTTCTTCCTTCGAAGGATATA
ATAAAAGATTCCAAATCAAAAACAAGTAGAGAAATTAAAACAAGCAAAAA
ACAAGAACGTAAAAAACCGATAGCCAAAAACACTCGCAAGATCAACCCTG
TTCCAACAACAATGAAGGTCGAGGATCTTTTGTCTTGTAAAGTTGCTGGT
TTGGAAACATTGGATGACCTAGCACGCAAATACAGAGGCAAATTGAATTT
ACAATTGAAATGTACATCAAAAGAACATACTACATTGAATGTAACCCTCA
ATCATAAAATGATAGTTTGGGAATTAGAATTAAATCGTGTTTGTAGTGCA
GACCCTGTCATAGCTGTTGAGAACTTTGTCGACGATGAAAGTCCTCCTGA
TTATTTCACCTACGTTCGTGAGAATATTGTTTCTACAAAGTGTGGGCGAG
AACTTCTAGATCCCAGCTTCCTGGTTGGTTGTGAATGTTTTCCAAGATGT
TCACCTGCCAATTGTCCGTGCCCAAGTAATAGTATGAGTAAATTTGCTTA
TGACCGATCAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016186XLOC_016186Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028551-proteinTCONS_00028551-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028551-exon-sc0000691-1575043694:11634..12187TCONS_00028551-exon-sc0000691-1575043694:11634..12187Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1575043694:11061..11163TCONS_00028551-exon-sc0000691-1575043694:11061..11163Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1575043694:10400..10554TCONS_00028551-exon-sc0000691-1575043694:10400..10554Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1575043694:6600..6693TCONS_00028551-exon-sc0000691-1575043694:6600..6693Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1575043694:4617..5268TCONS_00028551-exon-sc0000691-1575043694:4617..5268Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1510915933:11634..12187TCONS_00028551-exon-sc0000691-1510915933:11634..12187Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1510915933:11061..11163TCONS_00028551-exon-sc0000691-1510915933:11061..11163Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1510915933:10400..10554TCONS_00028551-exon-sc0000691-1510915933:10400..10554Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1510915933:6600..6693TCONS_00028551-exon-sc0000691-1510915933:6600..6693Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1510915933:4617..5268TCONS_00028551-exon-sc0000691-1510915933:4617..5268Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1491911889:11634..12187TCONS_00028551-exon-sc0000691-1491911889:11634..12187Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1491911889:11061..11163TCONS_00028551-exon-sc0000691-1491911889:11061..11163Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1491911889:10400..10554TCONS_00028551-exon-sc0000691-1491911889:10400..10554Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1491911889:6600..6693TCONS_00028551-exon-sc0000691-1491911889:6600..6693Clytia hemisphaericaexon
TCONS_00028551-exon-sc0000691-1491911889:4617..5268TCONS_00028551-exon-sc0000691-1491911889:4617..5268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:4617..12187 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6237	12.1562	6.04481	5.47692	14.151	10.9581	11.1917	11.6171	10.5047	11.8589	6.84769	6.81341	5.82445	5.43116	7.58627	9.02266	15.3007	11.9593	1.59353	2.16485	6.05178	7.03234	21.7111	21.5205	11.5487	14.7674	2.63249	2.50158	12.5518	13.7697
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007728Pre-SET_dom
IPR003616Post-SET_dom
IPR001214SET_dom
IPR011381Histone_H3-K9_MeTrfase
Vocabulary: Biological Process
TermDefinition
GO:0034968histone lysine methylation
Vocabulary: Molecular Function
TermDefinition
GO:0018024histone-lysine N-methyltransferase activity
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034968 histone lysine methylation
cellular_component GO:0005634 nucleus
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00028551 vs. Swiss-Prot (Human)
Match: SUV92 (Histone-lysine N-methyltransferase SUV39H2 OS=Homo sapiens GN=SUV39H2 PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.293e-87
Identity = 146/293 (49.83%), Postives = 188/293 (64.16%), Query Frame = 1 
Query:  307 WELELNRVCSADPVIAVENFVDDESPPDYFTYVRENIVSTKCGRELLDPSFLVGCEC----FPRCSPANCPCPSNSMSKFAYDRSKRVLLPPRSPIYECNKSCKCSMDCPNRVIQKGLTTRVCIFRTDNGRGWGLKTREFIPKNKFVVEYVGEIITSEEAERRGKLYDSKQQTYLFDLDFHDEDATFTVDAYRYGNVSHFINHSCDPNLQVYSVWVDTLDPRLPRIGLFATRDINAGEELSFDYMMTGSNEGQKSA---SPGMRXXXXXXXXXELPNIDRHFCACGASNCRKY 1164
            W+ ELNR  +   +I VEN VD E PP  F Y+ E       G  L++ +   GC C    F +C      CP+ +    AY++++++ +PP +PIYECN  C+C  DCPNR++QKG    +CIFRT NGRGWG+KT   I +  FV+EYVGE+ITSEEAERRG+ YD+K  TYLFDLD+  ++  FTVDA RYGNVSHF+NHSCDPNLQV++V++D LD RLPRI LF+TR INAGEEL+FDY M GS +    +   SP  ++              R  C CGA  CR Y
Sbjct:  140 WQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINE--YKPAPGISLVNEATF-GCSCTDCFFQKC------CPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDE--FTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRV-------------RTVCKCGAVTCRGY 408
The following BLAST results are available for this feature:
BLAST of TCONS_00028551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUV921.293e-8749.83Histone-lysine N-methyltransferase SUV39H2 OS=Homo... [more]
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