TCONS_00028560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028560
Unique NameTCONS_00028560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028560 ID=TCONS_00028560|Name=TCONS_00028560|organism=Clytia hemisphaerica|type=transcript|length=887bp
CTTTGAATCtatagaatttttaaattaaaaaaatactgTTCATCTTTTAG
AGGAAATATTATTACTACTACAAGTTTTAGAAAAGAGAGCTGGCAAAGAT
GCGACTTGAGACTTTTTTGTTGGTAGTGTCACTGTTTGGTGCTGCTTACT
CAGCTGCTCCAAAAGTTCCAAAGATTTATTCCtatcaatttcaaattcaa
ttggAAAATCAGACTTGTTCCATATCACTGATTGAGAATCGAGATGTACT
TTCTGATAATACTTATGGAACATTGAAAAGTTCTTTGACATCAATTATTA
GTAATCTGTACAAGTCAGCATCAGATTCGAGTGAATTCTATTCAACATCA
GCTGGAAAATTCCAATGTATCTCGAAAAGCAAAATCGCTTTCTCTTTCAT
GGTCAGTTTCTCATCAAATGAAACCACCAAAGATATTGCAAAGCTGATTC
TCCAAACCGAAACGCAAGATGCTGATCTTGGAGGCTACAAAGTGGACCCA
AAAATTCTAGAATCCGAAGTGAAAAGTTTTGTACCGGCAACACGAAATAC
CCTCAAAACTGAAGTACCCAATTACATTTTCTGTGACCCAAGACATTATG
AGCATTTCCGGGAACAGCTTTCCAAAAAGTTAATTGTGGTTACCGATGAT
GGAGTTTCCACGATCGATAAAGCTCAAATTATTTTCCCAAGGCATTCGTG
TGGTGATACTACTGCAAGATTCAAACAAGctacttttgatttttatgttt
ctgTGTTGAACGAGCCCTTCGATTTCGATAAGAAACATACATCTCTGGCA
TACAGAGTGATTGATCAAATGATTTATGATGGCTCCACCTGGAAAGTTGG
ACTTGCCTTCGATAAGAAGATTGACAGTATAACACTT
Run BLAST on NCBI

transcript from alignment at sc0000691:213740..216251-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028560 ID=TCONS_00028560|Name=TCONS_00028560|organism=Clytia hemisphaerica|type=transcript|length=2512bp|location=Sequence derived from alignment at sc0000691:213740..216251- (Clytia hemisphaerica)
CTTTGAATCTATAGAATTTTTAAATTAAAAAAATACTGTTCATCTTTTAG
AGGAAATATTATTACTACTACAAGTTTTAGAAAAGAGAGCTGGCAAAGAT
GCGACTTGAGACTTTTTTGTTGGTAGTGTCACTGTTTGGTGCTGCTTACT
CAGGTATTATTTAACCGGGGGGGTCTCTGTAAGGGTCCAAAAATCACGAA
ATTTAAAATTTCCTCTCTCAAAGGGTCGTGATTTTCCAAAGTTAAAAAAA
AAATGAAAATCGATAGAAATTTTAAGCAAAGTCTCTTAGGGTCCCAAAAA
CGCCAATTTTTCCTCTCTCTAAGGGTCGATTTTCGATTTTTGGCTCGGCC
ATACCCGACATTGACAACTCACAAACCTAGTACCCCCCCCCCGGGTTCTT
AACTTTATTGGAGTCTATGGCTAAAAGGTTTTCATTGACCATTTCTATTA
TAAAGCTTGTTACTGATTATATTTAATCAAAGTCTTAAAAAGGAAAGACC
CTTTTCAACGTGTTTTCCTTGGGGTTGAATAAGTTATTAAACTGAAGATT
TTCATTTTTAATTATATTACTTTGAATGAAGCCTCTTCACTTTCTTGGAA
AATTATGATTGAAGAAAGGGTTGAATATAAAACATACTAATAGAGAGTTT
AGACCACATACTATGAATGTATTTTTCTAATGCCTTCTTTGGATCTAGGT
AATGAAAACTTTGATGGTTTTATCAGCTTCTTCATTTCATCTTTAGCTGC
TCCAAAAGTTCCAAAGATTTATTCCTATCAATTTCAAATTCAATTGGAAA
ATCAGACTTGTTCCATATCACTGATTGAGAATCGAGATGTACTTTCTGAT
AATACTTATGGAACATTGAAAAGTTCTTTGACATCAATTATTAGTAATCT
GTACAAGTCAGGTATGTAATATTTTATGCAAGATACTAAAATTGATATGA
TGCACGTAGAGAAAGTATCTAATTCACATCTATTGTTTCATTTTCAAAAC
AAGGTTAAAACGTATGCGTATATTTTTCTTTTATAAACTGTTAGTCGTTA
TTCTACGCAAAACACTACGAGGAATGGATACGTAAGGGTGGTAAAGTCAC
TTTCGGTCGGAGTTGTGGATGGTGACATTTGTCGTTCTTTTTTTAAATTT
GTCGTTCTTTTTTAATGTTGCGAAGTAGGCACTTTCTCCCCCTCAATGAT
ATGGACTCTCCCCATCTGGGAATGAGTCTTTCTCCTTACAAAGTAGAGAT
TCCTCCCTTTTCAAGTGGCTATTCATAGCGTTGACCAGTTACATCATATT
CATTCGATTGAAAAATTATTTACCTCTTTGGTAACAGTAAGAATATGGTC
TTGGAAAAGGTTTCTTTGAATCACTATCTCAATGATATATAACAAGGAGC
CTCTTAGACTCTCAAAACAAGAGTTCATCATCAGAATAAAGAATATTTAA
CAAATGAAATAAAGCATGAAGTCGTCTCCGATAATCTTTTTTGGCTCGTT
TTTAAATACTGTTATCCCAAATATTACAATTACCAAAATATCACTCAGTT
AACTAAGAATTCATTTTGAAAATAAATTTTATCAATTTGACTTAGTAATG
TTACAATTACACTCGCTCAATGAAAGTAGTCTTTTCATATTTCAGCATCA
GATTCGAGTGAATTCTATTCAACATCAGCTGGAAAATTCCAATGTATCTC
GAAAAGCAAAATCGCTTTCTCTTTCATGGTCAGTTTCTCATCAAATGAAA
CCACCAAAGATATTGCAAAGCTGATTCTCCAAACCGAAACGCAAGATGCT
GATCTTGGAGGCTACAAAGTGGACCCAAAAATTCTAGAATCCGAAGTGAA
AAGTTTTGTACCGGCAACACGAAATACCCTCAAAACTGAAGTACCCAATT
ACATTTTCTGTGACCCAAGACATTATGAGCATTTCCGGGAACAGCTTTCC
AAAAAGTTAATTGTGGTTACCGATGATGGAGTTTCCACGATCGATAAAGC
TCAAATTATTTTCCCAAGGCATTCGTGTGGTGATACTACTGCAAGATTCA
AACAAGCTACTTTTGATTTTTATGTTTCTGTGTTGAACGAGCCCTTCGAT
TTCGATAAGAAACATACATCTCTGGCATACAGAGTGATTGATCAAATGAT
TTATGATGGCTCCACCTGGAAAGTTGGACTTGCCTTCGATAAGAAGGTTT
GTTTCTCATCTATATTGACCCAAGTAAAGTTTCTTCGAAATTTTGTTGCA
AGAAATCTTTTCTTTCCACAAAAATATATATAAATATTCTGAACAATTTC
ACGTGGGTATACATTTAATATTTTTATTGCAGAAAGAATAATATTTTTGA
GATTACTCTAATTTGAATGCAAGGCTCCGTTTTTTATTCATCACAGGGTT
TGTGTGTTTGTGTCCAATAATGAGCCTCGTGGTCTAGTGAGATTTTTCTT
TTGAAAATTACGCCCTCAAGACACTACATAGGCACTACTTTCAGATTGAC
AGTATAACACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016192XLOC_016192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028560-exon-sc0000691-1575043694:216099..216251TCONS_00028560-exon-sc0000691-1575043694:216099..216251Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1575043694:215341..215505TCONS_00028560-exon-sc0000691-1575043694:215341..215505Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1575043694:214056..214606TCONS_00028560-exon-sc0000691-1575043694:214056..214606Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1575043694:213740..213757TCONS_00028560-exon-sc0000691-1575043694:213740..213757Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1510915933:216099..216251TCONS_00028560-exon-sc0000691-1510915933:216099..216251Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1510915933:215341..215505TCONS_00028560-exon-sc0000691-1510915933:215341..215505Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1510915933:214056..214606TCONS_00028560-exon-sc0000691-1510915933:214056..214606Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1510915933:213740..213757TCONS_00028560-exon-sc0000691-1510915933:213740..213757Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1491911889:216099..216251TCONS_00028560-exon-sc0000691-1491911889:216099..216251Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1491911889:215341..215505TCONS_00028560-exon-sc0000691-1491911889:215341..215505Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1491911889:214056..214606TCONS_00028560-exon-sc0000691-1491911889:214056..214606Clytia hemisphaericaexon
TCONS_00028560-exon-sc0000691-1491911889:213740..213757TCONS_00028560-exon-sc0000691-1491911889:213740..213757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:213740..216251 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.490965	0	0	0	0	0	0	2.13701e-07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top