TCONS_00028563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028563
Unique NameTCONS_00028563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028563 ID=TCONS_00028563|Name=TCONS_00028563|organism=Clytia hemisphaerica|type=transcript|length=410bp
CAATAAGCCAATTTTAGTATTTTCAGTTTCCACCATTTACACTGTGTCCT
CTTCCTCTTCATTCTCAGCTTCATAATCTTGATTCAAAGCATCATATCTC
AATTGTCGTCCACCTCTTCTATAGCTAGATTGGCTGTATTGATTGCCGCG
TCTCTTAGAATATATAGGCTTCCTAGCTATATGTCTTCCACCGAGAGCAG
AAGAGGAGGATAGACTTGCATTTGTCGGAAGTTGGGGTAGGAATCTTCTG
TTAGGTAGATATTCCTTCTGTGCTTGAATGTCTGCATAACAGTCGTTTGA
CAGACTATTGAAAGTTGGTCTGTTGGCAGCACCAtgattttcagactttg
ttGTCAGCTTTCGACGTCCGATACACATATTCATTTTCATCGGTCGGAAC
CGGACAGACA
Run BLAST on NCBI

protein sequence of TCONS_00028563-protein

>TCONS_00028563-protein ID=TCONS_00028563-protein|Name=TCONS_00028563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
SVRFRPMKMNMCIGRRKLTTKSENHGAANRPTFNSLSNDCYADIQAQKEY
LPNRRFLPQLPTNASLSSSSALGGRHIARKPIYSKRRGNQYSQSSYRRGG
RQLRYDALNQDYEAENEEEEDTV
Run BLAST on NCBI

transcript from alignment at sc0000691:90858..91267

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028563 ID=TCONS_00028563|Name=TCONS_00028563|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at sc0000691:90858..91267 (Clytia hemisphaerica)
TGTCTGTCCGGTTCCGACCGATGAAAATGAATATGTGTATCGGACGTCGA
AAGCTGACaacaaagtctgaaaatcaTGGTGCTGCCAACAGACCAACTTT
CAATAGTCTGTCAAACGACTGTTATGCAGACATTCAAGCACAGAAGGAAT
ATCTACCTAACAGAAGATTCCTACCCCAACTTCCGACAAATGCAAGTCTA
TCCTCCTCTTCTGCTCTCGGTGGAAGACATATAGCTAGGAAGCCTATATA
TTCTAAGAGACGCGGCAATCAATACAGCCAATCTAGCTATAGAAGAGGTG
GACGACAATTGAGATATGATGCTTTGAATCAAGATTATGAAGCTGAGAAT
GAAGAGGAAGAGGACACAGTGTAAATGGTGGAAACTGAAAATACTAAAAT
TGGCTTATTG

Coding sequence (CDS) from alignment at sc0000691:90858..91267

>TCONS_00028563 ID=TCONS_00028563|Name=TCONS_00028563|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000691:90858..91267 (Clytia hemisphaerica)
TCTGTCCGGTTCCGACCGATGAAAATGAATATGTGTATCGGACGTCGAAA
GCTGACaacaaagtctgaaaatcaTGGTGCTGCCAACAGACCAACTTTCA
ATAGTCTGTCAAACGACTGTTATGCAGACATTCAAGCACAGAAGGAATAT
CTACCTAACAGAAGATTCCTACCCCAACTTCCGACAAATGCAAGTCTATC
CTCCTCTTCTGCTCTCGGTGGAAGACATATAGCTAGGAAGCCTATATATT
CTAAGAGACGCGGCAATCAATACAGCCAATCTAGCTATAGAAGAGGTGGA
CGACAATTGAGATATGATGCTTTGAATCAAGATTATGAAGCTGAGAATGA
AGAGGAAGAGGACACAGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016195XLOC_016195Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028563-proteinTCONS_00028563-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028563-exon-sc0000691-1491911889:90858..91267TCONS_00028563-exon-sc0000691-1491911889:90858..91267Clytia hemisphaericaexon
TCONS_00028563-exon-sc0000691-1510915933:90858..91267TCONS_00028563-exon-sc0000691-1510915933:90858..91267Clytia hemisphaericaexon
TCONS_00028563-exon-sc0000691-1575043694:90858..91267TCONS_00028563-exon-sc0000691-1575043694:90858..91267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:90858..91267 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.209595	1.08296	0.491533	0.281535	0.570522	0.505279	0.373024	0.657374	0.242714	1.10022	0.175817	0.662513	0.790878	0.693786	0.785519	0	0	0.385327	0	0.263566	0.226416	0	0	1.1245	1.12537
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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