TCONS_00028567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028567
Unique NameTCONS_00028567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028567 ID=TCONS_00028567|Name=TCONS_00028567|organism=Clytia hemisphaerica|type=transcript|length=219bp
TCCCCTGCAGAAACAGAAGTTTCCCCTGGTGACAATTTAAATGAAAGTAG
CGACGAACTCTTGATTGTACCACCTGTTGATTATCCGCAAGGAGAAGAAG
ACAAGGATGAGGTGGATTGTCAGGAACCTCCTATGGAAATTTCTGCTTCA
TTCGTCCGTTCCtcgtccagaatcgaaagttcATCAAGTTCCGATGATTC
TTCAAGTGATGATGAAGGT
Run BLAST on NCBI

transcript from alignment at sc0000691:209056..209274

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028567 ID=TCONS_00028567|Name=TCONS_00028567|organism=Clytia hemisphaerica|type=transcript|length=219bp|location=Sequence derived from alignment at sc0000691:209056..209274 (Clytia hemisphaerica)
ACCTTCATCATCACTTGAAGAATCATCGGAACTTGATgaactttcgattc
tggacgaGGAACGGACGAATGAAGCAGAAATTTCCATAGGAGGTTCCTGA
CAATCCACCTCATCCTTGTCTTCTTCTCCTTGCGGATAATCAACAGGTGG
TACAATCAAGAGTTCGTCGCTACTTTCATTTAAATTGTCACCAGGGGAAA
CTTCTGTTTCTGCAGGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016199XLOC_016199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028567-exon-sc0000691-1491911889:209056..209274TCONS_00028567-exon-sc0000691-1491911889:209056..209274Clytia hemisphaericaexon
TCONS_00028567-exon-sc0000691-1510915933:209056..209274TCONS_00028567-exon-sc0000691-1510915933:209056..209274Clytia hemisphaericaexon
TCONS_00028567-exon-sc0000691-1575043694:209056..209274TCONS_00028567-exon-sc0000691-1575043694:209056..209274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:209056..209274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.3867	31.8576	17.0722	6.95936	44.0562	21.4239	9.69263	16.6359	12.706	11.8038	14.0031	8.36827	19.2203	6.07491	9.27532	12.2509	33.0139	36.7386	14.6926	15.3748	48.5945	44.4425	20.1696	24.8861	21.5849	28.896	1.72292	5.51624	5.5785	2.8418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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