TCONS_00028570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028570
Unique NameTCONS_00028570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028570 ID=TCONS_00028570|Name=TCONS_00028570|organism=Clytia hemisphaerica|type=transcript|length=388bp
CTAAGAAGCAGTCGTCTGTCGCTTTATCAACGTGTGAAGCTGAGTACATG
GCTATATCAATTACTTGTCAAGAGACAATTTATCTCAATCGTTTGATCAA
CGAATTACTCCAATCGAAAACGCAACCAATTATTGTCAAAAATGACAATC
AGGGTGCCTTAGCACTCGTAAAGAATCCTGTGAAGCATACGAAAGCGAAG
CATATAGATATCCGCTACCACTTCATTAGGGAATGTTATGATGAAGGAAG
TATTTTGTTAGATTATGTCCCGTCCGGGGACAATGTTGCTGATATCTTTA
CGAAACCACCAAAGAAGCAGTATCTACTCAAATTCGAACAATTTCTCTTT
GGACAAAagtaaaaaggagaaagttgcCCTCAAGGGGG
Run BLAST on NCBI

protein sequence of TCONS_00028570-protein

>TCONS_00028570-protein ID=TCONS_00028570-protein|Name=TCONS_00028570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
KKQSSVALSTCEAEYMAISITCQETIYLNRLINELLQSKTQPIIVKNDNQ
GALALVKNPVKHTKAKHIDIRYHFIRECYDEGSILLDYVPSGDNVADIFT
KPPKKQYLLKFEQFLFGQK
Run BLAST on NCBI

transcript from alignment at sc0000691:236271..236658

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028570 ID=TCONS_00028570|Name=TCONS_00028570|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at sc0000691:236271..236658 (Clytia hemisphaerica)
CCCCCTTGAGGgcaactttctcctttttactTTTGTCCAAAGAGAAATTG
TTCGAATTTGAGTAGATACTGCTTCTTTGGTGGTTTCGTAAAGATATCAG
CAACATTGTCCCCGGACGGGACATAATCTAACAAAATACTTCCTTCATCA
TAACATTCCCTAATGAAGTGGTAGCGGATATCTATATGCTTCGCTTTCGT
ATGCTTCACAGGATTCTTTACGAGTGCTAAGGCACCCTGATTGTCATTTT
TGACAATAATTGGTTGCGTTTTCGATTGGAGTAATTCGTTGATCAAACGA
TTGAGATAAATTGTCTCTTGACAAGTAATTGATATAGCCATGTACTCAGC
TTCACACGTTGATAAAGCGACAGACGACTGCTTCTTAG

Coding sequence (CDS) from alignment at sc0000691:236271..236658

>TCONS_00028570 ID=TCONS_00028570|Name=TCONS_00028570|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000691:236271..236658 (Clytia hemisphaerica)
ttactTTTGTCCAAAGAGAAATTGTTCGAATTTGAGTAGATACTGCTTCT
TTGGTGGTTTCGTAAAGATATCAGCAACATTGTCCCCGGACGGGACATAA
TCTAACAAAATACTTCCTTCATCATAACATTCCCTAATGAAGTGGTAGCG
GATATCTATATGCTTCGCTTTCGTATGCTTCACAGGATTCTTTACGAGTG
CTAAGGCACCCTGATTGTCATTTTTGACAATAATTGGTTGCGTTTTCGAT
TGGAGTAATTCGTTGATCAAACGATTGAGATAAATTGTCTCTTGACAAGT
AATTGATATAGCCATGTACTCAGCTTCACACGTTGATAAAGCGACAGACG
ACTGCTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016202XLOC_016202Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028570-proteinTCONS_00028570-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028570-exon-sc0000691-1491911889:236271..236658TCONS_00028570-exon-sc0000691-1491911889:236271..236658Clytia hemisphaericaexon
TCONS_00028570-exon-sc0000691-1510915933:236271..236658TCONS_00028570-exon-sc0000691-1510915933:236271..236658Clytia hemisphaericaexon
TCONS_00028570-exon-sc0000691-1575043694:236271..236658TCONS_00028570-exon-sc0000691-1575043694:236271..236658Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:236271..236658 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.34239	6.95793	2.91735	2.63462	38.7561	27.035	19.1113	19.5616	7.0148	26.6875	39.759	29.436	11.3362	6.02327	8.21574	9.90374	4.46363	5.7951	13.9056	21.3858	8.43175	15.9835	5.45404	6.40475	11.7039	16.143	10.3273	19.7228	3.95975	3.81023
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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