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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028589 ID=TCONS_00028589|Name=TCONS_00028589|organism=Clytia hemisphaerica|type=transcript|length=3981bpRun BLAST on NCBI protein sequence of TCONS_00028589-protein >TCONS_00028589-protein ID=TCONS_00028589-protein|Name=TCONS_00028589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp LAATNQIIIPYLSKMLNSSNMAGFFTKSISQIIGSSYYNKTPEAGSQYILRun BLAST on NCBI transcript from alignment at sc0000692:149298..158949+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028589 ID=TCONS_00028589|Name=TCONS_00028589|organism=Clytia hemisphaerica|type=transcript|length=9652bp|location=Sequence derived from alignment at sc0000692:149298..158949+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000692:149298..158949+ >TCONS_00028589 ID=TCONS_00028589|Name=TCONS_00028589|organism=Clytia hemisphaerica|type=CDS|length=16230bp|location=Sequence derived from alignment at sc0000692:149298..158949+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028589 vs. Swiss-Prot (Human)
Match: CAST2 (Cytosolic arginine sensor for mTORC1 subunit 2 OS=Homo sapiens GN=CASTOR2 PE=1 SV=3) HSP 1 Score: 194.126 bits (492), Expect = 6.802e-54 Identity = 128/342 (37.43%), Postives = 187/342 (54.68%), Query Frame = 2
Query: 218 MELYILDNKLQVCSCPREKIPLLCHSIIRMAXXXXXXX-XXXXXTEA-ENMTLILTEEDFKQLPENVELETSGQVWRVLTVSVGALGSFNEIMGVSKIAKSAIGPLADHNVSVLXLGSFNEIMGVSKIAKSAIGPLADHNVSVLCLSTYQSDYILVQESQLNEAIQCLSSYFKIFN--EDHQRVSESKATTPLSPTPR-KSRPIVHPYQSPDKIFHIAGLDASKLSGVVQVLLELMFF------PKTSGEE---FSFFHFTIVHGDISLVLDDDSFNKFPKNTLYSSQSSKDGNWKIISIGEQPLGFVECGIVAQVVEPLASSQVSSYYLSTYDIEYCMVHE 1201
MEL+IL+++LQV S +E IPL + +I++A L + FFSLTE E+ T+I+ EE F +LP + L + W L V VS S ++ +GV+KIAKS I PLAD N+SV LSTYQ+D+ILV+E L LSS F I +E+ T P+ RP++HP SP F + LD L V +L+++MF+ P +G++ FF F+++ G ISLV+D + +FP N L++S S + WK++ IG QPLGF ECGIVAQ+ EPLA++ + +YY+ST+ ++ +V E
Sbjct: 1 MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGFLELPSSEHLSVADATWLALNV-----------------------------VSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDLPFVTHTLSSEFTILRVVNGETVAAENLGITNGFVKPKLVQRPVIHPLSSPSNRFCVTSLDPDTLPAVATLLMDVMFYSNGVKDPMATGDDCGHIRFFSFSLIEGYISLVMDVQTQQRFPSNLLFTSASGE--LWKMVRIGGQPLGFDECGIVAQISEPLAAADIPAYYISTFKFDHALVPE 311 The following BLAST results are available for this feature:
BLAST of TCONS_00028589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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