TCONS_00028590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028590
Unique NameTCONS_00028590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028590 ID=TCONS_00028590|Name=TCONS_00028590|organism=Clytia hemisphaerica|type=transcript|length=1425bp
AAAAAAATGGCTAATTTCAGGATTCAagccttagcaacctggttgcttat
cAAAAATGTATGCATTACTAGTATTTGATTCCGGGATAATCAGTGATTGG
GAAGTAATAATAATTAATTAGGGCAATATTTAGTTCAAGTTTAAGAATTG
ACCTCACTGTTACAATAATTcacaaatttcttttctttattttttagatc
attaaaaaaaaattaatttaagaaatatgtcAGAATGTATAGCACAGCAG
GAAGAAATTATTCATCAAGAAAACATCAAACACATCAGTTGGGATGATTT
GGACAAGCGGAAATATTATACTATCGGTCCCACTATTATGTTGGGAGTTC
GAATTATTGTTTACCCCCCAATGCTGATCAAAACCCGTTTAcaagttcaa
aaacataaaaGTAATTATAATGGGACTTTAGATGCTTTTCGTAAGATTTA
TAAATATGAAGGAATTCGTGGTTATTACAAAGGCTTTGGTACAAGTACTT
TGAGTATGTTTTCTGGACAGATTTATATCACCACTTTTGAAGTTATCCGT
GAAAAAGCTCCAACCAGTCAGGCTTCAAAAAGTCTTATTGCTGGGACGGT
TGCTTCACTAGCAGGACAAACTTTGACAGTCCCAATTGATATAATCTCAC
AGAAACAAATGATGTATGGACAGAGAATACAAAAAGATGGTCAACCGAAA
CTTACTTCAGCATATTCAGTTGCTCAAAAAATTTTCCGTCAAAATGGATT
AAGAGGTTTTTACAAAGGATATGTTGCTTCGATCCTGACTTACACCCCAA
ACTCTGGGATTTGGTGGGCTGCTTATTATAAGTTTACACAGTTCTACGGA
AGTATGCGGCCTGCAGGGACACCAGATATGGTGATACAGGGAATGAGTGG
ACCATCTGCGGCCATTGTTGCCTCTTGGTTAACAAATCCAAATGATATCA
TCAGAACAAGGCTACAGgttgAAGGTGGAAAAGATACTATCAAAACAact
ttgttgaaattgatcaaagaAGAAGGTGTATTATCATTATGGACTAAGGG
GTTGACTGCCAGATTTCTGTCTGCTATACCCTCTGGTTTCTTCCTAAGTG
TTTCTTATGAACTTGTCAAAAAGTTGAGCATGAAGCCTGAAGCTAAGATG
AAACAATGTGATGGGTGACCAAATCAAGTTTTGTTAGAGTTGCTGGTTGT
TGGTGGTGAAAGTTTCATAGATTGCATCAAAGAAGATAGCTGTAGTGAAA
AAAAGACTAGTTTAGTTAGGTAGATGAGTAgtacttatttttaggtagat
tttttttatcttaacCTTACCTTATAGAGCTTTTATTTGTAGTTAGAGTT
TGGCTGTCTTTAtttctttattgaaaatatcttttaaggaAACTGCCTCA
AGCTGTGATTTTTTCGGCACTTGGC
Run BLAST on NCBI

protein sequence of TCONS_00028590-protein

>TCONS_00028590-protein ID=TCONS_00028590-protein|Name=TCONS_00028590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MSECIAQQEEIIHQENIKHISWDDLDKRKYYTIGPTIMLGVRIIVYPPML
IKTRLQVQKHKSNYNGTLDAFRKIYKYEGIRGYYKGFGTSTLSMFSGQIY
ITTFEVIREKAPTSQASKSLIAGTVASLAGQTLTVPIDIISQKQMMYGQR
IQKDGQPKLTSAYSVAQKIFRQNGLRGFYKGYVASILTYTPNSGIWWAAY
YKFTQFYGSMRPAGTPDMVIQGMSGPSAAIVASWLTNPNDIIRTRLQVEG
GKDTIKTTLLKLIKEEGVLSLWTKGLTARFLSAIPSGFFLSVSYELVKKL
SMKPEAKMKQCDG
Run BLAST on NCBI

transcript from alignment at sc0000692:175469..177147+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028590 ID=TCONS_00028590|Name=TCONS_00028590|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at sc0000692:175469..177147+ (Clytia hemisphaerica)
AAAAAAATGGCTAATTTCAGGATTCAagccttagcaacctggttgcttat
cAAAAATGTATGCATTACTAGTATTTGATTCCGGGATAATCAGTGATTGG
GAAGTAATAATAATTAATTAGGGCAATATTTAGTTCAAGTTTAAGAATTG
ACCTCACTGTTACAATAATTcacaaatttcttttctttattttttagatc
attaaaaaaaaattaatttaagaaatatgtcAGAATGTATAGCACAGCAG
GAAGAAATTATTCATCAAGAAAACATCAAACACATCAGTTGGGATGATTT
GGACAAGCGGAAATATTATACTATCGGTCCCACTATTATGTTGGGAGTTC
GAATTATTGTTTACCCCCCAATGCTGATCAAAACCCGTTTAcaagttcaa
aaacataaaaGTAATTATAATGGGACTTTAGATGCTTTTCGTAAGATTTA
TAAATATGAAGGAATTCGTGGTTATTACAAAGGCTTTGGTACAAGTACTT
TGAGTATGTTTTCTGGACAGATTTATATCACCACTTTTGAAGTTATCCGT
GAAAAAGCTCCAACCAGTCAGGCTTCAAAAAGTCTTATTGCTGGGACGGT
TGCTTCACTAGCAGGACAAACTTTGACAGTCCCAATTGATATAATCTCAC
AGAAACAAATGATGTATGGACAGAGAATACAAAAAGATGGTCAACCGAAA
CTTACTTCAGCATATTCAGTTGCTCAAAAAATTTTCCGTCAAAATGGATT
AAGAGGTTTTTACAAAGGATATGTTGCTTCGATCCTGACTTACACCCCAA
ACTCTGGGATTTGGTGGGCTGCTTATTATAAGTTTACACAGTTCTACGGA
AGTATGCGGCCTGCAGGGACACCAGATATGGTGATACAGGGAATGAGTGG
ACCATCTGCGGCCATTGTTGCCTCTTGGTTAACAAATCCAAATGATATCA
TCAGAACAAGGCTACAGGTGATTGGTTTTATTATTcggaatgttttgaaa
atgtcatTTATAAATCAAGAGTATGGATTCTGGTGATATCATTCAGTTAT
TATTAGCTCATAAACTCATCAACTTAGCATATTTTAACATCATGAAAGAT
ATCGTTTAGTATTTTACTTGGCTCCGACTTCATTGAGCACTCTACAGCAT
CAATCATAAACAAAACTAAACATTTTGTCAGTCTTGTTTGTTAATCGTTT
GTTAatcgtttttattttcaggttgAAGGTGGAAAAGATACTATCAAAAC
AactttgttgaaattgatcaaagaAGAAGGTGTATTATCATTATGGACTA
AGGGGTTGACTGCCAGATTTCTGTCTGCTATACCCTCTGGTTTCTTCCTA
AGTGTTTCTTATGAACTTGTCAAAAAGTTGAGCATGAAGCCTGAAGCTAA
GATGAAACAATGTGATGGGTGACCAAATCAAGTTTTGTTAGAGTTGCTGG
TTGTTGGTGGTGAAAGTTTCATAGATTGCATCAAAGAAGATAGCTGTAGT
GAAAAAAAGACTAGTTTAGTTAGGTAGATGAGTAgtacttatttttaggt
agattttttttatcttaacCTTACCTTATAGAGCTTTTATTTGTAGTTAG
AGTTTGGCTGTCTTTAtttctttattgaaaatatcttttaaggaAACTGC
CTCAAGCTGTGATTTTTTCGGCACTTGGC

Coding sequence (CDS) from alignment at sc0000692:175469..177147+

>TCONS_00028590 ID=TCONS_00028590|Name=TCONS_00028590|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at sc0000692:175469..177147+ (Clytia hemisphaerica)
atgtcAGAATGTATAGCACAGCAGGAAGAAATTATTCATCAAGAAAACAT
CAAACACATCAGTTGGGATGATTTGGACAAGCGGAAATATTATACTATCG
GTCCCACTATTATGTTGGGAGTTCGAATTATTGTTTACCCCCCAATGCTG
ATCAAAACCCGTTTAcaagttcaaaaacataaaaGTAATTATAATGGGAC
TTTAGATGCTTTTCGTAAGATTTATAAATATGAAGGAATTCGTGGTTATT
ACAAAGGCTTTGGTACAAGTACTTTGAGTATGTTTTCTGGACAGATTTAT
ATCACCACTTTTGAAGTTATCCGTGAAAAAGCTCCAACCAGTCAGGCTTC
AAAAAGTCTTATTGCTGGGACGGTTGCTTCACTAGCAGGACAAACTTTGA
CAGTCCCAATTGATATAATCTCACAGAAACAAATGATGTATGGACAGAGA
ATACAAAAAGATGGTCAACCGAAACTTACTTCAGCATATTCAGTTGCTCA
AAAAATTTTCCGTCAAAATGGATTAAGAGGTTTTTACAAAGGATATGTTG
CTTCGATCCTGACTTACACCCCAAACTCTGGGATTTGGTGGGCTGCTTAT
TATAAGTTTACACAGTTCTACGGAAGTATGCGGCCTGCAGGGACACCAGA
TATGGTGATACAGGGAATGAGTGGACCATCTGCGGCCATTGTTGCCTCTT
GGTTAACAAATCCAAATGATATCATCAGAACAAGGCTACAGgttgAAGGT
GGAAAAGATACTATCAAAACAactttgttgaaattgatcaaagaAGAAGG
TGTATTATCATTATGGACTAAGGGGTTGACTGCCAGATTTCTGTCTGCTA
TACCCTCTGGTTTCTTCCTAAGTGTTTCTTATGAACTTGTCAAAAAGTTG
AGCATGAAGCCTGAAGCTAAGATGAAACAATGTGATGGGTGAatgtcAGA
ATGTATAGCACAGCAGGAAGAAATTATTCATCAAGAAAACATCAAACACA
TCAGTTGGGATGATTTGGACAAGCGGAAATATTATACTATCGGTCCCACT
ATTATGTTGGGAGTTCGAATTATTGTTTACCCCCCAATGCTGATCAAAAC
CCGTTTAcaagttcaaaaacataaaaGTAATTATAATGGGACTTTAGATG
CTTTTCGTAAGATTTATAAATATGAAGGAATTCGTGGTTATTACAAAGGC
TTTGGTACAAGTACTTTGAGTATGTTTTCTGGACAGATTTATATCACCAC
TTTTGAAGTTATCCGTGAAAAAGCTCCAACCAGTCAGGCTTCAAAAAGTC
TTATTGCTGGGACGGTTGCTTCACTAGCAGGACAAACTTTGACAGTCCCA
ATTGATATAATCTCACAGAAACAAATGATGTATGGACAGAGAATACAAAA
AGATGGTCAACCGAAACTTACTTCAGCATATTCAGTTGCTCAAAAAATTT
TCCGTCAAAATGGATTAAGAGGTTTTTACAAAGGATATGTTGCTTCGATC
CTGACTTACACCCCAAACTCTGGGATTTGGTGGGCTGCTTATTATAAGTT
TACACAGTTCTACGGAAGTATGCGGCCTGCAGGGACACCAGATATGGTGA
TACAGGGAATGAGTGGACCATCTGCGGCCATTGTTGCCTCTTGGTTAACA
AATCCAAATGATATCATCAGAACAAGGCTACAGgttgAAGGTGGAAAAGA
TACTATCAAAACAactttgttgaaattgatcaaagaAGAAGGTGTATTAT
CATTATGGACTAAGGGGTTGACTGCCAGATTTCTGTCTGCTATACCCTCT
GGTTTCTTCCTAAGTGTTTCTTATGAACTTGTCAAAAAGTTGAGCATGAA
GCCTGAAGCTAAGATGAAACAATGTGATGGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016213XLOC_016213Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028590-proteinTCONS_00028590-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028590-exon-sc0000692-1491911889:175469..176435TCONS_00028590-exon-sc0000692-1491911889:175469..176435Clytia hemisphaericaexon
TCONS_00028590-exon-sc0000692-1510915933:175469..176435TCONS_00028590-exon-sc0000692-1510915933:175469..176435Clytia hemisphaericaexon
TCONS_00028590-exon-sc0000692-1575043694:175469..176435TCONS_00028590-exon-sc0000692-1575043694:175469..176435Clytia hemisphaericaexon
TCONS_00028590-exon-sc0000692-1491911889:176690..177147TCONS_00028590-exon-sc0000692-1491911889:176690..177147Clytia hemisphaericaexon
TCONS_00028590-exon-sc0000692-1510915933:176690..177147TCONS_00028590-exon-sc0000692-1510915933:176690..177147Clytia hemisphaericaexon
TCONS_00028590-exon-sc0000692-1575043694:176690..177147TCONS_00028590-exon-sc0000692-1575043694:176690..177147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000692supercontigsc0000692:175469..177147 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.71845	4.83667	2.04813	1.7129	13.4167	11.0684	11.8907	11.167	10.8915	10.5674	9.84314	4.33309	6.73315	6.40806	7.4717	7.62715	11.3015	9.67552	6.04783	7.10752	8.71652	8.04917	21.0081	20.3159	11.7155	13.6149	8.12117	6.48968	12.9855	12.3064
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom
Blast
[Close]
BLAST of TCONS_00028590 vs. Swiss-Prot (Human)
Match: S2544 (Solute carrier family 25 member 44 OS=Homo sapiens GN=SLC25A44 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.422e-84
Identity = 145/306 (47.39%), Postives = 200/306 (65.36%), Query Frame = 2 
Query:  266 QENIKHISWDDLDKRKYYTIGPTIMLGVRIIVYPPMLIKTRLQVQKHKSNYNGTLDAFRKIYKYEGIRGYYKGFGTSTLSMFSGQIYITTFEVIRE-KAPTSQAS--KSLIAGTVASLAGQTLTVPIDIISQKQMMYGQ-----RIQKDGQPKLTSAYSVAQ------KIFRQNGLRGFYKGYVASILTYTPNSGIWWAAYYKFTQFYGSMRPAGTPDMVIQGMSGPSAAIVASWLTNPNDIIRTRLQVEGGKDTIKTTLLKLIKEEGVLSLWTKGLTARFLSAIPSGFFLSVSYELVKKLSMKPE 1141
            + NI+ I W+ LDK+K+Y  G  + + +R+ VYP  LI+TRLQVQK KS Y+GT DAF KI + +GI G Y+GF  +T ++ SGQ Y+TT+E+ R+  A  SQ++  KSL+AG  ASL  Q++TVPID++SQ  MM  +     R Q  G P+     +  Q      +I + +GLRGFY+GYVAS+LTY PNS +WW  Y+ + +    + P   P +V Q +SGP AA  AS LTNP D+IRTR+QVE GK++I  T  +L+ EEG   L  KGL+AR +SA PS   + V YE +KKLS++PE
Sbjct:    4 KRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGKSLYHGTFDAFIKILRADGITGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQGVVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSYLCPKECPHIVFQAVSGPLAAATASILTNPMDVIRTRVQVE-GKNSIILTFRQLMAEEGPWGL-MKGLSARIISATPSTIVIVVGYESLKKLSLRPE 307
The following BLAST results are available for this feature:
BLAST of TCONS_00028590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S25441.422e-8447.39Solute carrier family 25 member 44 OS=Homo sapiens... [more]
back to top