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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028598 ID=TCONS_00028598|Name=TCONS_00028598|organism=Clytia hemisphaerica|type=transcript|length=3430bpRun BLAST on NCBI protein sequence of TCONS_00028598-protein >TCONS_00028598-protein ID=TCONS_00028598-protein|Name=TCONS_00028598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=918bp EKTENCILIYFYITRVKCKKGISRVMSSETVKQDETSRKESNVRVVVRVRRun BLAST on NCBI transcript from alignment at sc0000693:35102..61274+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028598 ID=TCONS_00028598|Name=TCONS_00028598|organism=Clytia hemisphaerica|type=transcript|length=26173bp|location=Sequence derived from alignment at sc0000693:35102..61274+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000693:35102..61274+ >TCONS_00028598 ID=TCONS_00028598|Name=TCONS_00028598|organism=Clytia hemisphaerica|type=CDS|length=30327bp|location=Sequence derived from alignment at sc0000693:35102..61274+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028598 vs. Swiss-Prot (Human)
Match: KI18B (Kinesin-like protein KIF18B OS=Homo sapiens GN=KIF18B PE=1 SV=3) HSP 1 Score: 460.685 bits (1184), Expect = 1.325e-144 Identity = 221/363 (60.88%), Postives = 282/363 (77.69%), Query Frame = 1
Query: 190 VVKVVDNFMLTFDPKEND------QFGGTQKRCSILDKKMRDLNFMFDRVFDDQATNEDVFQHTTKPVIESVLQGFNCSVFAYGATSAGKTHTMLGSPNQPGVIFLTMMELYKSLMAIDEQFETDISVSYLEIYNETCKDLLLPTGPLAVREDPEKGVCVAGLSLHKPRSAEELLEMLHFGNQNRTQHPTDANKQSSRSHAVFQVFVKQLPKASGITASVKIAKISLIDLAGSERATVTTNHGERLREGANINKSLLALGNCINALAENKNN-LHVPYRNSKLTRLLKDSLGGNCKTIMIAAVSPSTLSYEDTYNTLKYANRAKNIKSNLTSNTINVDFHVTQYAKIVEDLKNQIALLQKKLE 1257
VV+VVD +L F+P+E D ++GGT KK +DL F+FDRVF + AT +DVFQHTT V++S LQG+NCSVFAYGAT AGKTHTMLG PG+++LT +ELY+ L A ++ ++ +SY E+YNE DLL P GPLA+REDP+KGV V GLS H+P SAE+LLE+L GN+NRTQHPTDAN SSRSHA+FQ+FVKQ + G+T +V++AK+SLIDLAGSERA+ T GERLREGANIN+SLLAL N +NALA+ K HVPYR+SKLTRLLKDSLGGNC+T+MIAA+SPS+L+YEDTYNTLKYA+RAK I+ +L SN ++D H++QYA I + L+ ++A L+KKL+
Sbjct: 38 VVQVVDERVLVFNPEEPDGGFPGLKWGGTHDGPK---KKGKDLTFVFDRVFGEAATQQDVFQHTTHSVLDSFLQGYNCSVFAYGATGAGKTHTMLGREGDPGIMYLTTVELYRRLEARQQEKHFEVLISYQEVYNEQIHDLLEPKGPLAIREDPDKGVVVQGLSFHQPASAEQLLEILTRGNRNRTQHPTDANATSSRSHAIFQIFVKQQDRVPGLTQAVQVAKMSLIDLAGSERASSTHAKGERLREGANINRSLLALINVLNALADAKGRKTHVPYRDSKLTRLLKDSLGGNCRTVMIAAISPSSLTYEDTYNTLKYADRAKEIRLSLKSNVTSLDCHISQYATICQQLQAEVAALRKKLQ 397 The following BLAST results are available for this feature:
BLAST of TCONS_00028598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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