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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028694 ID=TCONS_00028694|Name=TCONS_00028694|organism=Clytia hemisphaerica|type=transcript|length=1899bp
GTTTTCCCATCTCATGGTAGTTTATAGAAAAGTAGTAGTTCTTTGATATT
CGCTCTGTGGATATTCTTGGAACCAGATTGGAACAGTTCTCTTTCAAAAA
CTCTTAAAGTCCAAACATTTTCGAACCAGACTACAAATTAATCCATTTAG
CATGCAAGCAATATTATTTTCTGAAACTTCTTAAAAATTCTTTTATACTA
TATTTACAAAATAAGACTGAATAAGACTCGATTTACAtcacggaaaaaaa
attcaaaagtataaacaaaaataaacctcaaaaatattttgacagaACAA
TAACATTTAACCGTTGTTCCTATGGTGTGTTTGTGACAACTGGAATTCAA
GTTCTTGAAAGAAACTCCAATTGAAATACTACTACTTTTAATTATCAACT
CTTAAAACTTATCAAATTAACCATTCCTTCGAATTTTATCTTAAAGTTGA
GTGGTAGCTCTTCTCTGTTGGTTTTTGGATATCATGTCCTCATACATTAT
ATTCCGGATTGCGGCATTCTGATTCAGCGGAACTCTACATTGCGGACAGT
GCGTCATATTTGGTTTTTCTTTGCACTCACTACAATACACATGTCCATTA
GCGCACTGGTAAACTTTCTTCGGAGCAAACGGAAGCTCAAAACATATAGG
ACATTCAAACTCGCAACGATCTTTCAAACTATGACTTCTAGTTATGGAGG
ATGTTTCACCTTGGTTGTTATTGTTATCTTTACGTTTTTGTAGTTCCTCC
ATGTCTTccaaaatattgtttttcattCTTTCCCTGGTCACACGTTCTTG
GTTCACATCACGTAGTTTGGCTTCTAGTTGCGTGATTTGTTGTGTGAGCT
TGGTCGCCGATTCATCTAAATCTTTTAATTCGTCTGTAACGTCTCTTAGT
TCGctctctttttcatttaaagcgTTTTCGACCTCTTGTGTTTTCATTTC
AGCCATTCGGCGATGTAAGCTCTCACGTTTTGTTATCTCTGACATAACTC
GTTTAGCCTGGACTCGTTTCTCATCTTTATTATACGCTTTTTCCCGTTCG
CTTCGTTTCTTATCTTCAATAAGATTAACGTAATGTTCATATTGAAGCGC
GCGTGCAATATCCAACGCCGTTTCGCCTTTATTGTTACGTATATCGACGT
CAATGTTGTTATCAACGTATAACGTAGCTGCTTCATAGTTATTCTTCACA
ACAGCCAAGTGTAAAGCTGTGTTCCCCTGCTGGTCGCTATTGTTGAGATT
GACTCTGCGTTCTATCAAGCATCTTATTATCTCCATATGACCATGAAATG
TCGCCATGTGTAAAGGTGTAGACCAGTCTATGTTACAAGCGTGAATGTTC
GCGCCATAGCTTAGTAACAGCTCAACGATTTCCCGTAACCCATGCGTGGC
GGCCAGACATATGGGGATTGTAGAGACTTGCTTCTTTCCTTGAACAGTGT
GACTCGTTTCGTTGACTGCCTTGTTCACGTCATAACCTTTCTGCAGCTTC
TTACTGACCTTTCGGACGTCGTTTGAACGGATGGCTTTTAGCATCTCTGT
CATAGTGTCAGTGGTGTTATCGAAGTGAAAATATGTCTTTAGGGTTCAAA
AGCGTCCAACCGAACTATATCTATGAGCCAAATGTTGATACCAAACCTTA
TCCAGATTTGAagcaaattttgagttatgaaaacaaatttattctgtttt
tgttccaagcAGGTTCACAAGCGGacaataaagtttacaaaattcTCTGT
GCTGTCTTTTGAAATGTGTTCAGccgtttatttttcttctcctcTCCTTT
GCTTTCCTCCTTTCTATATCAAATTATTCTGCGAAGACAAGAAGAGAGAT
ATAATAAAAGATATGACATAAATCACTTTCTTAATTTCTTGACTATTCA Run BLAST on NCBI protein sequence of TCONS_00028694-protein >TCONS_00028694-protein ID=TCONS_00028694-protein|Name=TCONS_00028694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MTEMLKAIRSNDVRKVSKKLQKGYDVNKAVNETSHTVQGKKQVSTIPICL
AATHGLREIVELLLSYGANIHACNIDWSTPLHMATFHGHMEIIRCLIERR
VNLNNSDQQGNTALHLAVVKNNYEAATLYVDNNIDVDIRNNKGETALDIA
RALQYEHYVNLIEDKKRSEREKAYNKDEKRVQAKRVMSEITKRESLHRRM
AEMKTQEVENALNEKESELRDVTDELKDLDESATKLTQQITQLEAKLRDV
NQERVTRERMKNNILEDMEELQKRKDNNNNQGETSSITRSHSLKDRCEFE
CPICFELPFAPKKVYQCANGHVYCSECKEKPNMTHCPQCRVPLNQNAAIR
NIMYEDMISKNQQRRATTQL Run BLAST on NCBI transcript from alignment at sc0000697:154397..156295 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028694 ID=TCONS_00028694|Name=TCONS_00028694|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at sc0000697:154397..156295 (Clytia hemisphaerica)
TGAATAGTCAAGAAATTAAGAAAGTGATTTATGTCATATCTTTTATTATA
TCTCTCTTCTTGTCTTCGCAGAATAATTTGATATAGAAAGGAGGAAAGCA
AAGGAgaggagaagaaaaataaacggCTGAACACATTTCAAAAGACAGCA
CAGAgaattttgtaaactttattgtCCGCTTGTGAACCTgcttggaacaa
aaacagaataaatttgttttcataactcaaaatttgctTCAAATCTGGAT
AAGGTTTGGTATCAACATTTGGCTCATAGATATAGTTCGGTTGGACGCTT
TTGAACCCTAAAGACATATTTTCACTTCGATAACACCACTGACACTATGA
CAGAGATGCTAAAAGCCATCCGTTCAAACGACGTCCGAAAGGTCAGTAAG
AAGCTGCAGAAAGGTTATGACGTGAACAAGGCAGTCAACGAAACGAGTCA
CACTGTTCAAGGAAAGAAGCAAGTCTCTACAATCCCCATATGTCTGGCCG
CCACGCATGGGTTACGGGAAATCGTTGAGCTGTTACTAAGCTATGGCGCG
AACATTCACGCTTGTAACATAGACTGGTCTACACCTTTACACATGGCGAC
ATTTCATGGTCATATGGAGATAATAAGATGCTTGATAGAACGCAGAGTCA
ATCTCAACAATAGCGACCAGCAGGGGAACACAGCTTTACACTTGGCTGTT
GTGAAGAATAACTATGAAGCAGCTACGTTATACGTTGATAACAACATTGA
CGTCGATATACGTAACAATAAAGGCGAAACGGCGTTGGATATTGCACGCG
CGCTTCAATATGAACATTACGTTAATCTTATTGAAGATAAGAAACGAAGC
GAACGGGAAAAAGCGTATAATAAAGATGAGAAACGAGTCCAGGCTAAACG
AGTTATGTCAGAGATAACAAAACGTGAGAGCTTACATCGCCGAATGGCTG
AAATGAAAACACAAGAGGTCGAAAAcgctttaaatgaaaaagagagCGAA
CTAAGAGACGTTACAGACGAATTAAAAGATTTAGATGAATCGGCGACCAA
GCTCACACAACAAATCACGCAACTAGAAGCCAAACTACGTGATGTGAACC
AAGAACGTGTGACCAGGGAAAGaatgaaaaacaatattttggAAGACATG
GAGGAACTACAAAAACGTAAAGATAACAATAACAACCAAGGTGAAACATC
CTCCATAACTAGAAGTCATAGTTTGAAAGATCGTTGCGAGTTTGAATGTC
CTATATGTTTTGAGCTTCCGTTTGCTCCGAAGAAAGTTTACCAGTGCGCT
AATGGACATGTGTATTGTAGTGAGTGCAAAGAAAAACCAAATATGACGCA
CTGTCCGCAATGTAGAGTTCCGCTGAATCAGAATGCCGCAATCCGGAATA
TAATGTATGAGGACATGATATCCAAAAACCAACAGAGAAGAGCTACCACT
CAACTTTAAGATAAAATTCGAAGGAATGGTTAATTTGATAAGTTTTAAGA
GTTGATAATTAAAAGTAGTAGTATTTCAATTGGAGTTTCTTTCAAGAACT
TGAATTCCAGTTGTCACAAACACACCATAGGAACAACGGTTAAATGTTAT
TGTtctgtcaaaatatttttgaggtttatttttgtttatacttttgaatt
ttttttccgtgaTGTAAATCGAGTCTTATTCAGTCTTATTTTGTAAATAT
AGTATAAAAGAATTTTTAAGAAGTTTCAGAAAATAATATTGCTTGCATGC
TAAATGGATTAATTTGTAGTCTGGTTCGAAAATGTTTGGACTTTAAGAGT
TTTTGAAAGAGAACTGTTCCAATCTGGTTCCAAGAATATCCACAGAGCGA
ATATCAAAGAACTACTACTTTTCTATAAACTACCATGAGATGGGAAAAC Coding sequence (CDS) from alignment at sc0000697:154397..156295 >TCONS_00028694 ID=TCONS_00028694|Name=TCONS_00028694|organism=Clytia hemisphaerica|type=CDS|length=1113bp|location=Sequence derived from alignment at sc0000697:154397..156295 (Clytia hemisphaerica)
ATGACAGAGATGCTAAAAGCCATCCGTTCAAACGACGTCCGAAAGGTCAG
TAAGAAGCTGCAGAAAGGTTATGACGTGAACAAGGCAGTCAACGAAACGA
GTCACACTGTTCAAGGAAAGAAGCAAGTCTCTACAATCCCCATATGTCTG
GCCGCCACGCATGGGTTACGGGAAATCGTTGAGCTGTTACTAAGCTATGG
CGCGAACATTCACGCTTGTAACATAGACTGGTCTACACCTTTACACATGG
CGACATTTCATGGTCATATGGAGATAATAAGATGCTTGATAGAACGCAGA
GTCAATCTCAACAATAGCGACCAGCAGGGGAACACAGCTTTACACTTGGC
TGTTGTGAAGAATAACTATGAAGCAGCTACGTTATACGTTGATAACAACA
TTGACGTCGATATACGTAACAATAAAGGCGAAACGGCGTTGGATATTGCA
CGCGCGCTTCAATATGAACATTACGTTAATCTTATTGAAGATAAGAAACG
AAGCGAACGGGAAAAAGCGTATAATAAAGATGAGAAACGAGTCCAGGCTA
AACGAGTTATGTCAGAGATAACAAAACGTGAGAGCTTACATCGCCGAATG
GCTGAAATGAAAACACAAGAGGTCGAAAAcgctttaaatgaaaaagagag
CGAACTAAGAGACGTTACAGACGAATTAAAAGATTTAGATGAATCGGCGA
CCAAGCTCACACAACAAATCACGCAACTAGAAGCCAAACTACGTGATGTG
AACCAAGAACGTGTGACCAGGGAAAGaatgaaaaacaatattttggAAGA
CATGGAGGAACTACAAAAACGTAAAGATAACAATAACAACCAAGGTGAAA
CATCCTCCATAACTAGAAGTCATAGTTTGAAAGATCGTTGCGAGTTTGAA
TGTCCTATATGTTTTGAGCTTCCGTTTGCTCCGAAGAAAGTTTACCAGTG
CGCTAATGGACATGTGTATTGTAGTGAGTGCAAAGAAAAACCAAATATGA
CGCACTGTCCGCAATGTAGAGTTCCGCTGAATCAGAATGCCGCAATCCGG
AATATAATGTATGAGGACATGATATCCAAAAACCAACAGAGAAGAGCTAC
CACTCAACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028694-exon-sc0000697-1491911889:154397..156295 | TCONS_00028694-exon-sc0000697-1491911889:154397..156295 | Clytia hemisphaerica | exon |
| TCONS_00028694-exon-sc0000697-1510915933:154397..156295 | TCONS_00028694-exon-sc0000697-1510915933:154397..156295 | Clytia hemisphaerica | exon |
| TCONS_00028694-exon-sc0000697-1575043694:154397..156295 | TCONS_00028694-exon-sc0000697-1575043694:154397..156295 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000697 | supercontig | sc0000697:154397..156295 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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